-
1
-
-
84986512474
-
A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks,B.R. et al. (1983) A program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem., 4, 187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
-
2
-
-
1942423619
-
MMTSB Tool Set: Enhanced sampling and multiscale modeling methods for applications in structural biology
-
Feig,M. et al. (2004) MMTSB Tool Set: Enhanced sampling and multiscale modeling methods for applications in structural biology. J. Mol. Graph. Model., 22, 377-395.
-
(2004)
J. Mol. Graph. Model.
, vol.22
, pp. 377-395
-
-
Feig, M.1
-
3
-
-
25144494770
-
HCPM - Program for hierarchical clustering of protein models
-
Gront,D. and Kolinski,A. (2005) HCPM - program for hierarchical clustering of protein models. Bioinformatics, 21, 3179-3180.
-
(2005)
Bioinformatics
, vol.21
, pp. 3179-3180
-
-
Gront, D.1
Kolinski, A.2
-
4
-
-
0344033635
-
PDB file parser and structure class implemented in Python
-
Hamelryck,T. and Manderick,B. (2003) PDB file parser and structure class implemented in Python. Bioinformatics, 19, 2308-2310.
-
(2003)
Bioinformatics
, vol.19
, pp. 2308-2310
-
-
Hamelryck, T.1
Manderick, B.2
-
5
-
-
3242779291
-
Protein modeling and structure prediction with a reduced representation
-
Kolinski,A. (2004) Protein modeling and structure prediction with a reduced representation. Acta. Biochim. Pol., 51, 349-371.
-
(2004)
Acta. Biochim. Pol.
, vol.51
, pp. 349-371
-
-
Kolinski, A.1
-
6
-
-
0038424321
-
Analysis and application of potential energy smoothing for global optimization
-
Pappu,R.V. et al. (1998) Analysis and application of potential energy smoothing for global optimization. J. Phys. Chem. B, 102, 9725-9742.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 9725-9742
-
-
Pappu, R.V.1
-
7
-
-
0029633186
-
AMBER, a computer program for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to elucidate the structures and energies of molecules
-
Pearlman,D.A. et al. (1995) AMBER, a computer program for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to elucidate the structures and energies of molecules. Comput. Phys. Commun., 91, 1-41.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 1-41
-
-
Pearlman, D.A.1
-
8
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
Rice,P. et al. (2000) EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet., 16, 276-277.
-
(2000)
Trends Genet.
, vol.16
, pp. 276-277
-
-
Rice, P.1
-
9
-
-
0032506030
-
Large-scale protein structure modeling of the Saccharomyces cerevisiae genome
-
Sanchez,R. and Sali,A. (1998) Large-scale protein structure modeling of the Saccharomyces cerevisiae genome. Proc. Natl Acad. Sci. USA, 95, 13597-13602.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 13597-13602
-
-
Sanchez, R.1
Sali, A.2
-
10
-
-
0042622380
-
SWISS-MODEL: An automated protein homology-modeling server
-
Schwede,T. et al. (2003) SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res., 31, 3381-3385.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3381-3385
-
-
Schwede, T.1
-
11
-
-
0031575423
-
MONSSTER: A method for folding globular proteins with a small number of distance restraints
-
Skolnick,J. et al. (1997) MONSSTER: A method for folding globular proteins with a small number of distance restraints. J. Mol. Biol., 265, 217-241.
-
(1997)
J. Mol. Biol.
, vol.265
, pp. 217-241
-
-
Skolnick, J.1
-
12
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich,J.E. et al. (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res., 12, 1611-1618.
-
(2002)
Genome Res.
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
|