메뉴 건너뛰기




Volumn 54, Issue 6, 2009, Pages 1287-1296

Fast multiplexed polymerase chain reaction for conventional and microfluidic short tandem repeat analysis

Author keywords

Forensic science; Microfluidics; Nontemplate nucleotide addition; Polymerase chain reaction; Short tandem repeat; Stutter

Indexed keywords

NUCLEOTIDE;

EID: 70350514201     PISSN: 00221198     EISSN: 15564029     Source Type: Journal    
DOI: 10.1111/j.1556-4029.2009.01200.x     Document Type: Article
Times cited : (52)

References (35)
  • 1
    • 0022372670 scopus 로고
    • Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia
    • Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, et al. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 1985 230 : 1350 1354.
    • (1985) Science , vol.230 , pp. 1350-1354
    • Saiki, R.K.1    Scharf, S.2    Faloona, F.3    Mullis, K.B.4    Horn, G.T.5    Erlich, H.A.6
  • 2
    • 0025939939 scopus 로고
    • DNA typing and genetic mapping with trimeric and tetrameric tandem repeats
    • Edwards A, Civitello A, Hammond HA, Caskey CT. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet 1991 49 : 746 756.
    • (1991) Am J Hum Genet , vol.49 , pp. 746-756
    • Edwards, A.1    Civitello, A.2    Hammond, H.A.3    Caskey, C.T.4
  • 3
    • 0026518648 scopus 로고
    • Survey of human and rat microsatellites
    • Beckman JS, Weber JL. Survey of human and rat microsatellites. Genomics 1992 12 : 627 631.
    • (1992) Genomics , vol.12 , pp. 627-631
    • Beckman, J.S.1    Weber, J.L.2
  • 4
    • 0024835377 scopus 로고
    • Automated DNA sequencing methods for detection and analysis of mutations: Applications to the Lesch-Nyhan syndrome
    • Edwards A, Gibbs RA, Nguyen PN, Ansorge W, Caskey CT. Automated DNA sequencing methods for detection and analysis of mutations: applications to the Lesch-Nyhan syndrome. Trans Assoc Am Physicians 1989 102 : 185 194.
    • (1989) Trans Assoc Am Physicians , vol.102 , pp. 185-194
    • Edwards, A.1    Gibbs, R.A.2    Nguyen, P.N.3    Ansorge, W.4    Caskey, C.T.5
  • 5
    • 0034990151 scopus 로고    scopus 로고
    • Validation of short tandem repeats (STRs) for forensic usage: Performance testing of fluorescent multiplex STR systems and analysis of authentic and simulated forensic samples
    • Moretti TR, Baumstark AL, Defenbaugh DA, Keys KM, Smerick JB, Budowle B. Validation of short tandem repeats (STRs) for forensic usage: performance testing of fluorescent multiplex STR systems and analysis of authentic and simulated forensic samples. J Forensic Sci 2001 46 : 647 660.
    • (2001) J Forensic Sci , vol.46 , pp. 647-660
    • Moretti, T.R.1    Baumstark, A.L.2    Defenbaugh, D.A.3    Keys, K.M.4    Smerick, J.B.5    Budowle, B.6
  • 6
    • 33644904034 scopus 로고    scopus 로고
    • Genetics and genomics of core short tandem repeat loci used in human identity testing
    • Butler JM. Genetics and genomics of core short tandem repeat loci used in human identity testing. J Forensic Sci 2006 51 : 253 265.
    • (2006) J Forensic Sci , vol.51 , pp. 253-265
    • Butler, J.M.1
  • 8
    • 77957579252 scopus 로고    scopus 로고
    • The CODIS STR Project: Evaluation of Fluorescent Multiplex STR Systems
    • 1998 Feb 9-14; San Francisco, CA. Colorado Springs, CO. American Academy of Forensic Sciences
    • Moretti TR. The CODIS STR Project: evaluation of fluorescent multiplex STR systems. Proceedings of the 50th Annual Meeting of the American Academy of Forensic Sciences; 1998 Feb 9-14; San Francisco, CA. Colorado Springs, CO : American Academy of Forensic Sciences, 1998.
    • (1998) Proceedings of the 50th Annual Meeting of the American Academy of Forensic Sciences
    • Moretti, T.R.1
  • 10
    • 0028182432 scopus 로고
    • TaqStart antibody: "hot start" PCR facilitated by a neutralizing monoclonal antibody directed against Taq DNA polymerase
    • Kellogg DE, Rybalkin I, Chen S, Mukhamedova N, Vlasik T, Siebert PD, et al. TaqStart antibody: "hot start" PCR facilitated by a neutralizing monoclonal antibody directed against Taq DNA polymerase. BioTechniques 1994 16 : 1134 1137.
    • (1994) BioTechniques , vol.16 , pp. 1134-1137
    • Kellogg, D.E.1    Rybalkin, I.2    Chen, S.3    Mukhamedova, N.4    Vlasik, T.5    Siebert, P.D.6
  • 12
    • 0031719262 scopus 로고    scopus 로고
    • Enhancement of PCR amplification yield and specificity using AmpliTaq Gold DNA polymerase
    • Moretti T, Koons B, Budowle B. Enhancement of PCR amplification yield and specificity using AmpliTaq Gold DNA polymerase. BioTechniques 1998 25 : 716 722.
    • (1998) BioTechniques , vol.25 , pp. 716-722
    • Moretti, T.1    Koons, B.2    Budowle, B.3
  • 13
    • 0344011118 scopus 로고    scopus 로고
    • Cold-sensitive mutants of Taq DNA polymerase provide a hot start for PCR
    • Kermekchiev MB, Tzekov A, Barnes WM. Cold-sensitive mutants of Taq DNA polymerase provide a hot start for PCR. Nucleic Acids Res 2003 31 : 6139 6147.
    • (2003) Nucleic Acids Res , vol.31 , pp. 6139-6147
    • Kermekchiev, M.B.1    Tzekov, A.2    Barnes, W.M.3
  • 14
    • 0011422423 scopus 로고    scopus 로고
    • Short tandem repeat (STR) interpretation guidelines
    • Scientific Working Group on DNA Analysis Methods (SWGDAM). Accessed February 10, 2008.
    • Scientific Working Group on DNA Analysis Methods (SWGDAM). Short tandem repeat (STR) interpretation guidelines. Forensic Sci Commun 2000 2 (3 http://www.fbi.gov/hq/lab/fsc/backissu/july2000/strig.htm. Accessed February 10, 2008.
    • (2000) Forensic Sci Commun , vol.2 , Issue.3
  • 15
    • 0043282586 scopus 로고    scopus 로고
    • The development of reduced size STR amplicons as tools for analysis of degraded DNA
    • Butler JM, Shen Y, McCord BR. The development of reduced size STR amplicons as tools for analysis of degraded DNA. J Forensic Sci 2003 48 : 1054 1064.
    • (2003) J Forensic Sci , vol.48 , pp. 1054-1064
    • Butler, J.M.1    Shen, Y.2    McCord, B.R.3
  • 18
    • 0029989857 scopus 로고    scopus 로고
    • Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device
    • Woolley AT, Hadley D, Landre P, deMello AJ, Mathies RA, Northrup MA. Functional integration of PCR amplification and capillary electrophoresis in a microfabricated DNA analysis device. Anal Chem 1996 68 : 4081 4086.
    • (1996) Anal Chem , vol.68 , pp. 4081-4086
    • Woolley, A.T.1    Hadley, D.2    Landre, P.3    Demello, A.J.4    Mathies, R.A.5    Northrup, M.A.6
  • 19
    • 0032011519 scopus 로고    scopus 로고
    • A miniature analytical instrument for nucleic acids based on micromachined silicon reaction chambers
    • Northrup MA, Benett B, Hadley D, Landre P, Lehew S, Richards J, et al. A miniature analytical instrument for nucleic acids based on micromachined silicon reaction chambers. Anal Chem 1998 70 : 918 922.
    • (1998) Anal Chem , vol.70 , pp. 918-922
    • Northrup, M.A.1    Benett, B.2    Hadley, D.3    Landre, P.4    Lehew, S.5    Richards, J.6
  • 20
    • 0035253329 scopus 로고    scopus 로고
    • Single-molecule DNA amplification and analysis in an integrated microfluidic device
    • Lagally ET, Medintz I, Mathies RA. Single-molecule DNA amplification and analysis in an integrated microfluidic device. Anal Chem 2001 73 : 565 570.
    • (2001) Anal Chem , vol.73 , pp. 565-570
    • Lagally, E.T.1    Medintz, I.2    Mathies, R.A.3
  • 22
    • 34547839765 scopus 로고    scopus 로고
    • Miniaturized PCR chips for nucleic acid amplification and analysis: Latest advances and future trends
    • Zhang C, Xing D. Miniaturized PCR chips for nucleic acid amplification and analysis: latest advances and future trends. Nucleic Acids Res 2007 35 : 4223 4237.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4223-4237
    • Zhang, C.1    Xing, D.2
  • 23
    • 0032524099 scopus 로고    scopus 로고
    • Chemical amplification: Continuous-flow PCR on a chip
    • Kopp MU, Mello AJ, Manz A. Chemical amplification: continuous-flow PCR on a chip. Science 1998 280 : 1046 1048.
    • (1998) Science , vol.280 , pp. 1046-1048
    • Kopp, M.U.1    Mello, A.J.2    Manz, A.3
  • 24
    • 0037439263 scopus 로고    scopus 로고
    • Microfabricated device for DNA and RNA amplification by continuous-flow polymerase chain reaction and reverse transcription-polymerase chain reaction with cycle number selection
    • Obeid PJ, Christopoulos TK, Crabtree HJ, Backhouse CJ. Microfabricated device for DNA and RNA amplification by continuous-flow polymerase chain reaction and reverse transcription-polymerase chain reaction with cycle number selection. Anal Chem 2003 75 : 288 295.
    • (2003) Anal Chem , vol.75 , pp. 288-295
    • Obeid, P.J.1    Christopoulos, T.K.2    Crabtree, H.J.3    Backhouse, C.J.4
  • 25
    • 33847676392 scopus 로고    scopus 로고
    • Integrated portable polymerase chain reaction-capillary electrophoresis microsystem for rapid forensic short tandem repeat typing
    • Liu P, Seo TS, Beyor N, Shin KJ, Scherer JR, Mathies RA. Integrated portable polymerase chain reaction-capillary electrophoresis microsystem for rapid forensic short tandem repeat typing. Anal Chem 2007 79 : 1881 1889.
    • (2007) Anal Chem , vol.79 , pp. 1881-1889
    • Liu, P.1    Seo, T.S.2    Beyor, N.3    Shin, K.J.4    Scherer, J.R.5    Mathies, R.A.6
  • 26
    • 29244483112 scopus 로고    scopus 로고
    • Low-volume amplification on chemically structured chips using the PowerPlex16 DNA amplification kit
    • Schmidt U, Lutz-Bonengel S, Weisser HJ, Sanger T, Pollak S, Schon U, et al. Low-volume amplification on chemically structured chips using the PowerPlex16 DNA amplification kit. Int J Legal Med 2006 120 : 42 8.
    • (2006) Int J Legal Med , vol.120 , pp. 42-48
    • Schmidt, U.1    Lutz-Bonengel, S.2    Weisser, H.J.3    Sanger, T.4    Pollak, S.5    Schon, U.6
  • 27
    • 70350495418 scopus 로고    scopus 로고
    • Advances in biochip-based analysis: A rapid field-based approach
    • 2007 Feb 19-24; San Antonio, TX. Colorado Springs, CO. American Academy of Forensic Sciences
    • Pyzowski P, Tan E. Advances in biochip-based analysis: a rapid field-based approach. Proceedings of the 59th Annual Meeting of the American Academy of Forensic Sciences; 2007 Feb 19-24; San Antonio, TX. Colorado Springs, CO : American Academy of Forensic Sciences, 2007.
    • (2007) Proceedings of the 59th Annual Meeting of the American Academy of Forensic Sciences
    • Pyzowski, P.1    Tan, E.2
  • 28
    • 70350506840 scopus 로고    scopus 로고
    • Accessed October 31, 2008
    • http://www.takarabiousa.com/files/guides/ 0f10435e7d03a3c78e3f01c2048f6b65.pdf. Accessed October 31, 2008.
  • 30
    • 0026865024 scopus 로고
    • Preferential PCR amplification of alleles: Mechanisms and solutions
    • Walsh PS, Erlich HA, Higuchi R. Preferential PCR amplification of alleles: mechanisms and solutions. PCR Methods Appl 1992 1 : 241 250.
    • (1992) PCR Methods Appl , vol.1 , pp. 241-250
    • Walsh, P.S.1    Erlich, H.A.2    Higuchi, R.3
  • 32
    • 0035180791 scopus 로고    scopus 로고
    • TWGDAM validation of the AmpFlSTR Profiler Plus and AmpFlSTR COfiler STR multiplex systems using capillary electrophoresis
    • LaFountain MJ, Schwartz MB, Svete PA, Walkinshaw MA, Buel E. TWGDAM validation of the AmpFlSTR Profiler Plus and AmpFlSTR COfiler STR multiplex systems using capillary electrophoresis. J Forensic Sci 2001 46 : 1191 1198.
    • (2001) J Forensic Sci , vol.46 , pp. 1191-1198
    • Lafountain, M.J.1    Schwartz, M.B.2    Svete, P.A.3    Walkinshaw, M.A.4    Buel, E.5
  • 33
    • 4444303169 scopus 로고    scopus 로고
    • Systematic analysis of stutter percentages and allele peak height and peak area ratios at heterozygous STR loci for forensic casework and database samples
    • Leclair B, Fregeau CJ, Bowen KL, Fourney RM. Systematic analysis of stutter percentages and allele peak height and peak area ratios at heterozygous STR loci for forensic casework and database samples. J Forensic Sci 2004 49 : 968 980.
    • (2004) J Forensic Sci , vol.49 , pp. 968-980
    • Leclair, B.1    Fregeau, C.J.2    Bowen, K.L.3    Fourney, R.M.4
  • 34
    • 0001506104 scopus 로고    scopus 로고
    • Modulation of non-templated nucleotide addition by Taq DNA polymerase: Primer modifications that facilitate genotyping
    • 1008-1010
    • Brownstein MJ, Carpten JD, Smith JR. Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. BioTechniques 1996 20 : 1004 1006, 1008-10.
    • (1996) BioTechniques , vol.20 , pp. 1004-1006
    • Brownstein, M.J.1    Carpten, J.D.2    Smith, J.R.3
  • 35
    • 0029894375 scopus 로고    scopus 로고
    • Sequence analysis and characterization of stutter products at the tetranucleotide repeat locus vWA
    • Walsh PS, Fildes NJ, Reynolds R. Sequence analysis and characterization of stutter products at the tetranucleotide repeat locus vWA. Nucleic Acids Res 1996 24 : 2807 2812.
    • (1996) Nucleic Acids Res , vol.24 , pp. 2807-2812
    • Walsh, P.S.1    Fildes, N.J.2    Reynolds, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.