-
1
-
-
0036640350
-
Origin and fate of repeats in bacteria
-
Achaz, G., E. P. Rocha, P. Netter, and E. Coissac. 2002. Origin and fate of repeats in bacteria. Nucleic Acids Res. 30:2987-2994.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 2987-2994
-
-
Achaz, G.1
Rocha, E.P.2
Netter, P.3
Coissac, E.4
-
2
-
-
0032907038
-
Recombination and clonal groupings within Helicobacter pylori from different geographical regions
-
Achtman, M., T. Azuma, D. E. Berg, Y. Ito, G. Morelli, Z. J. Pan, S. Suerbaum, S. A. Thompson, A. van der Ende, and L. J. van Doorn. 1999. Recombination and clonal groupings within Helicobacter pylori from different geographical regions. Mol. Microbiol. 32:459-470.
-
(1999)
Mol. Microbiol.
, vol.32
, pp. 459-470
-
-
Achtman, M.1
Azuma, T.2
Berg, D.E.3
Ito, Y.4
Morelli, G.5
Pan, Z.J.6
Suerbaum, S.7
Thompson, S.A.8
Van Der Ende, A.9
Van Doorn, L.J.10
-
3
-
-
19944405112
-
Diversify or die: Generation of diversity in response to stress
-
Aertsen, A., and C. W. Michiels. 2005. Diversify or die: generation of diversity in response to stress. Crit. Rev. Microbiol. 31:69-78.
-
(2005)
Crit. Rev. Microbiol.
, vol.31
, pp. 69-78
-
-
Aertsen, A.1
Michiels, C.W.2
-
4
-
-
0027068228
-
PCR-based RFLP analysis of DNA sequence diversity in the gastric pathogen Helicobacter pylori
-
Akopyanz, N., N. O. Bukanov, T. U. Westblom, and D. E. Berg. 1992. PCR-based RFLP analysis of DNA sequence diversity in the gastric pathogen Helicobacter pylori. Nucleic Acids Res. 20:6221-6225. (Pubitemid 23039149)
-
(1992)
Nucleic Acids Research
, vol.20
, Issue.23
, pp. 6221-6225
-
-
Akopyanz, N.1
Bukanov, N.O.2
Westblom, T.U.3
Berg, D.E.4
-
5
-
-
0026675742
-
DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting
-
Akopyanz, N., N. O. Bukanov, T. U. Westblom, S. Kresovich, and D. E. Berg. 1992. DNA diversity among clinical isolates of Helicobacter pylori detected by PCR-based RAPD fingerprinting. Nucleic Acids Res. 20:5137-5142.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5137-5142
-
-
Akopyanz, N.1
Bukanov, N.O.2
Westblom, T.U.3
Kresovich, S.4
Berg, D.E.5
-
6
-
-
0033552961
-
Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
-
Alm, R. A., L. S. Ling, D. T. Moir, B. L. King, E. D. Brown, P. C. Doig, D. R. Smith, B. Noonan, B. C. Guild, B. L. deJonge, G. Carmel, P. J. Tummino, A. Caruso, M. Uria-Nickelsen, D. M. Mills, C. Ives, R. Gibson, D. Merberg, S. D. Mills, Q. Jiang, D. E. Taylor, G. F. Vovis, and T. J. Trust. 1999. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397:176-180.
-
(1999)
Nature
, vol.397
, pp. 176-180
-
-
Alm, R.A.1
Ling, L.S.2
Moir, D.T.3
King, B.L.4
Brown, E.D.5
Doig, P.C.6
Smith, D.R.7
Noonan, B.8
Guild, B.C.9
DeJonge, B.L.10
Carmel, G.11
Tummino, P.J.12
Caruso, A.13
Uria-Nickelsen, M.14
Mills, D.M.15
Ives, C.16
Gibson, R.17
Merberg, D.18
Mills, S.D.19
Jiang, Q.20
Taylor, D.E.21
Vovis, G.F.22
Trust, T.J.23
more..
-
7
-
-
0033380294
-
Analysis of the genetic diversity of Helicobacter pylori: The tale of two genomes
-
Alm, R. A., and T. J. Trust. 1999. Analysis of the genetic diversity of Helicobacter pylori: the tale of two genomes. J. Mol. Med. 77:834-846.
-
(1999)
J. Mol. Med.
, vol.77
, pp. 834-846
-
-
Alm, R.A.1
Trust, T.J.2
-
8
-
-
0035816218
-
Domain combinations in archaeal, eubacterial and eukaryotic proteomes
-
Apic, G., J. Gough, and S. A. Teichmann. 2001. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J. Mol. Biol. 310:311-325.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 311-325
-
-
Apic, G.1
Gough, J.2
Teichmann, S.A.3
-
9
-
-
0242526249
-
Plasticity of repetitive DNA sequences within a bacterial (type IV) secretion system component
-
Aras, R. A., W. Fischer, G. I. Perez-Perez, M. Crosatti, T. Ando, R. Haas, and M. J. Blaser. 2003. Plasticity of repetitive DNA sequences within a bacterial (type IV) secretion system component. J. Exp. Med. 198:1349-1360.
-
(2003)
J. Exp. Med.
, vol.198
, pp. 1349-1360
-
-
Aras, R.A.1
Fischer, W.2
Perez-Perez, G.I.3
Crosatti, M.4
Ando, T.5
Haas, R.6
Blaser, M.J.7
-
10
-
-
0345686682
-
Extensive repetitive DNA facilitates prokaryotic genome plasticity
-
Aras, R. A., J. Kang, A. I. Tschumi, Y. Harasaki, and M. J. Blaser. 2003. Extensive repetitive DNA facilitates prokaryotic genome plasticity. Proc. Natl. Acad. Sci. USA 100:13579-13584.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13579-13584
-
-
Aras, R.A.1
Kang, J.2
Tschumi, A.I.3
Harasaki, Y.4
Blaser, M.J.5
-
11
-
-
58149483353
-
The complete genome sequence of Helicobacter pylori strain G27
-
Baltrus, D. A., M. R. Amieva, A. Covacci, T. M. Lowe, D. S. Merrell, K. M. Ottemann, M. Stein, N. R. Salama, and K. Guillemin. 2009. The complete genome sequence of Helicobacter pylori strain G27. J. Bacteriol. 191:447-448.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 447-448
-
-
Baltrus, D.A.1
Amieva, M.R.2
Covacci, A.3
Lowe, T.M.4
Merrell, D.S.5
Ottemann, K.M.6
Stein, M.7
Salama, N.R.8
Guillemin, K.9
-
12
-
-
33644875299
-
GenBank
-
Benson, D. A., I. Karsch-Mizrachi, D. J. Lipman, J. Ostell, and D. L. Wheeler. 2006. GenBank. Nucleic Acids Res. 34:D16-D20.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
13
-
-
33744939499
-
Mechanisms of tandem repeat instability in bacteria
-
Bichara, M., J. Wagner, and I. B. Lambert. 2006. Mechanisms of tandem repeat instability in bacteria. Mutat. Res. 598:144-163.
-
(2006)
Mutat. Res.
, vol.598
, pp. 144-163
-
-
Bichara, M.1
Wagner, J.2
Lambert, I.B.3
-
14
-
-
0035807822
-
Mutation frequency and biological cost of antibiotic resistance in Helicobacter pylori
-
Bjorkholm, B., M. Sjolund, P. G. Falk, O. G. Berg, L. Engstrand, and D. I. Andersson. 2001. Mutation frequency and biological cost of antibiotic resistance in Helicobacter pylori. Proc. Natl. Acad. Sci. USA 98:14607-14612.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 14607-14612
-
-
Bjorkholm, B.1
Sjolund, M.2
Falk, P.G.3
Berg, O.G.4
Engstrand, L.5
Andersson, D.I.6
-
15
-
-
0032906393
-
Host response and vaccine development to Helicobacter pylori infection
-
Blanchard, T. G., S. J. Czinn, and J. G. Nedrud. 1999. Host response and vaccine development to Helicobacter pylori infection. Curr. Top. Microbiol. Immunol. 241:181-213.
-
(1999)
Curr. Top. Microbiol. Immunol.
, vol.241
, pp. 181-213
-
-
Blanchard, T.G.1
Czinn, S.J.2
Nedrud, J.G.3
-
16
-
-
0035252931
-
Coiled coils: A highly versatile protein folding motif
-
DOI 10.1016/S0962-8924(00)01898-5, PII S0962892400018985
-
Burkhard, P., J. Stetefeld, and S. V. Strelkov. 2001. Coiled coils: a highly versatile protein folding motif. Trends Cell Biol. 11:82-88. (Pubitemid 32144755)
-
(2001)
Trends in Cell Biology
, vol.11
, Issue.2
, pp. 82-88
-
-
Burkhard, P.1
Stetefeld, J.2
Strelkov, S.V.3
-
17
-
-
0028307745
-
Frequency of deletion formation decreases exponentially with distance between short direct repeats
-
Chedin, F., E. Dervyn, R. Dervyn, S. D. Ehrlich, and P. Noirot. 1994. Frequency of deletion formation decreases exponentially with distance between short direct repeats. Mol. Microbiol. 12:561-569.
-
(1994)
Mol. Microbiol.
, vol.12
, pp. 561-569
-
-
Chedin, F.1
Dervyn, E.2
Dervyn, R.3
Ehrlich, S.D.4
Noirot, P.5
-
18
-
-
40849099948
-
The highly repetitive region of the Helicobacter pylori CagY protein comprises tandem arrays of an alpha-helical repeat module
-
Delahay, R. M., G. D. Balkwill, K. A. Bunting, W. Edwards, J. C. Atherton, and M. S. Searle. 2008. The highly repetitive region of the Helicobacter pylori CagY protein comprises tandem arrays of an alpha-helical repeat module. J. Mol. Biol. 377:956-971.
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 956-971
-
-
Delahay, R.M.1
Balkwill, G.D.2
Bunting, K.A.3
Edwards, W.4
Atherton, J.C.5
Searle, M.S.6
-
19
-
-
0036134955
-
Identification of target genes regulated by the two-component system HP166-HP165 of helicobacter pylori
-
DOI 10.1128/JB.184.2.350-362.2002
-
Dietz, P., G. Gerlach, and D. Beier. 2002. Identification of target genes regulated by the two-component system HP166-HP165 of Helicobacter pylori. J. Bacteriol. 184:350-362. (Pubitemid 34027374)
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.2
, pp. 350-362
-
-
Dietz, P.1
Gerlach, G.2
Beier, D.3
-
20
-
-
0030927818
-
Helicobacter pylori infection and chronic gastric acid hyposecretion
-
DOI 10.1016/S0016-5085(97)70075-1
-
El-Omar, E. M., K. Oien, A. El-Nujumi, D. Gillen, A. Wirz, S. Dahill, C. Williams, J. E. Ardill, and K. E. McColl. 1997. Helicobacter pylori infection and chronic gastric acid hyposecretion. Gastroenterology 113:15-24. (Pubitemid 27281753)
-
(1997)
Gastroenterology
, vol.113
, Issue.1
, pp. 15-24
-
-
El-Omar, E.M.1
Oien, K.2
El-Nujumi, A.3
Gillen, D.4
Wirz, A.5
Dahill, S.6
Williams, C.7
Ardill, J.E.S.8
McColl, K.E.L.9
-
21
-
-
0000461280
-
Confidence-limits on phylogenies - An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence-limits on phylogenies - an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
22
-
-
33644876020
-
Pfam: Clans, web tools and services
-
Finn, R. D., J. Mistry, B. Schuster-Bockler, S. Griffiths-Jones, V. Hollich, T. Lassmann, S. Moxon, M. Marshall, A. Khanna, R. Durbin, S. R. Eddy, E. L. Sonnhammer, and A. Bateman. 2006. Pfam: clans, web tools and services. Nucleic Acids Res. 34:D247-D251.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Bockler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.12
Bateman, A.13
-
23
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force, A., M. Lynch, F. B. Pickett, A. Amores, Y. L. Yan, and J. Postlethwait. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545. (Pubitemid 29177561)
-
(1999)
Genetics
, vol.151
, Issue.4
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.-L.5
Postlethwait, J.6
-
24
-
-
38349146520
-
The association of gastric leptin with oesophageal inflammation and metaplasia
-
Francois, F., J. Roper, A. J. Goodman, Z. Pei, M. Ghumman, M. Mourad, A. Z. de Perez, G. I. Perez-Perez, C. H. Tseng, and M. J. Blaser. 2008. The association of gastric leptin with oesophageal inflammation and metaplasia. Gut 57:16-24.
-
(2008)
Gut
, vol.57
, pp. 16-24
-
-
Francois, F.1
Roper, J.2
Goodman, A.J.3
Pei, Z.4
Ghumman, M.5
Mourad, M.6
De Perez, A.Z.7
Perez-Perez, G.I.8
Tseng, C.H.9
Blaser, M.J.10
-
25
-
-
0029935007
-
Population genetic analysis of Helicobacter pylori by multilocus enzyme electrophoresis: Extensive allelic diversity and recombinational population structure
-
Go, M. F., V. Kapur, D. Y. Graham, and J. M. Musser. 1996. Population genetic analysis of Helicobacter pylori by multilocus enzyme electrophoresis: extensive allelic diversity and recombinational population structure. J. Bacteriol. 178:3934-3938.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3934-3938
-
-
Go, M.F.1
Kapur, V.2
Graham, D.Y.3
Musser, J.M.4
-
26
-
-
0032584209
-
Epithelial attachment alters the outcome of Helicobacter pylori infection
-
Guruge, J. L., P. G. Falk, R. G. Lorenz, M. Dans, H. P. Wirth, M. J. Blaser, D. E. Berg, and J. I. Gordon. 1998. Epithelial attachment alters the outcome of Helicobacter pylori infection. Proc. Natl. Acad. Sci. USA 95:3925-3930.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3925-3930
-
-
Guruge, J.L.1
Falk, P.G.2
Lorenz, R.G.3
Dans, M.4
Wirth, H.P.5
Blaser, M.J.6
Berg, D.E.7
Gordon, J.I.8
-
27
-
-
0035807814
-
Helicobacter pylori genetic diversity within the gastric niche of a single human host
-
Israel, D. A., N. Salama, U. Krishna, U. M. Rieger, J. C. Atherton, S. Falkow, and R. M. Peek, Jr. 2001. Helicobacter pylori genetic diversity within the gastric niche of a single human host. Proc. Natl. Acad. Sci. USA 98:14625-14630.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 14625-14630
-
-
Israel, D.A.1
Salama, N.2
Krishna, U.3
Rieger, U.M.4
Atherton, J.C.5
Falkow, S.6
Peek Jr., R.M.7
-
28
-
-
33750107653
-
Bacterial populations as perfect gases: Genomic integrity and diversification tensions in Helicobacter pylori
-
Kang, J., and M. J. Blaser. 2006. Bacterial populations as perfect gases: genomic integrity and diversification tensions in Helicobacter pylori. Nat. Rev. Microbiol. 4:826-836.
-
(2006)
Nat. Rev. Microbiol.
, vol.4
, pp. 826-836
-
-
Kang, J.1
Blaser, M.J.2
-
29
-
-
44949256406
-
Repair and antirepair DNA helicases in Helicobacter pylori
-
Kang, J., and M. J. Blaser. 2008. Repair and antirepair DNA helicases in Helicobacter pylori. J. Bacteriol. 190:4218-4224.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 4218-4224
-
-
Kang, J.1
Blaser, M.J.2
-
30
-
-
7744228869
-
Effect of host species on RecG phenotypes in Helicobacter pylori and Escherichia coli
-
DOI 10.1128/JB.186.22.7704-7713.2004
-
Kang, J., D. Tavakoli, A. Tschumi, R. A. Aras, and M. J. Blaser. 2004. Effect of host species on recG phenotypes in Helicobacter pylori and Escherichia coli. J. Bacteriol. 186:7704-7713. (Pubitemid 39463737)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.22
, pp. 7704-7713
-
-
Kang, J.1
Tavakoli, D.2
Tschumi, A.3
Aras, R.A.4
Blaser, M.J.5
-
31
-
-
0041718387
-
Birth and death of protein domains: A simple model of evolution explains power law behavior
-
Karev, G. P., Y. I. Wolf, A. Y. Rzhetsky, F. S. Berezovskaya, and E. V. Koonin. 2002. Birth and death of protein domains: a simple model of evolution explains power law behavior. BMC Evol. Biol. 2:18.
-
(2002)
BMC Evol. Biol.
, vol.2
, pp. 18
-
-
Karev, G.P.1
Wolf, Y.I.2
Rzhetsky, A.Y.3
Berezovskaya, F.S.4
Koonin, E.V.5
-
32
-
-
0032944936
-
Emergence of recombinant strains of Helicobacter pylori during human infection
-
Kersulyte, D., H. Chalkauskas, and D. E. Berg. 1999. Emergence of recombinant strains of Helicobacter pylori during human infection. Mol. Microbiol. 31:31-43.
-
(1999)
Mol. Microbiol.
, vol.31
, pp. 31-43
-
-
Kersulyte, D.1
Chalkauskas, H.2
Berg, D.E.3
-
33
-
-
0033945491
-
Tandem clusters of membrane proteins in complete genome sequences
-
DOI 10.1101/gr.10.6.731
-
Kihara, D., and M. Kanehisa. 2000. Tandem clusters of membrane proteins in complete genome sequences. Genome Res. 10:731-743. (Pubitemid 30433349)
-
(2000)
Genome Research
, vol.10
, Issue.6
, pp. 731-743
-
-
Kihara, D.1
Kanehisa, M.2
-
34
-
-
1842535542
-
Genes of Helicobacter pylori regulated by attachment to AGS cells
-
Kim, N., E. A. Marcus, Y. Wen, D. L. Weeks, D. R. Scott, H. C. Jung, I. S. Song, and G. Sachs. 2004. Genes of Helicobacter pylori regulated by attachment to AGS cells. Infect. Immun. 72:2358-2368.
-
(2004)
Infect. Immun.
, vol.72
, pp. 2358-2368
-
-
Kim, N.1
Marcus, E.A.2
Wen, Y.3
Weeks, D.L.4
Scott, D.R.5
Jung, H.C.6
Song, I.S.7
Sachs, G.8
-
35
-
-
33644629879
-
Role of selection in fixation of gene duplications
-
Kondrashov, F. A., and A. S. Kondrashov. 2006. Role of selection in fixation of gene duplications. J. Theor. Biol. 239:141-151.
-
(2006)
J. Theor. Biol.
, vol.239
, pp. 141-151
-
-
Kondrashov, F.A.1
Kondrashov, A.S.2
-
36
-
-
0033983312
-
Quasispecies development of Helicobacter pylori observed in paired isolates obtained years apart from the same host
-
Kuipers, E. J., D. A. Israel, J. G. Kusters, M. M. Gerrits, J. Weel, A. van Der Ende, R. W. van Der Hulst, H. P. Wirth, J. Hook-Nikanne, S. A. Thompson, and M. J. Blaser. 2000. Quasispecies development of Helicobacter pylori observed in paired isolates obtained years apart from the same host. J. Infect. Dis. 181:273-282.
-
(2000)
J. Infect. Dis.
, vol.181
, pp. 273-282
-
-
Kuipers, E.J.1
Israel, D.A.2
Kusters, J.G.3
Gerrits, M.M.4
Weel, J.5
Van Der Ende, A.6
Van Der Hulst, R.W.7
Wirth, H.P.8
Hook-Nikanne, J.9
Thompson, S.A.10
Blaser, M.J.11
-
37
-
-
57049164377
-
Mosaic DNA imports with interspersions of recipient sequence after natural transformation of Helicobacter pylori
-
DOI 10.1371/journal.pone.0003797
-
Kulick, S., C. Moccia, X. Didelot, D. Falush, C. Kraft, and S. Suerbaum. 2008. Mosaic DNA imports with interspersions of recipient sequence after natural transformation of Helicobacter pylori. PLoS ONE 3:e3797. (Pubitemid 352761156)
-
(2008)
PLoS ONE
, vol.3
, Issue.11
-
-
Kulick, S.1
Moccia, C.2
Didelot, X.3
Falush, D.4
Kraft, C.5
Suerbaum, S.6
-
38
-
-
3242810318
-
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
-
Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief. Bioinform. 5:150-163.
-
(2004)
Brief. Bioinform.
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
39
-
-
0035890910
-
REPuter: The manifold applications of repeat analysis on a genomic scale
-
Kurtz, S., J. V. Choudhuri, E. Ohlebusch, C. Schleiermacher, J. Stoye, and R. Giegerich. 2001. REPuter: the manifold applications of repeat analysis on a genomic scale. Nucleic Acids Res. 29:4633-4642. (Pubitemid 33095024)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.22
, pp. 4633-4642
-
-
Kurtz, S.1
Choudhuri, J.V.2
Ohlebusch, E.3
Schleiermacher, C.4
Stoye, J.5
Giegerich, R.6
-
40
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin, M. A., G. Blackshields, N. P. Brown, R. Chenna, P. A. McGettigan, H. McWilliam, F. Valentin, I. M. Wallace, A. Wilm, R. Lopez, J. D. Thompson, T. J. Gibson, and D. G. Higgins. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
41
-
-
0023256559
-
Slipped-strand mispairing: A major mechanism for DNA sequence evolution
-
Levinson, G., and G. A. Gutman. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4:203-221.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.A.2
-
42
-
-
0003421005
-
-
Sinauer Associates, Sunderland, MA
-
Li, W.-H. 1997. Molecular evolution. Sinauer Associates, Sunderland, MA.
-
(1997)
Molecular Evolution
-
-
Li, W.-H.1
-
43
-
-
63449095763
-
Natural transformation of Helicobacter pylori involves the integration of short DNA fragments interrupted by gaps of variable size
-
Lin, E. A., X. S. Zhang, S. M. Levine, S. R. Gill, D. Falush, and M. J. Blaser. 2009. Natural transformation of Helicobacter pylori involves the integration of short DNA fragments interrupted by gaps of variable size. PLoS Pathog. 5:e1000337.
-
(2009)
PLoS Pathog.
, vol.5
-
-
Lin, E.A.1
Zhang, X.S.2
Levine, S.M.3
Gill, S.R.4
Falush, D.5
Blaser, M.J.6
-
44
-
-
0033536041
-
Sequence anomalies in the Cag7 gene of the Helicobacter pylori pathogenicity island
-
Liu, G., T. K. McDaniel, S. Falkow, and S. Karlin. 1999. Sequence anomalies in the Cag7 gene of the Helicobacter pylori pathogenicity island. Proc. Natl. Acad. Sci. USA 96:7011-7016.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 7011-7016
-
-
Liu, G.1
McDaniel, T.K.2
Falkow, S.3
Karlin, S.4
-
45
-
-
33646359655
-
Requirement of histidine kinases HP0165 and HP1364 for acid resistance in Helicobacter pylori
-
Loh, J. T., and T. L. Cover. 2006. Requirement of histidine kinases HP0165 and HP1364 for acid resistance in Helicobacter pylori. Infect. Immun. 74:3052-3059.
-
(2006)
Infect. Immun.
, vol.74
, pp. 3052-3059
-
-
Loh, J.T.1
Cover, T.L.2
-
46
-
-
2942630097
-
Encoded errors: Mutations and rearrangements mediated by misalignment at repetitive DNA sequences
-
Lovett, S. T. 2004. Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences. Mol. Microbiol. 52:1243-1253.
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 1243-1253
-
-
Lovett, S.T.1
-
47
-
-
0030271515
-
Coiled coils: New structures and new functions
-
Lupas, A. 1996. Coiled coils: new structures and new functions. Trends Biochem. Sci. 21:375-382.
-
(1996)
Trends Biochem. Sci.
, vol.21
, pp. 375-382
-
-
Lupas, A.1
-
48
-
-
0038781648
-
PH-regulated gene expression of the gastric pathogen Helicobacter pylori
-
Merrell, D. S., M. L. Goodrich, G. Otto, L. S. Tompkins, and S. Falkow. 2003. pH-regulated gene expression of the gastric pathogen Helicobacter pylori. Infect. Immun. 71:3529-3539.
-
(2003)
Infect. Immun.
, vol.71
, pp. 3529-3539
-
-
Merrell, D.S.1
Goodrich, M.L.2
Otto, G.3
Tompkins, L.S.4
Falkow, S.5
-
49
-
-
33845648557
-
Bacterial contingency loci: The role of simple sequence DNA repeats in bacterial adaptation
-
Moxon, R., C. Bayliss, and D. Hood. 2006. Bacterial contingency loci: the role of simple sequence DNA repeats in bacterial adaptation. Annu. Rev. Genet. 40:307-333.
-
(2006)
Annu. Rev. Genet.
, vol.40
, pp. 307-333
-
-
Moxon, R.1
Bayliss, C.2
Hood, D.3
-
50
-
-
33644537635
-
An enzymatic ruler modulates Lewis antigen glycosylation of Helicobacter pylori LPS during persistent infection
-
Nilsson, C., A. Skoglund, A. P. Moran, H. Annuk, L. Engstrand, and S. Normark. 2006. An enzymatic ruler modulates Lewis antigen glycosylation of Helicobacter pylori LPS during persistent infection. Proc. Natl. Acad. Sci. USA 103:2863-2868.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 2863-2868
-
-
Nilsson, C.1
Skoglund, A.2
Moran, A.P.3
Annuk, H.4
Engstrand, L.5
Normark, S.6
-
51
-
-
33745625645
-
The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: Evolution during disease progression
-
Oh, J. D., H. Kling-Backhed, M. Giannakis, J. Xu, R. S. Fulton, L. A. Fulton, H. S. Cordum, C. Wang, G. Elliott, J. Edwards, E. R. Mardis, L. G. Engstrand, and J. I. Gordon. 2006. The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression. Proc. Natl. Acad. Sci. USA 103:9999-10004.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 9999-10004
-
-
Oh, J.D.1
Kling-Backhed, H.2
Giannakis, M.3
Xu, J.4
Fulton, R.S.5
Fulton, L.A.6
Cordum, H.S.7
Wang, C.8
Elliott, G.9
Edwards, J.10
Mardis, E.R.11
Engstrand, L.G.12
Gordon, J.I.13
-
52
-
-
0042324147
-
Two-component systems of Helicobacter pylori contribute to virulence in a mouse infection model
-
Panthel, K., P. Dietz, R. Haas, and D. Beier. 2003. Two-component systems of Helicobacter pylori contribute to virulence in a mouse infection model. Infect. Immun. 71:5381-5385.
-
(2003)
Infect. Immun.
, vol.71
, pp. 5381-5385
-
-
Panthel, K.1
Dietz, P.2
Haas, R.3
Beier, D.4
-
53
-
-
0036370334
-
Helicobacter pylori and gastrointestinal tract adenocarcinomas
-
Peek, R. M., Jr., and M. J. Blaser. 2002. Helicobacter pylori and gastrointestinal tract adenocarcinomas. Nat. Rev. Cancer 2:28-37.
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 28-37
-
-
Peek Jr., R.M.1
Blaser, M.J.2
-
54
-
-
0037843195
-
Transient and persistent Helicobacter pylori colonization in Native American children
-
Pérez-Pérez, G. I., R. B. Sack, R. Reid, M. Santosham, J. Croll, and M. J. Blaser. 2003. Transient and persistent Helicobacter pylori colonization in Native American children. J. Clin. Microbiol. 41:2401-2407.
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 2401-2407
-
-
Pérez-Pérez, G.I.1
Sack, R.B.2
Reid, R.3
Santosham, M.4
Croll, J.5
Blaser, M.J.6
-
55
-
-
33646581347
-
Characterization of the ArsRS regulon of Helicobacter pylori, involved in acid adaptation
-
Pflock, M., N. Finsterer, B. Joseph, H. Mollenkopf, T. F. Meyer, and D. Beier. 2006. Characterization of the ArsRS regulon of Helicobacter pylori, involved in acid adaptation. J. Bacteriol. 188:3449-3462.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 3449-3462
-
-
Pflock, M.1
Finsterer, N.2
Joseph, B.3
Mollenkopf, H.4
Meyer, T.F.5
Beier, D.6
-
56
-
-
11344253285
-
Suppression of homologous and homeologous recombination by the bacterial MutS2 protein
-
Pinto, A. V., A. Mathieu, S. Marsin, X. Veaute, L. Ielpi, A. Labigne, and J. P. Radicella. 2005. Suppression of homologous and homeologous recombination by the bacterial MutS2 protein. Mol. Cell 17:113-120.
-
(2005)
Mol. Cell
, vol.17
, pp. 113-120
-
-
Pinto, A.V.1
Mathieu, A.2
Marsin, S.3
Veaute, X.4
Ielpi, L.5
Labigne, A.6
Radicella, J.P.7
-
57
-
-
0036303443
-
Concerted evolution between duplicated genetic elements in Helicobacter pylori
-
Pride, D. T., and M. J. Blaser. 2002. Concerted evolution between duplicated genetic elements in Helicobacter pylori. J. Mol. Biol. 316:629-642.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 629-642
-
-
Pride, D.T.1
Blaser, M.J.2
-
58
-
-
0035140053
-
Allelic variation within Helicobacter pylori babA and babB
-
Pride, D. T., R. J. Meinersmann, and M. J. Blaser. 2001. Allelic variation within Helicobacter pylori babA and babB. Infect. Immun. 69:1160-1171.
-
(2001)
Infect. Immun.
, vol.69
, pp. 1160-1171
-
-
Pride, D.T.1
Meinersmann, R.J.2
Blaser, M.J.3
-
59
-
-
0032843459
-
Analysis of long repeats in bacterial genomes reveals alternative evolutionary mechanisms in Bacillus subtilis and other competent prokaryotes
-
Rocha, E. P., A. Danchin, and A. Viari. 1999. Analysis of long repeats in bacterial genomes reveals alternative evolutionary mechanisms in Bacillus subtilis and other competent prokaryotes. Mol. Biol. Evol. 16:1219-1230.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1219-1230
-
-
Rocha, E.P.1
Danchin, A.2
Viari, A.3
-
60
-
-
0033397546
-
Functional and evolutionary roles of long repeats in prokaryotes
-
Rocha, E. P., A. Danchin, and A. Viari. 1999. Functional and evolutionary roles of long repeats in prokaryotes. Res. Microbiol. 150:725-733.
-
(1999)
Res. Microbiol.
, vol.150
, pp. 725-733
-
-
Rocha, E.P.1
Danchin, A.2
Viari, A.3
-
61
-
-
0038046757
-
A novel sheathed surface organelle of the Helicobacter pylori cag type IV secretion system
-
Rohde, M., J. Puls, R. Buhrdorf, W. Fischer, and R. Haas. 2003. A novel sheathed surface organelle of the Helicobacter pylori cag type IV secretion system. Mol. Microbiol. 49:219-234.
-
(2003)
Mol. Microbiol.
, vol.49
, pp. 219-234
-
-
Rohde, M.1
Puls, J.2
Buhrdorf, R.3
Fischer, W.4
Haas, R.5
-
62
-
-
0343819839
-
Repeated sequences in bacterial chromosomes and plasmids: A glimpse from sequenced genomes
-
Romero, D., J. Martinez-Salazar, E. Ortiz, C. Rodriguez, and E. Valencia- Morales. 1999. Repeated sequences in bacterial chromosomes and plasmids: a glimpse from sequenced genomes. Res. Microbiol. 150:735-743.
-
(1999)
Res. Microbiol.
, vol.150
, pp. 735-743
-
-
Romero, D.1
Martinez-Salazar, J.2
Ortiz, E.3
Rodriguez, C.4
Valencia-Morales, E.5
-
63
-
-
0036842765
-
Responses of endoscopy patients in Ladakh, India, to Helicobacter pylori whole-cell and Cag A antigens
-
Romero-Gallo, J., G. I. Perez-Perez, R. P. Novick, P. Kamath, T. Norbu, and M. J. Blaser. 2002. Responses of endoscopy patients in Ladakh, India, to Helicobacter pylori whole-cell and Cag A antigens. Clin. Diagn. Lab. Immunol. 9:1313-1317.
-
(2002)
Clin. Diagn. Lab. Immunol.
, vol.9
, pp. 1313-1317
-
-
Romero-Gallo, J.1
Perez-Perez, G.I.2
Novick, R.P.3
Kamath, P.4
Norbu, T.5
Blaser, M.J.6
-
64
-
-
18044373212
-
Identification of two new Helicobacter pylori surface proteins involved in attachment to epithelial cell lines
-
Rubinsztein-Dunlop, S., B. Guy, L. Lissolo, and H. Fischer. 2005. Identification of two new Helicobacter pylori surface proteins involved in attachment to epithelial cell lines. J. Med. Microbiol. 54:427-434.
-
(2005)
J. Med. Microbiol.
, vol.54
, pp. 427-434
-
-
Rubinsztein-Dunlop, S.1
Guy, B.2
Lissolo, L.3
Fischer, H.4
-
65
-
-
34248336147
-
Genetic analysis of Helicobacter pylori strain populations colonizing the stomach at different times postinfection
-
Salama, N. R., G. Gonzalez-Valencia, B. Deatherage, F. Aviles-Jimenez, J. C. Atherton, D. Y. Graham, and J. Torres. 2007. Genetic analysis of Helicobacter pylori strain populations colonizing the stomach at different times postinfection. J. Bacteriol. 189:3834-3845.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 3834-3845
-
-
Salama, N.R.1
Gonzalez-Valencia, G.2
Deatherage, B.3
Aviles-Jimenez, F.4
Atherton, J.C.5
Graham, D.Y.6
Torres, J.7
-
66
-
-
15944412560
-
Gene conversion and concerted evolution in bacterial genomes
-
Santoyo, G., and D. Romero. 2005. Gene conversion and concerted evolution in bacterial genomes. FEMS Microbiol. Rev. 29:169-183.
-
(2005)
FEMS Microbiol. Rev.
, vol.29
, pp. 169-183
-
-
Santoyo, G.1
Romero, D.2
-
67
-
-
0031931361
-
Simple sequence repeats in the Helicobacter pylori genome
-
Saunders, N. J., J. F. Peden, D. W. Hood, and E. R. Moxon. 1998. Simple sequence repeats in the Helicobacter pylori genome. Mol. Microbiol. 27:1091-1098.
-
(1998)
Mol. Microbiol.
, vol.27
, pp. 1091-1098
-
-
Saunders, N.J.1
Peden, J.F.2
Hood, D.W.3
Moxon, E.R.4
-
68
-
-
0024356449
-
Statistical tests for detecting gene conversion
-
Sawyer, S. 1989. Statistical tests for detecting gene conversion. Mol. Biol. Evol. 6:526-538.
-
(1989)
Mol. Biol. Evol.
, vol.6
, pp. 526-538
-
-
Sawyer, S.1
-
70
-
-
0037057683
-
Helicobacter pylori infection
-
Suerbaum, S., and P. Michetti. 2002. Helicobacter pylori infection. N. Engl. J. Med. 347:1175-1186.
-
(2002)
N. Engl. J. Med.
, vol.347
, pp. 1175-1186
-
-
Suerbaum, S.1
Michetti, P.2
-
72
-
-
0030835739
-
The complete genome sequence of the gastric pathogen Helicobacter pylori
-
DOI 10.1038/41483
-
Tomb, J. F., O. White, A. R. Kerlavage, R. A. Clayton, G. G. Sutton, R. D. Fleischmann, K. A. Ketchum, H. P. Klenk, S. Gill, B. A. Dougherty, K. Nelson, J. Quackenbush, L. Zhou, E. F. Kirkness, S. Peterson, B. Loftus, D. Richardson, R. Dodson, H. G. Khalak, A. Glodek, K. McKenney, L. M. Fitzegerald, N. Lee, M. D. Adams, E. K. Hickey, D. E. Berg, J. D. Gocayne, T. R. Utterback, J. D. Peterson, J. M. Kelley, M. D. Cotton, J. M. Weidman, C. Fujii, C. Bowman, L. Watthey, E. Wallin, W. S. Hayes, M. Borodovsky, P. D. Karp, H. O. Smith, C. M. Fraser, and J. C. Venter. 1997. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388:539-547. (Pubitemid 27339996)
-
(1997)
Nature
, vol.388
, Issue.6642
, pp. 539-547
-
-
Tomb, J.-F.1
White, O.2
Kerlavage, A.R.3
Clayton, R.A.4
Sutton, G.G.5
Fleischmann, R.D.6
Ketchum, K.A.7
Klenk, H.P.8
Gill, S.9
Dougherty, B.A.10
Nelson, K.11
Quackenbush, J.12
Zhou, L.13
Kirkness, E.F.14
Peterson, S.15
Loftus, B.16
Richardson, D.17
Dodson, R.18
Khalak, H.G.19
Glodek, A.20
McKenney, K.21
Fitzegerald, L.M.22
Lee, N.23
Adams, M.D.24
Hickey, E.K.25
Berg, D.E.26
Gocayne, J.D.27
Utterback, T.R.28
Peterson, J.D.29
Kelley, J.M.30
Cotton, M.D.31
Weidman, J.M.32
Fujii, C.33
Bowman, C.34
Watthey, L.35
Wallin, E.36
Hayes, W.S.37
Borodovsky, M.38
Karp, P.D.39
Smith, H.O.40
Fraser, C.M.41
Craig Venter, J.42
more..
-
73
-
-
0031838719
-
Shortsequence DNA repeats in prokaryotic genomes
-
van Belkum, A., S. Scherer, L. van Alphen, and H. Verbrugh. 1998. Shortsequence DNA repeats in prokaryotic genomes. Microbiol. Mol. Biol. Rev. 62:275-293.
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 275-293
-
-
Van Belkum, A.1
Scherer, S.2
Van Alphen, L.3
Verbrugh, H.4
-
74
-
-
0029835002
-
Heterogeneous Helicobacter pylori isolates from members of a family with a history of peptic ulcer disease
-
van der Ende, A., E. A. Rauws, M. Feller, C. J. Mulder, G. N. Tytgat, and J. Dankert. 1996. Heterogeneous Helicobacter pylori isolates from members of a family with a history of peptic ulcer disease. Gastroenterology 111:638-647.
-
(1996)
Gastroenterology
, vol.111
, pp. 638-647
-
-
Van Der Ende, A.1
Rauws, E.A.2
Feller, M.3
Mulder, C.J.4
Tytgat, G.N.5
Dankert, J.6
-
75
-
-
12344261833
-
The relationship between domain duplication and recombination
-
Vogel, C., S. A. Teichmann, and J. Pereira-Leal. 2005. The relationship between domain duplication and recombination. J. Mol. Biol. 346:355-365.
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 355-365
-
-
Vogel, C.1
Teichmann, S.A.2
Pereira-Leal, J.3
-
76
-
-
0033391298
-
Mutation as an origin of genetic variability in Helicobacter pylori
-
DOI 10.1016/S0966-842X(99)01632-7, PII S0966842X99016327
-
Wang, G., M. Z. Humayun, and D. E. Taylor. 1999. Mutation as an origin of genetic variability in Helicobacter pylori. Trends Microbiol. 7:488-493. (Pubitemid 30017700)
-
(1999)
Trends in Microbiology
, vol.7
, Issue.12
, pp. 488-493
-
-
Wang, G.1
Taylor, D.E.2
Humayun, M.Z.3
-
77
-
-
0141446074
-
Acid-adaptive genes of Helicobacter pylori
-
Wen, Y., E. A. Marcus, U. Matrubutham, M. A. Gleeson, D. R. Scott, and G. Sachs. 2003. Acid-adaptive genes of Helicobacter pylori. Infect. Immun. 71:5921-5939.
-
(2003)
Infect. Immun.
, vol.71
, pp. 5921-5939
-
-
Wen, Y.1
Marcus, E.A.2
Matrubutham, U.3
Gleeson, M.A.4
Scott, D.R.5
Sachs, G.6
-
78
-
-
0033135261
-
Phenotypic diversity in Lewis expression of Helicobacter pylori isolates from the same host
-
Wirth, H. P., M. Yang, R. M. Peek, Jr., J. Hook-Nikanne, M. Fried, and M. J. Blaser. 1999. Phenotypic diversity in Lewis expression of Helicobacter pylori isolates from the same host. J. Lab Clin. Med. 133:488-500.
-
(1999)
J. Lab Clin. Med.
, vol.133
, pp. 488-500
-
-
Wirth, H.P.1
Yang, M.2
Peek Jr., R.M.3
Hook-Nikanne, J.4
Fried, M.5
Blaser, M.J.6
|