Polar solvation dynamics in Zn(II)-substituted cytochrome c: Diffusive sampling of the energy landscape in the hydrophobic core and solvent-contact layer

Journal of Physical Chemistry B

Volumn 108, Issue 41, 2004, Pages 16288-16294

  Lampa Pastirk, Sanela ^a   Beck, Warren F ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIPOLE MOMENTS; POLAR SOLVATION DYNAMICS; REORGANIZATION ENERGY; TIME-RESOLVED FLUORESCENCE SPECTROSCOPY;

ABSORPTION; EXTRAPOLATION; FLUORESCENCE; HYDROPHOBICITY; PHOTODISSOCIATION; POLYPEPTIDES; PORPHYRINS; POTENTIAL ENERGY; PROTEINS; SOLVENTS;

PIGMENTS;

EID: 7044226398     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp0488113     Document Type: Article

References (52)

1. Frauenfelder, H.; Sligar, S. G.; Wolynes, P. G. Science 1991, 254, 1598-1603.
2. Vanderkooi, J. M. Biochim. Biophys. Acta 1998, 1386, 241-253.
3. Leeson, D. T.; Berg, O.; Wiersma, D. A. J. Phys. Chem. 1994, 98, 3913-3916.
4. Vanderkooi, J. M.; Adar, F.; Erecínska, M. Eur. J. Biochem. 1976, 64, 381-387.
5. Anni, H.; Vanderkooi, J. M.; Mayne, L. Biochemistry 1995, 34, 5744-5753.
6. Quian, C.; Yao, Y.; Tong, Y.; Wang, J.; Tang, W. J. Biol. Inorg. Chem. 2003, 8, 394-400.
7. Vanderkooi, J. M.; Landesberg, R.; Hayden, G. W.; Owen, C. S. Eur. J. Biochem. 1977, 81, 339-347.
8. Ye, S.; Shen, C.; Cotton, T. M.; Kostíc, N. M. J. Inorg. Biochem. 1997.
9. Lampa-Pastirk, S.; Lafuente, R. C.; Beck, W. F. J. Phys. Chem. B 2004, 108, 12602-12607.
10. Delano, W. L. The PyMOL Molecular Graphics system; DeLano Scientific: San Carlos, California, 2002.
11. Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. Nucl. Acids Res. 2000, 28, 235-242.
12. Bushnell, G. W.; Louie, G. V.; Brayer, G. D. J. Mol. Biol. 1990, 214, 585-595.
13. Kang, T. J.; Yu, J.; Berg, M. Chem. Phys. Lett. 1990, 174, 476-480.
14. Saven, J. G.; Skinner, J. L. J. Chem. Phys. 1993, 99, 4391-4402.
15. Fourkas, J. T.; Benigno, A.; Berg, M. J. Chem. Phys. 1993, 99, 8552-8558.
16. Fourkas, J. T.; Berg, M. J. Chem. Phys. 1993, 98, 7773-7785.
17. Bagchi, B. J. Chem. Phys. 1994, 100, 6658-6664.
18. Ladanyi, B. M.; Stratt, R. M. J. Phys. Chem. 1996, 200, 1266-1282.
19. Berg, M. J. Phys. Chem. A 1998, 102, 17-30.
20. Berg, M. J. Chem. Phys. 1999, 110, 8577-8588.
21. Lakowicz, J. R. Principles of Fluorescence Spectroscopy, 2nd ed.; Kluwer Academic/Plenum Publishers: New York, 1999.
22. Melhuish, W. J. Res. Natl. Bur. Stand. 1972, 76A, 547-560.
23. Velapoldi, R. A.; Mielenz, K. D. A Fluorescence Standard Reference Material: Quinine Sulfate Dihydrate; National Bureau of Standards (U. S.), 1980; Sec. Publ. 260-64.
24. Cantor, C. R.; Schimmel, P. R. Biophysical Chemistry: Techniques for the Study of Biological Structure and Function; W. H. Freeman: San Francisco, 1980.
25. McHale, J. L. Molecular Spectroscopy; Prentice Hall: Upper Saddle River, New Jersey, 1999.
26. Gouterman, M. In The Porphyrins; Dolphin, D., Ed.; Academic Press: New York, 1978; Vol. 3, pp 1-159.
27. Kennis, J. T. M.; Larsen, D. S.; Ohta, K.; Facciotti, M. T.; Glaeser, R. M.; Fleming, G. R. J. Phys. Chem. B 2002, 106, 6067-6080.
28. Jordanides, X. J.; Lang, M. J.; Song, X.; Fleming, G. R. J. Phys. Chem. B 1999, 103, 7995-8005.
29. Siano, D. B.; Metzler, D. E. J. Chem. Phys. 1969, 51, 1856-1861.
30. Cho, M.; Yu, J.-Y.; Joo, T.; Nagasawa, Y.; Passino, S. A.; Fleming, G. R. J. Phys. Chem. 1996, 100, 11944-11953.
31. Fleming, G. R.; Cho, M. Annu. Rev. Phys. Chem. 1996, 47, 109-134.
32. Joo, T.; Jia, Y.; Yu, J.; Lang, M. J.; Fleming, G. R. J. Chem. Phys. 1996, 104, 6089-6108.
33. Stratt, R. M.; Maroncelli, M. J. Phys. Chem. 1996, 100, 12981-12996.
34. Changenet-Barret, P.; Choma, C. T.; Gooding, E. F.; DeGrado, W.; Hochstrasser, R. M. J. Phys. Chem. B 2000, 104, 9322-9329.
35. Cohen, B. E.; McAnaney, T. B.; Park, E. S.; Jan, Y. N.; Boxer, S. G.; Jan, L. Y. Science 2002, 296, 1700-1703.
36. Riter, R. E.; Edington, M. D.; Beck, W. F. J. Phys. Chem. 1996, 100, 14198-14205.
37. Homoelle, B. J.; Edington, M. D.; Diffey, W. M.; Beck, W. F. J. Phys. Chem. B 1998, 102, 3044-3052.
38. Rosenthal, S. J.; Xie, X.; Du, M.; Fleming, G. R. J. Chem. Phys. 1991, 95, 4715-4718.
39. Maroncelli, M.; Kumar, P. V.; Papazyan, A.; Horng, M. L.; Rosenthal, S. J.; Fleming, G. R. In Ultrafast Reaction Dynamics and Solvent Effects; Guaduel, Y., Rossky, P. I., Eds.; AIP Press: Woodbury, NY, 1994; pp 310-333.
40. Joo, T.; Jia, Y.; Yu, J.-Y.; Lang, M. J.; Fleming, G. R. J. Chem. Phys. 1996, 104, 6089-6108.
41. McHale, J. L. Acc. Chem. Res. 2001, 34, 265-272.
42. Homoelle, B. J.; Beck, W. F. Biochemistry 1997, 36, 12970-12975.
43. Bashkin, J. S.; McLendon, G.; Mukamel, S.; Marohn, J. J. Phys. Chem. 1990, 94, 4757-4761.
44. Pierce, D. W.; Boxer, S. G. J. Phys. Chem. 1992, 96, 5560-5566.
45. Pethig, R. Annu. Rev. Phys. Chem. 1992, 43, 177-205.
46. Nandi, N.; Bagchi, B. J. Phys. Chem. B 1997, 101, 10954-10961.
47. Nandi, N.; Bhattacharyya, K.; Bagchi, B. Chem. Rev. 2000, 100, 2013-2045.
48. Bizzari, A. R.; Cannistraro, S. J. Phys. Chem. B 2002, 106, 6617-6633.
49. Pal, S. K.; Peon, J.; Bagchi, B.; Zewail, A. H. J. Phys. Chem. B 2002, 106, 12376-12395.
50. Brayer, G. D.; Murphy, M. E. In Cytochrome c: A Multidisciplinary Approach; Scott, R. A., Mauk, A. G., Eds.; University Science Books: Sausalito, California, 1996; pp 103-166.
51. Fee, R. S.; Maroncelli, M. Chem. Phys. 1994, 183, 235-247.
52. Mukamel, S. Principles of Nonlinear Optical Spectroscopy; Oxford University Press: New York, 1995.