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Volumn 37, Issue 18, 2009, Pages

An efficient method to assemble linear DNA templates for in vitro screening and selection systems

Author keywords

[No Author keywords available]

Indexed keywords

POLYDEOXYRIBONUCLEOTIDE SYNTHASE; URACIL; DNA; METHYLATED DNA PROTEIN CYSTEINE METHYLTRANSFERASE;

EID: 70350669712     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp589     Document Type: Article
Times cited : (22)

References (39)
  • 1
    • 48249098990 scopus 로고    scopus 로고
    • Protein design by directed evolution
    • Jackel,C., Kast,P. and Hilvert,D. (2008) Protein design by directed evolution. Annu. Rev. Biophys., 37, 153-173.
    • (2008) Annu. Rev. Biophys , vol.37 , pp. 153-173
    • Jackel, C.1    Kast, P.2    Hilvert, D.3
  • 2
    • 23044447796 scopus 로고    scopus 로고
    • New genotype-phenotype linkages for directed evolution of functional proteins
    • Leemhuis,H., Stein,V., Griffiths,A.D. and Hollfelder,F. (2005) New genotype-phenotype linkages for directed evolution of functional proteins. Curr. Opin. Struct. Biol., 15, 472-478.
    • (2005) Curr. Opin. Struct. Biol , vol.15 , pp. 472-478
    • Leemhuis, H.1    Stein, V.2    Griffiths, A.D.3    Hollfelder, F.4
  • 3
    • 13844250741 scopus 로고    scopus 로고
    • High-throughput screens and selections of enzyme-encoding genes
    • Aharoni,A., Griffiths,A.D. and Tawfik,D.S. (2005) High-throughput screens and selections of enzyme-encoding genes. Curr. Opin. Chem. Biol., 9, 210-216.
    • (2005) Curr. Opin. Chem. Biol , vol.9 , pp. 210-216
    • Aharoni, A.1    Griffiths, A.D.2    Tawfik, D.S.3
  • 4
    • 3142685154 scopus 로고    scopus 로고
    • In-vitro protein evolution by ribosome display and mRNA display
    • Lipovsek,D. and Pluckthun,A. (2004) In-vitro protein evolution by ribosome display and mRNA display. J. Immunol. Method, 290, 51-67.
    • (2004) J. Immunol. Method , vol.290 , pp. 51-67
    • Lipovsek, D.1    Pluckthun, A.2
  • 8
    • 33847634290 scopus 로고    scopus 로고
    • Ribosome display: Selecting and evolving proteins in vitro that specifically bind to a target
    • Zahnd,C., Amstutz,P. and Pluckthun,A. (2007) Ribosome display: Selecting and evolving proteins in vitro that specifically bind to a target. Nat. Method, 4, 269-279.
    • (2007) Nat. Method , vol.4 , pp. 269-279
    • Zahnd, C.1    Amstutz, P.2    Pluckthun, A.3
  • 9
    • 33947167309 scopus 로고    scopus 로고
    • Selection of single domain binding proteins by covalent DNA display
    • Bertschinger,J., Grabulovski,D. and Neri,D. (2007) Selection of single domain binding proteins by covalent DNA display. Protein Eng. Des. Sel., 20, 57-68.
    • (2007) Protein Eng. Des. Sel , vol.20 , pp. 57-68
    • Bertschinger, J.1    Grabulovski, D.2    Neri, D.3
  • 10
    • 3042855579 scopus 로고    scopus 로고
    • In vitro selection of restriction endonucleases by in vitro compartmentalization
    • Doi,N., Kumadaki,S., Oishi,Y., Matsumura,N. and Yanagawa,H. (2004) In vitro selection of restriction endonucleases by in vitro compartmentalization. Nucleic Acids Res., 32, e95.
    • (2004) Nucleic Acids Res , vol.32
    • Doi, N.1    Kumadaki, S.2    Oishi, Y.3    Matsumura, N.4    Yanagawa, H.5
  • 11
    • 0842313326 scopus 로고    scopus 로고
    • Altering the sequence specificity of HaeIII methyltransferase by directed evolution using in vitro compartmentalization
    • Cohen,H.M., Tawfik,D.S. and Griffiths,A.D. (2004) Altering the sequence specificity of HaeIII methyltransferase by directed evolution using in vitro compartmentalization. Protein Eng. Des. Sel., 17, 3-11.
    • (2004) Protein Eng. Des. Sel , vol.17 , pp. 3-11
    • Cohen, H.M.1    Tawfik, D.S.2    Griffiths, A.D.3
  • 12
    • 0037413687 scopus 로고    scopus 로고
    • Directed evolution of an extremely fast phosphotriesterase by in vitro compartmentalization
    • Griffiths,A.D. and Tawfik,D.S. (2003) Directed evolution of an extremely fast phosphotriesterase by in vitro compartmentalization. EMBO J., 22, 24-35.
    • (2003) EMBO J , vol.22 , pp. 24-35
    • Griffiths, A.D.1    Tawfik, D.S.2
  • 14
    • 34547661589 scopus 로고    scopus 로고
    • Directed evolution of p53 variants with altered DNA-binding specificities by in vitro compartmentalization
    • Fen,C.X., Coomber,D.W., Lane,D.P. and Ghadessy,F.J. (2007) Directed evolution of p53 variants with altered DNA-binding specificities by in vitro compartmentalization. J. Mol. Biol., 371, 1238-1248.
    • (2007) J. Mol. Biol , vol.371 , pp. 1238-1248
    • Fen, C.X.1    Coomber, D.W.2    Lane, D.P.3    Ghadessy, F.J.4
  • 15
    • 11844273937 scopus 로고    scopus 로고
    • Directed evolution of protein inhibitors of DNA-nucleases by in vitro compartmentalization (IVC) and nano-droplet delivery
    • Bernath,K., Magdassi,S. and Tawfik,D.S. (2005) Directed evolution of protein inhibitors of DNA-nucleases by in vitro compartmentalization (IVC) and nano-droplet delivery. J. Mol. Biol., 345, 1015-1026.
    • (2005) J. Mol. Biol , vol.345 , pp. 1015-1026
    • Bernath, K.1    Magdassi, S.2    Tawfik, D.S.3
  • 16
    • 51649085576 scopus 로고    scopus 로고
    • Directed evolution of streptavidin variants using in vitro compartmentalization
    • Levy,M. and Ellington,A.D. (2008) Directed evolution of streptavidin variants using in vitro compartmentalization. Chem. Biol., 15 979-989.
    • (2008) Chem. Biol , vol.15 , pp. 979-989
    • Levy, M.1    Ellington, A.D.2
  • 17
    • 70350649409 scopus 로고    scopus 로고
    • Roche-Applied-Science. (2007) Manual for RTS 100 E. coli, HY Kit, Mannheim.
    • Roche-Applied-Science. (2007) Manual for RTS 100 E. coli, HY Kit, Mannheim.
  • 18
    • 70350638070 scopus 로고    scopus 로고
    • Invitrogen. (2006) Manual for Expressway Cell-Free E. coli, Expression System, Carlsbad, CA.
    • Invitrogen. (2006) Manual for Expressway Cell-Free E. coli, Expression System, Carlsbad, CA.
  • 19
    • 0026254543 scopus 로고
    • Rapid and efficient cloning of Alu-PCR products using uracil DNA glycosylase
    • Nisson,P.E., Rashtchian,A. and Watkins,P.C. (1991) Rapid and efficient cloning of Alu-PCR products using uracil DNA glycosylase. PCR Methods Appl., 1, 120-123.
    • (1991) PCR Methods Appl , vol.1 , pp. 120-123
    • Nisson, P.E.1    Rashtchian, A.2    Watkins, P.C.3
  • 20
    • 0027440499 scopus 로고
    • Generation of cohesive ends on PCR products by UDG-mediated excision of dU, and application for cloning into restriction digest-linearized vectors
    • Smith,C., Day,P.J. and Walker,M.R. (1993) Generation of cohesive ends on PCR products by UDG-mediated excision of dU, and application for cloning into restriction digest-linearized vectors. PCR Methods Appl., 2, 328-332.
    • (1993) PCR Methods Appl , vol.2 , pp. 328-332
    • Smith, C.1    Day, P.J.2    Walker, M.R.3
  • 21
    • 0028945025 scopus 로고
    • Novel methods for cloning and engineering genes using the polymerase chain reaction
    • Rashtchian,A. (1995) Novel methods for cloning and engineering genes using the polymerase chain reaction. Curr. Opin. Biotechnol., 6 30-36.
    • (1995) Curr. Opin. Biotechnol , vol.6 , pp. 30-36
    • Rashtchian, A.1
  • 23
    • 34249854159 scopus 로고    scopus 로고
    • USER fusion: A rapid and efficient method for simultaneous fusion and cloning of multiple PCR products
    • Geu-Flores,F., Nour-Eldin,H.H., Nielsen,M.T. and Halkier,B.A. (2007) USER fusion: A rapid and efficient method for simultaneous fusion and cloning of multiple PCR products. Nucleic Acids Res., 35, e55.
    • (2007) Nucleic Acids Res , vol.35
    • Geu-Flores, F.1    Nour-Eldin, H.H.2    Nielsen, M.T.3    Halkier, B.A.4
  • 25
    • 33745712857 scopus 로고    scopus 로고
    • Directed evolution of O6-alkylguanine-DNA alkyltransferase for applications in protein labeling
    • Gronemeyer,T., Chidley,C., Juillerat,A., Heinis,C. and Johnsson,K. (2006) Directed evolution of O6-alkylguanine-DNA alkyltransferase for applications in protein labeling. Protein Eng. Des. Sel., 19 309-316.
    • (2006) Protein Eng. Des. Sel , vol.19 , pp. 309-316
    • Gronemeyer, T.1    Chidley, C.2    Juillerat, A.3    Heinis, C.4    Johnsson, K.5
  • 26
    • 0026101630 scopus 로고
    • Precipitation of DNA by polyethylene glycol and ethanol
    • Paithankar,K.R. and Prasad,K.S. (1991) Precipitation of DNA by polyethylene glycol and ethanol. Nucleic Acids Res., 19, 1346.
    • (1991) Nucleic Acids Res , vol.19 , pp. 1346
    • Paithankar, K.R.1    Prasad, K.S.2
  • 27
    • 38849128296 scopus 로고    scopus 로고
    • A covalent chemical genotype-phenotype linkage for in vitro protein evolution
    • Stein,V., Sielaff,I., Johnsson,K. and Hollfelder,F. (2007) A covalent chemical genotype-phenotype linkage for in vitro protein evolution. Chembiochem., 8, 2191-2194.
    • (2007) Chembiochem , vol.8 , pp. 2191-2194
    • Stein, V.1    Sielaff, I.2    Johnsson, K.3    Hollfelder, F.4
  • 28
    • 0036894880 scopus 로고    scopus 로고
    • Structural basis for uracil recognition by archaeal family B DNA polymerases
    • Fogg,M.J., Pearl,L.H. and Connolly,B.A. (2002) Structural basis for uracil recognition by archaeal family B DNA polymerases. Nat. Struct. Biol., 9, 922-927.
    • (2002) Nat. Struct. Biol , vol.9 , pp. 922-927
    • Fogg, M.J.1    Pearl, L.H.2    Connolly, B.A.3
  • 29
    • 0037154224 scopus 로고    scopus 로고
    • Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation
    • Hogrefe,H.H., Hansen,C.J., Scott,B.R. and Nielson,K.B. (2002) Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation. Proc. Natl Acad. Sci. USA, 99 596-601.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 596-601
    • Hogrefe, H.H.1    Hansen, C.J.2    Scott, B.R.3    Nielson, K.B.4
  • 30
    • 0037225952 scopus 로고    scopus 로고
    • A general method for the covalent labeling of fusion proteins with small molecules in vivo
    • Keppler,A., Gendreizig,S., Gronemeyer,T., Pick,H., Vogel,H. and Johnsson,K. (2003) A general method for the covalent labeling of fusion proteins with small molecules in vivo. Nat. Biotechnol., 21, 86-89.
    • (2003) Nat. Biotechnol , vol.21 , pp. 86-89
    • Keppler, A.1    Gendreizig, S.2    Gronemeyer, T.3    Pick, H.4    Vogel, H.5    Johnsson, K.6
  • 31
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker,I.L. (2003) Vienna RNA secondary structure server. Nucleic Acids Res., 31, 3429-3431.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 32
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia,J. Jr. (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 1460-1465
    • SantaLucia Jr., J.1
  • 34
    • 0025944267 scopus 로고
    • DNA probes: Applications of the principles of nucleic acid hybridization
    • Wetmur,J.G. (1991) DNA probes: Applications of the principles of nucleic acid hybridization. Crit. Rev. Biochem. Mol. Biol., 26, 227-259.
    • (1991) Crit. Rev. Biochem. Mol. Biol , vol.26 , pp. 227-259
    • Wetmur, J.G.1
  • 37
  • 38
    • 70350687174 scopus 로고    scopus 로고
    • Roche-Applied-Science. (2001) Manual for RTS E. coli, Linear Template Generation Set, Mannheim.
    • Roche-Applied-Science. (2001) Manual for RTS E. coli, Linear Template Generation Set, Mannheim.


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