Lapillicoccus jejuensis gen. nov., sp. nov., a novel actinobacterium of the family Intrasporangiaceae, isolated from stone

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 12, 2007, Pages 2794-2798

  Lee, Soon Dong ^a   Lee, Dong Wan ^a  

^a Jeju National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; CARDIOLIPIN; DIAMINOPIMELIC ACID; DNA C; DNA PRIMASE; MONOUNSATURATED FATTY ACID; RNA 16S; SATURATED FATTY ACID; SODIUM CHLORIDE;

ACTINOBACTERIA; ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; GENE SEQUENCE; LAPILLICOCCUS JEJUENSIS; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SALT TOLERANCE; SEQUENCE ANALYSIS; SOUTH KOREA; SPECIES COMPARISON; SPECIES DIFFERENCE; SPECIES IDENTIFICATION;

ACTINOMYCETALES; AEROBIOSIS; BASE COMPOSITION; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; GEOLOGIC SEDIMENTS; HYDROGEN-ION CONCENTRATION; KOREA; LOCOMOTION; MOLECULAR SEQUENCE DATA; PEPTIDOGLYCAN; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SODIUM CHLORIDE; TEMPERATURE; VITAMIN K 2;

INTRASPORANGIACEAE; INTRASPORANGIUM; JANIBACTER; KNOELLIA; ORYZIHUMUS; POSIBACTERIA; TERRABACTER; TERRACOCCUS; TETRASPHAERA;

EID: 37549069759     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64911-0     Document Type: Article

References (29)

1. Collins, M. D., Dorsch, M. & Stackebrandt, E. (1989). Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov. Int J Syst Bacteriol 39, 1-6.
2. Collins, M. D., Routh, J., Saraswathy, A., Lawson, P. A., Schumann, P., Welinder-Olsson, C. & Falsen, E. (2004). Arsenicicoccus bolidensis gen. nov., sp. nov., a novel actinomycete isolated from contaminated lake sediment. Int J Syst Evol Microbiol 54, 605-608.
3. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Fitch, W. M. (1971). Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
6. Groth, I., Schumann, P., Weiss, N., Schuetze, B., Augsten, K. & Stackebrandt, E. (2001). Ornithinimicrobium humiphilum gen. nov., sp. nov., a novel soil actinomycete with L-ornithine in the peptidoglycan. Int J Syst Evol Microbiol 51, 81-87.
7. Groth, I., Schumann, P., Schütze, B., Augsten, K. & Stackebrandt, E. (2002). Knoellia sinensis gen. nov., sp. nov. and Knoellia subterranea sp. nov., two novel actinobacteria isolated from a cave. Int J Syst Evol Microbiol 52, 77-84.
8. Hanada, S., Liu, W.-T., Shintani, T., Kamagata, Y. & Nakamura, K. (2002). Tetrasphaera elongata sp. nov., a polyphosphate-accumulating bacterium isolated from activated sludge. Int J Syst Evol Microbiol 52, 883-887.
9. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
10. Jung, S.-Y., Kim, H.-S., Song, J.-J., Lee, S.-G., Oh, T.-K. & Yoon, J.-H. (2006). Kribbia dieselivorans gen. nov., sp. nov., a novel member of the family Intrasporangiaceae. Int J Syst Evol Microbiol 56, 2427-2432.
11. Kageyama, A., Takahashi, Y., Saki, T., Tomoda, H. & Ömura, S. (2005). Oryzihumus leptocrescens gen. nov., sp. nov. Int J Syst Evol Microbiol 55, 2555-2559.
12. Kalakoutskii, L. V., Kirillova, I. P. & Krassilnikov, N. A. (1967). A new genus of the Actinomycetales-Intrasporangium gen. nov. J Gen Microbiol 48, 79-85.
13. Kimpfer, P., Terenius, O., Lindh, J. M. & Faye, I. (2006). Janibacter anophelis sp. nov., isolated from the midgut of Anopheles arabiensis. Int J Syst Evol Microbiol 56, 389-392.
14. Kuester, E. & Williams, S. T. (1964). Selection of media for isolation of streptomycetes. Nature 202, 928-929.
15. Lee, S. D. (2006). Phycicoccus jejuensis gen. nov., sp. nov., an actinomycete isolated from seaweed. Int J Syst Evol Microbiol 56, 2369-2373.
16. Lee, S. D. & Jeong, H. S. (2006). Actinomadura hallensis sp. nov., a novel actinomycete isolated from Mt. Halla in Korea. Int J Syst Evol Microbiol 56, 259-264.
17. Martin, K, Schumann, P., Rainey, F. A., Schuetze, B. & Groth, I. (1997). Janibacter limosus gen. nov., sp. nov., a new actinomycete with meso-diaminopimelic acid in the cell wall. Int J Syst Bacteriol 47, 529-534.
18. Maszenan, A. M., Saviour, R. J., Patel, B. K. C., Schumann, P., Burghardt, J., Tokiwa, Y. & Stratton, H. M. (2000). Three isolates of novel polyphosphate-accumulating Gram-positive cocci, obtained from activated sludge, belong to a new genus, Tetrasphaera gen. nov., and description of two species, Tetrasphaera japonica sp. nov. and Tetrasphaera australiensis sp. nov. Int J Syst Evol Microbiol 50, 593-603.
19. McKenzie, C. M., Seviour, E. M., Schumann, P., Maszenan, A. M., Liu, J.-R., Webb, R. I., Monis, P., Saint, C. P., Steiner, U. & Saviour, R. J. (2006). Isolates of 'Candidatus Nostocoida limicola' Blackall et al. 2000 should be described as three novel species of the genus Tetrasphaera, as Tetrasphaera jenkinsii sp. nov., Tetrasphaera vanveenii sp. nov. and Tetrasphaera veronensis sp. nov. Int J Syst Evol Microbiol 56, 2279-2290.
20. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
21. Montero-Barrientos, M., Rivas, R., Velázquez, E., Monte, E. & Roig, M. G. (2005). Terrabacter terrae sp. nov., a novel actinomycete isolated from soil in Spain. Int J Syst Evol Microbiol 55, 2491-2495.
22. Prauser, H., Schumann, P., Rainey, F. A., Kroppenstedt, R. M. & Stackebrandt, E. (1997). Terracoccus luteus gen. nov., sp. nov., an LL-diaminopimelic acid-containing coccoid actinomycete from soil. Int J Syst Bacteriol 47, 1218-1224.
23. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
24. Schumann, P., Prauser, H., Rainey, F. A., Stackebrandt, E. & Hirsch, P. (1997). Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone. Int J Syst Bacteriol 47, 278-283.
25. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
26. Stackebrandt, E. & Schumann, P. (2000). Description of Bogoriellaceae fam. nov., Dermacoccaceae fam. nov., Rarobacteraceae fam. nov. and Sanguibacteraceae fam. nov. and emendation of some families of the suborder Micrococcineae. Int J Syst Evol Microbiol 50, 1279-1285.
27. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. (1997). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479-491.
28. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
29. Yoon, J.-H., Lee, H. B., Yeo, S.-H. & Choi, J.-E. (2004). Janibacter melonis sp. nov., isolated from abnormally spoiled oriental melon in Korea. Int J Syst Evol Microbiol 54, 1975-1980.