-
1
-
-
0031458333
-
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
-
DOI 10.1038/37052
-
Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, Richardson DL, Kerlavage AR, Graham DE, Kyrpides NC, Fleischmann RD, Quackenbush J, Lee NH, Sutton GG, Gill S, Kirkness EF, Dougherty BA, McKenney K, Adams MD, Loftus B, Peterson S, Reich CI, McNeil LK, Badger JH, Glodek A, Zhou L, Overbeek R, Gocayne JD, Weidman JF, McDonald L, Utterback T, Cotton MD, Spriggs T, Artiach P, Kaine BP, Sykes SM, Sadow PW, D'Andrea KP, Bowman C, Fujii C, Garland SA, Mason TM, Olsen GJ, Fraser CM, Smith HO, Woese CR, Venter JC (1997) The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390:364-370. (Pubitemid 28027309)
-
(1997)
Nature
, vol.390
, Issue.6658
, pp. 364-370
-
-
Klenk, H.-P.1
Clayton, R.A.2
Tomb, J.-F.3
White, O.4
Nelson, K.E.5
Ketchum, K.A.6
Dodson, R.J.7
Gwinn, M.8
Hickey, E.K.9
Peterson, J.D.10
Richardson, D.L.11
Kerlavage, A.R.12
Graham, D.E.13
Krypides, N.C.14
Fleischmann, R.D.15
Quackenbush, J.16
Lee, N.H.17
Sutton, G.G.18
Gill, S.19
Kirkness, E.F.20
Dougherty, B.A.21
McKenney, K.22
Adams, M.D.23
Loftus, B.24
Peterson, S.25
Reich, C.I.26
McNeil, L.K.27
Badger, J.H.28
Glodek, A.29
Zhou, L.30
Overbeek, R.31
Gocayne, J.D.32
Wiedman, J.F.33
McDonald, L.34
Utterback, T.35
Cotton, M.D.36
Spriggs, T.37
Artiach, P.38
Kaine, B.P.39
Sykes, S.M.40
Sadow, P.W.41
D'Andrea, K.P.42
Bowman, C.43
Fujii, C.44
Garland, S.A.45
Mason, T.M.46
Olsen, G.J.47
Fraser, C.M.48
Smith, H.O.49
Woese, C.R.50
Craig Venter, J.51
more..
-
2
-
-
0025262173
-
Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): A vehicle for direct determination of three dimensional structure
-
Hendrickson WA, Horton JR, LeMaster DM (1990) Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure. EMBO J 9:1665-1672. (Pubitemid 20137025)
-
(1990)
EMBO Journal
, vol.9
, Issue.5
, pp. 1665-1672
-
-
Hendrickson, W.A.1
Horton, J.R.2
Lemaster, D.M.3
-
3
-
-
0026095584
-
Determination of macromolecular structures from anomalous diffraction of synchrotron radiation
-
Hendrickson WA (1991) Determination of macromolecular structures from anomalous diffraction of synchrotron radiation. Science 254:51-58.
-
(1991)
Science
, vol.254
, pp. 51-58
-
-
Hendrickson, W.A.1
-
4
-
-
33846041078
-
The universal protein resource (UniProt)
-
for UniProt Consortium
-
Bairoch A, Bougueleret L, Altairac S, Amendolia V, Auchincloss A, Puy GA, Axelsen K, Baratin D, Blatter MC, Boeckmann B, Bollondi L, Boutet E, Quintaje SB, Breuza L, Bridge A, Saux VBL, deCastro E, Ciampina L, Coral D, Coudert E, Cusin I, David F, Delbard G, Dornevil D, Duek-Roggli P, Duvaud S, Estreicher A, Famiglietti L, Farriol-Mathis N, Ferro S, Feuermann M, Gasteiger E, Gateau A, Gehant S, Gerritsen V, Gos A, Gruaz-Gumowski N, Hinz U, Hulo C, Hulo N, Innocenti A, James J, Jain E, Jimenez S, Jungo F, Junker V, Keller G, Lachaize C, Lane-Guermonprez L, Langendijk-Genevaux P, Lara V, Le Mercier P, Lieberherr D, Lima TD, Mangold V, Martin X, Michoud K, Moinat M, Morgat A, Nicolas M, Paesano S, Pedruzzi I, Perret D, Phan I, Pilbout S, Pillet V, Poux S, Pozzato M, Redaschi N, Reynaud S, Rivoire C, Roechert B, Sapsezian C, Schneider M, Sigrist C, Sonesson K, Staehli S, Stutz A, Sundaram S, Tognolli M, Verbregue L, Veuthey AL, Vitorello C, Yip L, Zuletta LF, Apweiler R, Alam-Faruque Y, Barrell D, Bower L, Browne P, Chan WM, Daugherty L, Donate ES, Eberhardt R, Fedotov A, Foulger R, Frigerio G, Garavelli J, Golin R, Horne A, Jacobsen J, Kleen M, Kersey P, Laiho K, Legge D, Magrane M, Martin MJ, Monteiro P, O'Donovan C, Orchard S, O'Rourke J, Patient S, Pruess M, Sitnov A, Whitefield E, Wieser D, Lin Q, Rynbeek M, di Martino G, Donnelly M, van Rensburg P, Wu C, Arighi C, Arminski L, Barker W, Chen YX, Crooks D, Hu ZZ, Hua HK, Huang HZ, Kahsay R, Mazumder R, McGarvey P, Natale D;for UniProt Consortium (2007) The universal protein resource (UniProt). Nucleic Acids Res 35:D193-D197.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Bairoch, A.1
Bougueleret, L.2
Altairac, S.3
Amendolia, V.4
Auchincloss, A.5
Puy, G.A.6
Axelsen, K.7
Baratin, D.8
Blatter, M.C.9
Boeckmann, B.10
Bollondi, L.11
Boutet, E.12
Quintaje, S.B.13
Breuza, L.14
Bridge, A.15
Saux, V.B.L.16
DeCastro, E.17
Ciampina, L.18
Coral, D.19
Coudert, E.20
Cusin, I.21
David, F.22
Delbard, G.23
Dornevil, D.24
Duek-Roggli, P.25
Duvaud, S.26
Estreicher, A.27
Famiglietti, L.28
Farriol-Mathis, N.29
Ferro, S.30
Feuermann, M.31
Gasteiger, E.32
Gateau, A.33
Gehant, S.34
Gerritsen, V.35
Gos, A.36
Gruaz-Gumowski, N.37
Hinz, U.38
Hulo, C.39
Hulo, N.40
Innocenti, A.41
James, J.42
Jain, E.43
Jimenez, S.44
Jungo, F.45
Junker, V.46
Keller, G.47
Lachaize, C.48
Lane-Guermonprez, L.49
Langendijk-Genevaux, P.50
Lara, V.51
Le Mercier, P.52
Lieberherr, D.53
Lima, T.D.54
Mangold, V.55
Martin, X.56
Michoud, K.57
Moinat, M.58
Morgat, A.59
Nicolas, M.60
Paesano, S.61
Pedruzzi, I.62
Perret, D.63
Phan, I.64
Pilbout, S.65
Pillet, V.66
Poux, S.67
Pozzato, M.68
Redaschi, N.69
Reynaud, S.70
Rivoire, C.71
Roechert, B.72
Sapsezian, C.73
Schneider, M.74
Sigrist, C.75
Sonesson, K.76
Staehli, S.77
Stutz, A.78
Sundaram, S.79
Tognolli, M.80
Verbregue, L.81
Veuthey, A.L.82
Vitorello, C.83
Yip, L.84
Zuletta, L.F.85
Apweiler, R.86
Alam-Faruque, Y.87
Barrell, D.88
Bower, L.89
Browne, P.90
Chan, W.M.91
Daugherty, L.92
Donate, E.S.93
Eberhardt, R.94
Fedotov, A.95
Foulger, R.96
Frigerio, G.97
Garavelli, J.98
Golin, R.99
more..
-
5
-
-
0034666108
-
STRING: A web-server to retrieve and display the repeatedly occurring neighbourhood of a gene
-
Snel B, Lehmann G, Bork P, Huynen MA (2000) STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. Nucleic Acids Res 28:3442-3444.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 3442-3444
-
-
Snel, B.1
Lehmann, G.2
Bork, P.3
Huynen, M.A.4
-
6
-
-
0037250152
-
STRING: A database of predicted functional associations between proteins
-
DOI 10.1093/nar/gkg034
-
von Mering C, Huynen M, Jaeggi D, Schmidt S, Bork P, Snel B (2003) STRING: a database of predicted functional associations between proteins. Nucleic Acids Res 31:258-261. (Pubitemid 36150379)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 258-261
-
-
Von Mering, C.1
Huynen, M.2
Jaeggi, D.3
Schmidt, S.4
Bork, P.5
Snel, B.6
-
7
-
-
13444249988
-
STRING: Known and predicted protein-protein associations, integrated and transferred across organisms
-
DOI 10.1093/nar/gki005
-
von Mering C, Jensen LJ, Snel B, Hooper SD, Krupp M, Foglierini M, Jouffre N, Huynen MA, Bork P (2005) STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res 33:D433-D437. (Pubitemid 40207910)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.DATABASE ISS
-
-
Von Mering, C.1
Jensen, L.J.2
Snel, B.3
Hooper, S.D.4
Krupp, M.5
Foglierini, M.6
Jouffre, N.7
Huynen, M.A.8
Bork, P.9
-
8
-
-
33846086800
-
STRING 7 - Recent developments in the integration and prediction of protein interactions
-
DOI 10.1093/nar/gkl825
-
von Mering C, Jensen LJ, Kuhn M, Chaffron S, Doerks T, Kruger B, Snel B, Bork P (2007) STRING 7 - recent developments in the integration and prediction of protein interactions. Nucleic Acids Res 35:D358-D362. (Pubitemid 46056231)
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.SUPPL. 1
-
-
Von Mering, C.1
Jensen, L.J.2
Kuhn, M.3
Chaffron, S.4
Doerks, T.5
Kruger, B.6
Snel, B.7
Bork, P.8
-
9
-
-
33747593473
-
Use of PYMOL as a communications tool for molecular science
-
DeLano WL (2004) Use of PYMOL as a communications tool for molecular science. Abstr Papers Am Chem Soc 228:U313-U314.
-
(2004)
Abstr Papers Am Chem Soc
, vol.228
-
-
DeLano, W.L.1
-
10
-
-
0032169688
-
PQS: A protein quaternary structure file server
-
DOI 10.1016/S0968-0004(98)01253-5, PII S0968000498012535
-
Henrick K, Thornton JM (1998) PQS: a protein quaternary structure file server. Trends Biochem Sci 23: 358-361. (Pubitemid 28461869)
-
(1998)
Trends in Biochemical Sciences
, vol.23
, Issue.9
, pp. 358-361
-
-
Henrick, K.1
Thornton, J.M.2
-
11
-
-
0029109468
-
Protein-protein interactions - A review of protein dimer structures
-
Jones S, Thornton JM (1995) Protein-protein interactions - a review of protein dimer structures. Prog Biophys Mol Biol 63:31-65.
-
(1995)
Prog Biophys Mol Biol
, vol.63
, pp. 31-65
-
-
Jones, S.1
Thornton, J.M.2
-
12
-
-
24344436818
-
NF-kappaB RelB forms an intertwined homodimer
-
DOI 10.1016/j.str.2005.06.018, PII S0969212605002790
-
Huang DB, Vu D, Ghosh G (2005) NF-kappaB RelB forms an intertwined homodimer. Structure 13:1365-1373. (Pubitemid 41262103)
-
(2005)
Structure
, vol.13
, Issue.9
, pp. 1365-1373
-
-
Huang, D.-B.1
Vu, D.2
Ghosh, G.3
-
13
-
-
58549113633
-
Coupling of domain swapping to kinetic stability in a thioredoxin mutant
-
Garcia-Pino A, Martinez-Rodriguez S, Wahni K, Wyns L, Loris R, Messens J (2009) Coupling of domain swapping to kinetic stability in a thioredoxin mutant. J Mol Biol 385:1590-1599.
-
(2009)
J Mol Biol
, vol.385
, pp. 1590-1599
-
-
Garcia-Pino, A.1
Martinez-Rodriguez, S.2
Wahni, K.3
Wyns, L.4
Loris, R.5
Messens, J.6
-
14
-
-
23844478657
-
Structure of gramicidin D-RbCl complex at atomic resolution from low-temperature synchrotron data: Interactions of double-stranded gramicidin channel contents and cations with channel wall
-
DOI 10.1107/S0907444905000399
-
Glowka ML, Olczak A, Bojarska J, Szczesio M, Duax WL, Burkhart BM, Pangborn WA, Langs DA, Wawrzak Z (2005) Structure of gramicidin D-RbCl complex at atomic resolution from low-temperature synchrotron data: interactions of double-stranded gramicidin channel contents and cations with channel wall. Acta Crystallogr D Biol Crystallogr 61:433-441. (Pubitemid 43934603)
-
(2005)
Acta Crystallographica Section D: Biological Crystallography
, vol.61
, Issue.4
, pp. 433-441
-
-
Glowka, M.L.1
Olczak, A.2
Bojarska, J.3
Szczesio, M.4
Duax, W.L.5
Burkhart, B.M.6
Pangborn, W.A.7
Langs, D.A.8
Wawrzak, Z.9
-
15
-
-
14844296372
-
The antiviral antibiotic feglymycin: First direct-methods solution of a 1000 + equal-atom structure
-
DOI 10.1002/anie.200461933
-
Bunkoczi G, Vertesy L, Sheldrick GM (2005) The antiviral antibiotic feglymycin: first direct-methods solution of a 1000+equal-atom structure. Angew Chem Int Ed 44: 1340-1342. (Pubitemid 40343542)
-
(2005)
Angewandte Chemie - International Edition
, vol.44
, Issue.9
, pp. 1340-1342
-
-
Bunkoczi, G.1
Vertesy, L.2
Sheldrick, G.M.3
-
16
-
-
0031830332
-
Recent advances in the high resolution structures of bacterial channels: Gramicidin A
-
Wallace BA (1998) Recent advances in the high resolution structures of bacterial channels: gramicidin A. J Struct Biol 121:123-141.
-
(1998)
J Struct Biol
, vol.121
, pp. 123-141
-
-
Wallace, B.A.1
-
17
-
-
0030770294
-
Oligomer formation by 3D domain swapping: A model for protein assembly and misassembly
-
Schlunegger MP, Bennett MJ, Eisenberg D (1997) Oligomer formation by 3D domain swapping: a model for protein assembly and misassembly. Adv Protein Chem 50:61-122.
-
(1997)
Adv Protein Chem
, vol.50
, pp. 61-122
-
-
Schlunegger, M.P.1
Bennett, M.J.2
Eisenberg, D.3
-
18
-
-
0036108484
-
3D domain swapping: As domains continue to swap
-
DOI 10.1110/ps.0201402
-
Liu Y, Eisenberg D (2002) 3D domain swapping: as domains continue to swap. Protein Sci 11:1285-1299. (Pubitemid 34547201)
-
(2002)
Protein Science
, vol.11
, Issue.6
, pp. 1285-1299
-
-
Liu, Y.1
Eisenberg, D.2
-
20
-
-
4143141894
-
Snapshot of protein structure evolution reveals conservation of functional dimerization through intertwined folding
-
DOI 10.1016/j.str.2004.06.011, PII S0969212604002394
-
Chirgadze DY, Demydchuk M, Becker M, Moran S, Paoli M (2004) Snapshot of protein structure evolution reveals conservation of functional dimerization through intertwined folding. Structure 12:1489-1494. (Pubitemid 39092093)
-
(2004)
Structure
, vol.12
, Issue.8
, pp. 1489-1494
-
-
Chirgadze, D.Y.1
Demydchuk, M.2
Becker, M.3
Moran, S.4
Paoli, M.5
-
21
-
-
59849087892
-
Intertwined dimeric structure for the SH3 domain of the c-Src tyrosine kinase induced by polyethylene glycol binding
-
Camara-Artigas A, Martin-Garcia JM, Morel B, Ruiz-Sanz J, Luque I (2009) Intertwined dimeric structure for the SH3 domain of the c-Src tyrosine kinase induced by polyethylene glycol binding. FEBS Lett 583: 749-753.
-
(2009)
FEBS Lett
, vol.583
, pp. 749-753
-
-
Camara-Artigas, A.1
Martin-Garcia, J.M.2
Morel, B.3
Ruiz-Sanz, J.4
Luque, I.5
-
22
-
-
16844386953
-
Morphological aspects of oligomeric protein structures
-
DOI 10.1016/j.pbiomolbio.2004.07.010
-
Ponstingl H, Thomas KB, Gorse D, Thornton JM (2005) Morphological aspects of oligorneric protein structures. Prog Biophys Mol Biol 89:9-35. (Pubitemid 40483213)
-
(2005)
Progress in Biophysics and Molecular Biology
, vol.89
, Issue.1
, pp. 9-35
-
-
Ponstingl, H.1
Kabir, T.2
Gorse, D.3
Thornton, J.M.4
-
23
-
-
0022419375
-
Aromatic - Aromatic interaction - A mechanism of protein-structure stabilization
-
Burley SK, Petsko GA (1985) Aromatic - aromatic interaction - a mechanism of protein-structure stabilization. Science 229:23-28.
-
(1985)
Science
, vol.229
, pp. 23-28
-
-
Burley, S.K.1
Petsko, G.A.2
-
24
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
25
-
-
0038386050
-
3D-Jury: A simple approach to improve protein structure predictions
-
DOI 10.1093/bioinformatics/btg124
-
Ginalski K, Elofsson A, Fischer D, Rychlewski L (2003) 3D-Jury: a simple approach to improve protein structure predictions. Bioinformatics 19:1015-1018. (Pubitemid 36675823)
-
(2003)
Bioinformatics
, vol.19
, Issue.8
, pp. 1015-1018
-
-
Ginalski, K.1
Elofsson, A.2
Fischer, D.3
Rychlewski, L.4
-
26
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov IN, Bourne PE (1998) Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng 11:739-747.
-
(1998)
Protein Eng
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
27
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
DOI 10.1006/jmbi.1993.1489
-
Holm L, Sander C (1993) Protein structure comparison by alignment of distance matrices. J Mol Biol 233:123-138. (Pubitemid 23288916)
-
(1993)
Journal of Molecular Biology
, vol.233
, Issue.1
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
-
28
-
-
0028871926
-
Dali: A network tool for protein structure comparison
-
Holm L, Sander C (1995) Dali: a network tool for protein structure comparison. Trends Biochem Sci 20:478-480.
-
(1995)
Trends Biochem Sci
, vol.20
, pp. 478-480
-
-
Holm, L.1
Sander, C.2
-
29
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
DOI 10.1107/S0907444904026460
-
Krissinel E, Henrick K (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr D Biol Crystallogr 60:2256-2268. (Pubitemid 41742778)
-
(2004)
Acta Crystallographica Section D: Biological Crystallography
, vol.60
, Issue.12 I
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
30
-
-
17644392830
-
TM-align: A protein structure alignment algorithm based on the TM-score
-
DOI 10.1093/nar/gki524
-
Zhang Y, Skolnick J (2005) TM-align: a protein structure alignment algorithm based on the TM-score. Nucleic Acids Res 33:2302-2309. (Pubitemid 41439897)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.7
, pp. 2302-2309
-
-
Zhang, Y.1
Skolnick, J.2
-
31
-
-
0028961335
-
Scop - A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) Scop - a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247:536-540.
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
32
-
-
58149187899
-
The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies
-
Cuff AL, Sillitoe I, Lewis T, Redfern OC, Garratt R, Thornton J, Orengo CA (2009) The CATH classification revisited-architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res 37:D310-D314.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cuff, A.L.1
Sillitoe, I.2
Lewis, T.3
Redfern, O.C.4
Garratt, R.5
Thornton, J.6
Orengo, C.A.7
-
33
-
-
0030777303
-
CATH - A hierarchic classification of protein domain structures
-
Orengo CA, Michie AD, Jones S, Jones DT, Swindells MB, Thornton JM (1997) CATH - a hierarchic classification of protein domain structures. Structure 5:1093-1108. (Pubitemid 27393093)
-
(1997)
Structure
, vol.5
, Issue.8
, pp. 1093-1108
-
-
Orengo, C.A.1
Michie, A.D.2
Jones, S.3
Jones, D.T.4
Swindells, M.B.5
Thornton, J.M.6
-
34
-
-
0035190121
-
Structure of Thermotoga maritima stationary phase survival protein SurE: A novel acid phosphatase
-
DOI 10.1016/S0969-2126(01)00675-X, PII S096921260100675X
-
Zhang R-G, Skarina T, Katz JE, Beasley S, Khachatryan A, Vyas S, Arrowsmith CH, Clarke S, Edwards A, Joachimiak A, Savchenko A (2001) Structure of Thermotoga maritima stationary phase survival protein SurE: a novel acid phosphatase. Structure 9:1095-1106. (Pubitemid 33092111)
-
(2001)
Structure
, vol.9
, Issue.11
, pp. 1095-1106
-
-
Zhang, R.-G.1
Skarina, T.2
Katz, J.E.3
Beasley, S.4
Khachatryan, A.5
Vyas, S.6
Arrowsmith, C.H.7
Clarke, S.8
Edwards, A.9
Joachimiak, A.10
Savchenko, A.11
-
35
-
-
33644875124
-
The Structural Biology Center 19ID undulator beamline: Facility specifications and protein crystallographic results
-
Rosenbaum G, Alkire RW, Evans G, Rotella FJ, Lazarski K, Zhang RG, Ginell SL, Duke N, Naday I, Lazarz J, Molitsky MJ, Keefe L, Gonczy J, Rock L, Sanishvili R, Walsh MA, Westbrook E, Joachimiak A (2006) The Structural Biology Center 19ID undulator beamline: facility specifications and protein crystallographic results. J Synchrotron Radiat 13:30-45.
-
(2006)
J Synchrotron Radiat
, vol.13
, pp. 30-45
-
-
Rosenbaum, G.1
Alkire, R.W.2
Evans, G.3
Rotella, F.J.4
Lazarski, K.5
Zhang, R.G.6
Ginell, S.L.7
Duke, N.8
Naday, I.9
Lazarz, J.10
Molitsky, M.J.11
Keefe, L.12
Gonczy, J.13
Rock, L.14
Sanishvili, R.15
Walsh, M.A.16
Westbrook, E.17
Joachimiak, A.18
-
36
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
DOI 10.1016/S0076-6879(97)76066-X
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276:307-326. (Pubitemid 27085611)
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
38
-
-
33745933955
-
HKL-3000: The integration of data reduction and structure solution - From diffraction images to an initial model in minutes
-
DOI 10.1107/S0907444906019949
-
Minor W, Cymborowski M, Otwinowski Z, Chruszcz M (2006) HKL-3000: the integration of data reduction and structure solution - from diffraction images to an initial model in minutes. Acta Crystallogr D Biol Crystallogr 62: 859-866. (Pubitemid 44125661)
-
(2006)
Acta Crystallographica Section D: Biological Crystallography
, vol.62
, Issue.8
, pp. 859-866
-
-
Minor, W.1
Cymborowski, M.2
Otwinowski, Z.3
Chruszcz, M.4
-
40
-
-
0013054388
-
Macromolecular phasing with SHELXE
-
Sheldrick GM (2002) Macromolecular phasing with SHELXE. Z Kristallogr 217:644-650.
-
(2002)
Z Kristallogr
, vol.217
, pp. 644-650
-
-
Sheldrick, G.M.1
-
41
-
-
0002634621
-
Proceedings of the CCP4 study weekend
-
(eds. Wolf W, Evans P.R, Leslie A.G.W), Daresbury Laboratory: Warrington, UK
-
Otwinowski Z (1991) Proceedings of the CCP4 study weekend. Isomorphous replacement and anomalous scattering (eds. Wolf W, Evans P.R, Leslie A.G.W), Daresbury Laboratory: Warrington, UK pp. 80-86.
-
(1991)
Isomorphous Replacement and Anomalous Scattering
, pp. 80-86
-
-
Otwinowski, Z.1
-
42
-
-
0032872798
-
Density modification for macromolecular phase improvement
-
Cowtan KD, Zhang KY (1999) Density modification for macromolecular phase improvement. Prog Biophys Mol Biol 72:245-270.
-
(1999)
Prog Biophys Mol Biol
, vol.72
, pp. 245-270
-
-
Cowtan, K.D.1
Zhang, K.Y.2
-
43
-
-
0000449646
-
Improvement of macromolecular electron-density maps by the simultaneous application of real and reciprocal space constraints
-
Cowtan KD, Main P (1993) Improvement of macromolecular electron-density maps by the simultaneous application of real and reciprocal space constraints. Acta Crystallogr D Biol Crystallogr 49:148-157.
-
(1993)
Acta Crystallogr D Biol Crystallogr
, vol.49
, pp. 148-157
-
-
Cowtan, K.D.1
Main, P.2
-
44
-
-
0036848846
-
Automated structure solution, density modification and model building
-
Terwilliger TC (2002) Automated structure solution, density modification and model building. Acta Crystallogr D Biol Crystallogr 58:1937-1940.
-
(2002)
Acta Crystallogr D Biol Crystallogr
, vol.58
, pp. 1937-1940
-
-
Terwilliger, T.C.1
-
45
-
-
0347383761
-
SOLVE and RESOLVE: Automated structure solution and density modification
-
Terwilliger TC (2003) SOLVE and RESOLVE: automated structure solution and density modification. Methods Enzymol 374:22-37.
-
(2003)
Methods Enzymol
, vol.374
, pp. 22-37
-
-
Terwilliger, T.C.1
-
46
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
CCP4
-
CCP4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 50:760-763.
-
(1994)
Acta Crystallogr D Biol Crystallogr
, vol.50
, pp. 760-763
-
-
-
47
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
DOI 10.1038/8263
-
Perrakis A, Morris R, Lamzin VS (1999) Automated protein model building combined with iterative structure refinement. Nat Struct Biol 6:458-463. (Pubitemid 29218016)
-
(1999)
Nature Structural Biology
, vol.6
, Issue.5
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
50
-
-
0037441653
-
Structure validation by Calpha geometry: Phi, psi and Cbeta deviation
-
Lovell SC, Davis IW, Arendall WB, 3rd, de Bakker PI, Word JM, Prisant MG, Richardson JS, Richardson DC (2003) Structure validation by Calpha geometry: phi, psi and Cbeta deviation. Proteins 50:437-450.
-
(2003)
Proteins
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall III, W.B.3
De Bakker, P.I.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
51
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
DOI 10.1093/bioinformatics/btl158
-
Li W, Godzik A (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22:1658-1659. (Pubitemid 43985301)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
52
-
-
33644872068
-
BioShell - A package of tools for structural biology computations
-
DOI 10.1093/bioinformatics/btk037
-
Gront D, Kolinski A (2006) BioShell - a package of tools for structural biology computations. Bioinformatics 22:621-622. (Pubitemid 43372826)
-
(2006)
Bioinformatics
, vol.22
, Issue.5
, pp. 621-622
-
-
Gront, D.1
Kolinski, A.2
-
53
-
-
0020997912
-
Dictionary of protein secondary structure-pattern-recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C (1983) Dictionary of protein secondary structure-pattern-recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
|