Fodinibacter luteus gen. nov., sp. nov., an actinobacterium isolated from a salt mine

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 9, 2009, Pages 2185-2190

  Wang, Zhi Gang ^a   Wang, Yong Xia ^a   Liu, Ji Hui ^a   Chen, Yi Guang ^a,b   Zhang, Xiao Xia ^c   Wen, Meng Liang ^a   Xu, Li Hua ^a   Peng, Qian ^a   Cui, Xiao Long ^a  

^a YUNNAN UNIVERSITY   (China)

^b JISHOU UNIVERSITY   (China)

^c INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CARDIOLIPIN; DIAMINO ACID; DIAMINOPIMELIC ACID; FATTY ACID; MENAQUINONE; PHOSPHATIDYLETHANOLAMINE; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLINOSITOL; RNA 16S; CATALASE; FARNOQUINONE; OXIDOREDUCTASE; PHOSPHOLIPID; RIBOSOME DNA;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; FODINIBACTER LUTEUS; GENE SEQUENCE; GENETIC DIFFERENCE; GRAM POSITIVE BACTERIUM; INTRASPORANGIACEAE; JANIBACTER; KNOELLIA; KRIBBIA; LAPILLICOCCUS; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; ORYZIHUMUS LEPTOCRESCENS; PHYCICOCCUS; PHYLOGENY; PRIORITY JOURNAL; TERRABACTER; ACTINOMYCETALES; AEROBIC METABOLISM; CELL WALL; CHEMISTRY; CHINA; CLASSIFICATION; CLUSTER ANALYSIS; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHYSIOLOGY;

INTRASPORANGIACEAE; JANIBACTER; KNOELLIA; KRIBBIA; ORYZIHUMUS; ORYZIHUMUS LEPTOCRESCENS; POSIBACTERIA; TERRABACTER;

ACTINOMYCETALES; AEROBIOSIS; BASE COMPOSITION; CATALASE; CELL WALL; CHINA; CLUSTER ANALYSIS; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; VITAMIN K 2;

EID: 70350507107     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.006882-0     Document Type: Article

References (46)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Becker, B., Lechevalier, M. P. & Lechevalier, H. A. (1965). Chemical composition of cell-wall preparation from strains of various formgenera of aerobic actinomycetes. Appl Microbiol 13, 236-243.
3. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
4. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
5. Collins, M. D., Dorsch, M. & Stackebrandt, E. (1989). Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov. Int J Syst Bacteriol 39, 1-6.
6. Collins, M. D., Routh, J., Saraswathy, A., Lawson, P. A., Schumann, P., Welinder-Olsson, C. & Falsen, E. (2004). Arsenicicoccus bolidensis gen. nov., sp. nov., a novel actinomycete isolated from contaminated lake sediment. Int J Syst Evol Microbiol 54, 605-608.
7. Cowan, S. T. & Steel, K. J. (1965). Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
8. Cui, X. L., Mao, P. H., Zeng, M., Li, W. J., Zhang, L. P., Xu, L. H. & Jiang, C. L. (2001). Streptimonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51, 357-363.
9. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
10. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
11. Gregersen, T. (1978). Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127.
12. Groth, I., Schumann, P., Martin, K., Schuetze, B., Augsten, K., Kramer, I. & Stackebrandt, E. (1999). Ornithinicoccus hortensis gen. nov., sp. nov., a soil actinomycete which contains L-ornithine. Int J Syst Bacteriol 49, 1717-1724.
13. Groth, I., Schumann, P., Weiss, N., Schuetze, B., Augsten, K. & Stackebrandt, E. (2001). Ornithinimicrobium humiphilum gen. nov., sp. nov., a novel soil actinomycete with L-ornithine in the peptidoglycan. Int J Syst Evol Microbiol 51, 81-87.
14. Groth, I., Schumann, P., Schütze, B., Augsten, K. & Stackebrandt, E. (2002). Knoellia sinensis gen. nov., sp. nov. and Knoellia subterranean sp. nov., two novel actinobacteria isolated from a cave. Int J Syst Evol Microbiol 52, 77-84.
15. Hanada, S., Liu, W.-T., Shintani, T., Kamagata, Y. & Nakamura, K. (2002). Tetrasphaera elongata sp. nov., a polyphosphate-accumulating bacterium isolated from activated sludge. Int J Syst Evol Microbiol 52, 883-887.
16. Imamura, Y., Ikeda, M., Yoshida, S. & Kuraishi, H. (2000). Janibacter brevis sp. nov., a new trichloroethylene-degrading bacterium isolated from polluted environments. Int J Syst Evol Microbiol 50, 1899-1903.
17. Jung, S. Y., Kim, H. S., Song, J. J., Lee, S. G., Oh, T. K. & Yoon, J. H. (2006). Kribbia dieselivorans gen. nov., sp. nov., a novel member of the family Intrasporangiaceae. Int J Syst Evol Microbiol 56, 2427-2432.
18. Kageyama, A., Takahashi, Y., Seki, T., Tomoda, H. & Omura, S. (2005). Oryzihumus leptocrescens gen. nov., sp. nov. Int J Syst Evol Microbiol 55, 2555-2559.
19. Kageyama, A., Takahashi, Y. & Omura, S. (2007). Humihabitans oryzae gen. nov., sp. nov. Int J Syst Evol Microbiol 57, 2163-2166.
20. Kalakoutskii, L. V., Kirillova, I. P. & Krasil'nikov, N. A. (1967). A new genus of the Actinomycetales - Intrasporangium gen. nov. J Gen Microbiol 48, 79-85.
21. Kämpfer, P., Terenius, O., Lindh, J. M. & Faye, I. (2006). Janibacter anophelis sp. nov., isolated from the midgut of Anopheles arabiensis. Int J Syst Evol Microbiol 56, 389-392.
22. Kimura, M. (1983). The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press.
23. Kovacs, N. (1956). Identification of Pseudomonas pyocyanea by oxidase reaction. Nature 178, 703.
24. Lee, S. D. (2006). Phycicoccus jejuensis gen. nov., sp. nov., an actinomycete isolated from seaweed. Int J Syst Evol Microbiol 56, 2369-2373.
25. Lee, S. D. & Lee, D. W. (2007). Lapillicoccus jejuensis gen. nov., sp. nov., a novel actinobacterium of the family Intrasporangiaceae, isolated from stone. Int J Syst Evol Microbiol 57, 2794-2798.
26. Lee, J. E., Seo, J. P., Lee, D. W., Ko, Y. H. & Lee, S. D. (2008). Terrabacter lapilli sp. nov., an actinomycete isolated from stone. Int J Syst Evol Microbiol 58, 1084-1088.
27. Martin, K., Schumann, P., Rainey, F. A., Schuetze, B. & Groth, I. (1997). Janibacter limosus gen. nov., sp. nov., a new actinomycete with meso-diaminopimelic acid in the cell wall. Int J Syst Bacteriol 47, 529-534.
28. Maszenan, A. M., Seviour, R. J., Patel, B. K. C., Schumann, P., Burghardt, J., Tokiwa, Y. & Stratton, H. M. (2000). Three isolates of novel polyphosphate-accumulating Gram-positive cocci, obtained from activated sludge, belong to a new genus, Tetrasphaera gen. nov., and description of two new species, Tetrasphaera japonica sp. nov. and Tetrasphaera australiensis sp. nov. Int J Syst Evol Microbiol 50, 593-603.
29. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
30. Minnikin, D. E., Alshamaony, L. & Goodfellow, M. (1975). Differentiation of Mycobacterium, Nocardia, and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88, 200-204.
31. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
32. Montero-Barrientos, M., Rivas, R., Velázquez, E., Monte, E. & Roig, M. G. (2005). Terrabacter terrae sp. nov., a novel actinomycete isolated from soil in Spain. Int J Syst Evol Microbiol 55, 2491-2495.
33. Prauser, H., Schumann, P., Rainey, F. A., Kroppenstedt, R. M. & Stackebrandt, E. (1997). Terracoccus luteus gen. nov., sp. nov., an LL-diaminopimelic acid-containing coccoid actinomycete from soil. Int J Syst Bacteriol 47, 1218-1224.
34. Pridham, T. G. & Gottlieb, D. (1948). The utilization of carbon compounds by some actinomycetales as an aid for species determination. J Bacteriol 56, 107-114.
35. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
36. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
37. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
38. Schumann, P., Prauser, H., Rainey, F. A., Stackebrandt, E. & Hirsch, P. (1997). Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone. Int J Syst Bacteriol 47, 278-283.
39. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
40. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
41. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
42. Weon, H. Y., Kim, B. Y., Schumann, P., Kroppenstedt, R. M., Noh, H. J., Park, C. W. & Kwon, S. W. (2007). Knoellia aerolata sp. nov., isolated from an air sample in Korea. Int J Syst Evol Microbiol 57, 2861-2864.
43. Yi, H., Schumann, P., Sohn, K. & Chun, J. (2004). Serinicoccus marinus gen. nov., sp. nov., a novel actinomycete with L-ornithine and L-serine in the peptidoglycan. Int J Syst Evol Microbiol 54, 1585-1589.
44. Yoon, J. H., Lee, K. C., Kang, S. S., Kho, Y. H., Kang, K. H. & Park, Y. H. (2000). Janibacter terrae sp. nov., a bacterium isolated from soil around a wastewater treatment plant. Int J Syst Evol Microbiol 50, 1821-1827.
45. Yoon, J. H., Lee, H. B., Yeo, S. H. & Choi, J. E. (2004). Janibacter melonis sp. nov., isolated from abnormally spoiled oriental melon in Korea. Int J Syst Evol Microbiol 54, 1975-1980.
46. Yoon, J. H., Lee, S. Y., Kang, S. J. & Oh, T. K. (2008). Phycicoccus dokdonensis sp. nov., isolated from soil. Int J Syst Evol Microbiol 58, 597-600.