-
1
-
-
14644431741
-
A tetrahydrofolate-dependent O-demethylase, LigM, is crucial for catabolism of vanillate and syringate in Sphingomonas paucimobilis SYK-6
-
Abe, T., E. Masai, K. Miyauchi, Y. Katayama, and M. Fukuda. 2005. A tetrahydrofolate-dependent O-demethylase, LigM, is crucial for catabolism of vanillate and syringate in Sphingomonas paucimobilis SYK-6. J. Bacteriol. 187:2030-2037.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 2030-2037
-
-
Abe, T.1
Masai, E.2
Miyauchi, K.3
Katayama, Y.4
Fukuda, M.5
-
2
-
-
3242813728
-
The homogentisate pathway: A central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida
-
Arias-Barrau, E., E. R. Olivera, J. M. Luengo, C. Fernández, B. Galán, J. L. García, E. Díaz, and B. Miñambres. 2004. The homogentisate pathway: a central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida. J. Bacteriol. 186:5062-5077.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 5062-5077
-
-
Arias-Barrau, E.1
Olivera, E.R.2
Luengo, J.M.3
Fernández, C.4
Galán, B.5
García, J.L.6
Díaz, E.7
Miñambres, B.8
-
3
-
-
0028276797
-
Analysis of three 2,3-dihydroxybiphenyl 1,2-dioxygenases found in Rhodococcus globerulus P6. Identification of a new family of extradiol dioxygenases
-
Asturias, J. A., L. D. Eltis, M. Prucha, and K. N. Timmis. 1994. Analysis of three 2,3-dihydroxybiphenyl 1,2-dioxygenases found in Rhodococcus globerulus P6. Identification of a new family of extradiol dioxygenases. J. Biol. Chem. 269:7807-7815.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 7807-7815
-
-
Asturias, J.A.1
Eltis, L.D.2
Prucha, M.3
Timmis, K.N.4
-
4
-
-
0024806267
-
Nucleotide sequence and expression of the catechol 2,3-dioxygenase- encoding gene of phenol-catabolizing Pseudomonas CF600
-
Bartilson, M., and V. Shingler. 1989. Nucleotide sequence and expression of the catechol 2,3-dioxygenase-encoding gene of phenol-catabolizing Pseudomonas CF600. Gene 85:233-238.
-
(1989)
Gene
, vol.85
, pp. 233-238
-
-
Bartilson, M.1
Shingler, V.2
-
5
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
-
(1976)
Anal. Biochem.
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
6
-
-
13444304367
-
The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis
-
Cole, J. R., B. Chai, R. J. Farris, Q. Wang, S. A. Kulam, D. M. McGarrell, G. M. Garrity, and J. M. Tiedje. 2005. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res. 33:D294-D296.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam, S.A.5
McGarrell, D.M.6
Garrity, G.M.7
Tiedje, J.M.8
-
7
-
-
0016433894
-
Novel pathway for degradation of protocatechuic acid in Bacillus species
-
Crawford, R. L. 1975. Novel pathway for degradation of protocatechuic acid in Bacillus species. J. Bacteriol. 121:531-536.
-
(1975)
J. Bacteriol.
, vol.121
, pp. 531-536
-
-
Crawford, R.L.1
-
8
-
-
0017077975
-
Pathways of 4-hydroxybenzoate degradation among species of Bacillus
-
Crawford, R. L. 1976. Pathways of 4-hydroxybenzoate degradation among species of Bacillus. J. Bacteriol. 127:204-210.
-
(1976)
J. Bacteriol.
, vol.127
, pp. 204-210
-
-
Crawford, R.L.1
-
10
-
-
13544251411
-
Transcriptional organization of genes for protocatechuate and quinate degradation from Acinetobacter sp. strain ADP1
-
Dal, S., G. Trautwein, and U. Gerischer. 2005. Transcriptional organization of genes for protocatechuate and quinate degradation from Acinetobacter sp. strain ADP1. Appl. Environ. Microbiol. 71:1025-1034.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 1025-1034
-
-
Dal, S.1
Trautwein, G.2
Gerischer, U.3
-
11
-
-
0027321256
-
Identification of the transcriptional activator pobR and characterization of its role in the expression of pobA, the structural gene for p-hydroxybenzoate hydroxylase in Acinetobacter calcoaceticus
-
DiMarco, A. A., B. Averhoff, and L. N. Ornston. 1993. Identification of the transcriptional activator pobR and characterization of its role in the expression of pobA, the structural gene for p-hydroxybenzoate hydroxylase in Acinetobacter calcoaceticus. J. Bacteriol. 175:4499-4506.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4499-4506
-
-
DiMarco, A.A.1
Averhoff, B.2
Ornston, L.N.3
-
12
-
-
0035663539
-
Evolution of functional diversity in the cupin superfamily
-
Dunwell, J. M., A. Culham, C. E. Carter, C. R. Sosa-Aguirre, and P. W. Goodenough. 2001. Evolution of functional diversity in the cupin superfamily. Trends Biochem. Sci. 26:740-746.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 740-746
-
-
Dunwell, J.M.1
Culham, A.2
Carter, C.E.3
Sosa-Aguirre, C.R.4
Goodenough, P.W.5
-
13
-
-
0034991776
-
Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B
-
Eaton, R. W. 2001. Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12B. J. Bacteriol. 183:3689-3703.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 3689-3703
-
-
Eaton, R.W.1
-
14
-
-
0029846961
-
Evolutionary relationships among extradiol dioxygenases
-
Eltis, L. D., and J. T. Bolin. 1996. Evolutionary relationships among extradiol dioxygenases. J. Bacteriol. 178:5930-5937.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 5930-5937
-
-
Eltis, L.D.1
Bolin, J.T.2
-
15
-
-
0033543669
-
Switch of coenzyme specificity of p-hydroxybenzoate hydroxylase
-
Eppink, M. H., K. M. Overkamp, H. A. Schreuder, and W. J. Van Berkel. 1999. Switch of coenzyme specificity of p-hydroxybenzoate hydroxylase. J. Mol. Biol. 292:87-96.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 87-96
-
-
Eppink, M.H.1
Overkamp, K.M.2
Schreuder, H.A.3
Van Berkel, W.J.4
-
16
-
-
0032054604
-
Lys42 and Ser42 variants of p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens reveal that Arg42 is essential for NADPH binding
-
Eppink, M. H., H. A. Schreuder, and W. J. van Berkel. 1998. Lys42 and Ser42 variants of p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens reveal that Arg42 is essential for NADPH binding. Eur. J. Biochem. 253:194-201.
-
(1998)
Eur. J. Biochem.
, vol.253
, pp. 194-201
-
-
Eppink, M.H.1
Schreuder, H.A.2
Van Berkel, W.J.3
-
17
-
-
0025370615
-
Construction of broad-host-range plasmid vectors for easy visible selection and analysis of promoters
-
Farinha, M. A., and A. M. Kropinski. 1990. Construction of broad-host-range plasmid vectors for easy visible selection and analysis of promoters. J. Bacteriol. 172:3496-3499. (Pubitemid 20179813)
-
(1990)
Journal of Bacteriology
, vol.172
, Issue.6
, pp. 3496-3499
-
-
Farinha, M.A.1
Kropinski, A.M.2
-
18
-
-
0005536404
-
Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway
-
Franklin, F. C., M. Bagdasarian, M. M. Bagdasarian, and K. N. Timmis. 1981. Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for the entire regulated aromatic ring meta cleavage pathway. Proc. Natl. Acad. Sci. USA 78:7458-7462.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 7458-7462
-
-
Franklin, F.C.1
Bagdasarian, M.2
Bagdasarian, M.M.3
Timmis, K.N.4
-
19
-
-
0037144592
-
Identification and expression of a cDNA encoding human α-amino-β-carboxymuconate-ε-semialdehyde decarboxylase (ACMSD). A key enzyme for the tryptophan-niacine pathway and "quinolinate hypothesis"
-
Fukuoka, S., K. Ishiguro, K. Yanagihara, A. Tanabe, Y. Egashira, H. Sanada, and K. Shibata. 2002. Identification and expression of a cDNA encoding human α-amino-β-carboxymuconate-ε-semialdehyde decarboxylase (ACMSD). A key enzyme for the tryptophan-niacine pathway and "quinolinate hypothesis". J. Biol. Chem. 277:35162-35167.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 35162-35167
-
-
Fukuoka, S.1
Ishiguro, K.2
Yanagihara, K.3
Tanabe, A.4
Egashira, Y.5
Sanada, H.6
Shibata, K.7
-
20
-
-
0031938056
-
PcaU, a transcriptional activator of genes for protocatechuate utilization in Acinetobacter
-
Gerischer, U., A. Segura, and L. N. Ornston. 1998. PcaU, a transcriptional activator of genes for protocatechuate utilization in Acinetobacter. J. Bacteriol. 180:1512-1524.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 1512-1524
-
-
Gerischer, U.1
Segura, A.2
Ornston, L.N.3
-
21
-
-
0020959710
-
Studies on transformation of Escherichia coli with plasmids
-
Hanahan, D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166:557-580.
-
(1983)
J. Mol. Biol.
, vol.166
, pp. 557-580
-
-
Hanahan, D.1
-
22
-
-
0034459639
-
The 4-oxalomesaconate hydratase gene, involved in the protocatechuate 4,5-cleavage pathway, is essential to vanillate and syringate degradation in Sphingomonas paucimobilis SYK-6
-
DOI 10.1128/JB.182.24.6950-6957.2000
-
Hara, H., E. Masai, Y. Katayama, and M. Fukuda. 2000. The 4-oxalomesaconate hydratase gene, involved in the protocatechuate 4,5-cleavage pathway, is essential to vanillate and syringate degradation in Sphingomonas paucimobilis SYK-6. J. Bacteriol. 182:6950-6957. (Pubitemid 32259598)
-
(2000)
Journal of Bacteriology
, vol.182
, Issue.24
, pp. 6950-6957
-
-
Hara, H.1
Masai, E.2
Katayama, Y.3
Fukuda, M.4
-
23
-
-
0021124798
-
Transposon mutagenesis analysis of meta-cleavage pathway operon genes of the TOL plasmid of Pseudomonas putida mt-2
-
Harayama, S., P. R. Lehrbach, and K. N. Timmis. 1984. Transposon mutagenesis analysis of meta-cleavage pathway operon genes of the TOL plasmid of Pseudomonas putida mt-2. J. Bacteriol. 160:251-255.
-
(1984)
J. Bacteriol.
, vol.160
, pp. 251-255
-
-
Harayama, S.1
Lehrbach, P.R.2
Timmis, K.N.3
-
24
-
-
0024451702
-
Bacterial aromatic ring-cleavage enzymes are classified into two different gene families
-
Harayama, S., and M. Rekik. 1989. Bacterial aromatic ring-cleavage enzymes are classified into two different gene families. J. Biol. Chem. 264:15328-15333.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 15328-15333
-
-
Harayama, S.1
Rekik, M.2
-
25
-
-
0024457019
-
Physically associated enzymes produce and metabolize 2-hydroxy-2,4- dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida
-
Harayama, S., M. Rekik, K. L. Ngai, and L. N. Ornston. 1989. Physically associated enzymes produce and metabolize 2-hydroxy-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida. J. Bacteriol. 171:6251-6258. (Pubitemid 19266947)
-
(1989)
Journal of Bacteriology
, vol.171
, Issue.11
, pp. 6251-6258
-
-
Harayama, S.1
Rekik, M.2
Ngai, K.-L.3
Ornston, L.N.4
-
26
-
-
0029795374
-
The β-ketoadipate pathway and the biology of self-identity
-
Harwood, C. S., and R. E. Parales. 1996. The β-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 50:553-590.
-
(1996)
Annu. Rev. Microbiol.
, vol.50
, pp. 553-590
-
-
Harwood, C.S.1
Parales, R.E.2
-
27
-
-
0025020696
-
Pseudomonas putida KF715 bphABCD operon encoding biphenyl and polychlorinated biphenyl degradation: Cloning, analysis, and expression in soil bacteria
-
Hayase, N., K. Taira, and K. Furukawa. 1990. Pseudomonas putida KF715 bphABCD operon encoding biphenyl and polychlorinated biphenyl degradation: cloning, analysis, and expression in soil bacteria. J. Bacteriol. 172:1160-1164.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 1160-1164
-
-
Hayase, N.1
Taira, K.2
Furukawa, K.3
-
28
-
-
38349179297
-
Genetic and biochemical characterization of a 4-hydroxybenzoate hydroxylase from Corynebacterium glutamicum
-
Huang, Y., K. X. Zhao, X. H. Shen, C. Y. Jiang, and S. J. Liu. 2008. Genetic and biochemical characterization of a 4-hydroxybenzoate hydroxylase from Corynebacterium glutamicum. Appl. Microbiol. Biotechnol. 78:75-83.
-
(2008)
Appl. Microbiol. Biotechnol.
, vol.78
, pp. 75-83
-
-
Huang, Y.1
Zhao, K.X.2
Shen, X.H.3
Jiang, C.Y.4
Liu, S.J.5
-
29
-
-
3242810505
-
Characterization of the 3-O-methylgallate dioxygenase gene and evidence of multiple 3-O-methylgallate catabolic pathways in Sphingomonas paucimobilis SYK-6
-
Kasai, D., E. Masai, K. Miyauchi, Y. Katayama, and M. Fukuda. 2004. Characterization of the 3-O-methylgallate dioxygenase gene and evidence of multiple 3-O-methylgallate catabolic pathways in Sphingomonas paucimobilis SYK-6. J. Bacteriol. 186:4951-4959.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4951-4959
-
-
Kasai, D.1
Masai, E.2
Miyauchi, K.3
Katayama, Y.4
Fukuda, M.5
-
30
-
-
22544457598
-
Characterization of the gallate dioxygenase gene: Three distinct ring cleavage dioxygenases are involved in syringate degradation by Sphingomonas paucimobilis SYK-6
-
DOI 10.1128/JB.187.15.5067-5074.2005
-
Kasai, D., E. Masai, K. Miyauchi, Y. Katayama, and M. Fukuda. 2005. Characterization of the gallate dioxygenase gene: three distinct ring cleavage dioxygenases are involved in syringate degradation by Sphingomonas paucimobilis SYK-6. J. Bacteriol. 187:5067-5074. (Pubitemid 41022923)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.15
, pp. 5067-5074
-
-
Kasai, D.1
Masai, E.2
Miyauchi, K.3
Katayama, Y.4
Fukuda, M.5
-
31
-
-
17644413773
-
The 2-His-1-carboxylate facial triad: A versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes
-
Koehntop, K. D., J. P. Emerson, and L. Que, Jr. 2005. The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes. J. Biol. Inorg. Chem. 10:87-93.
-
(2005)
J. Biol. Inorg. Chem.
, vol.10
, pp. 87-93
-
-
Koehntop, K.D.1
Emerson, J.P.2
Que Jr., L.3
-
32
-
-
33744728709
-
α-amino-β-carboxymuconic-ε-semialdehyde decarboxylase (ACMSD) is a new member of the amidohydrolase superfamily
-
DOI 10.1021/bi060108c
-
Li, T., H. Iwaki, R. Fu, Y. Hasegawa, H. Zhang, and A. Liu. 2006. α-Amino-β-carboxymuconic-ε-semialdehyde decarboxylase (ACMSD) is a new member of the amidohydrolase superfamily. Biochemistry 45:6628-6634. (Pubitemid 43825363)
-
(2006)
Biochemistry
, vol.45
, Issue.21
, pp. 6628-6634
-
-
Li, T.1
Iwaki, H.2
Fu, R.3
Hasegawa, Y.4
Zhang, H.5
Liu, A.6
-
33
-
-
33748257672
-
Transition metal-catalyzed nonoxidative decarboxylation reactions
-
DOI 10.1021/bi061031v
-
Liu, A., and H. Zhang. 2006. Transition metal-catalyzed nonoxidative decarboxylation reactions. Biochemistry 45:10407-10411. (Pubitemid 44320457)
-
(2006)
Biochemistry
, vol.45
, Issue.35
, pp. 10407-10411
-
-
Liu, A.1
Zhang, H.2
-
34
-
-
33748250307
-
Crystal structure of α-amino-β-carboxymuconate-ε- Semialdeliyde decarboxylase: Insight into the active site and catalytic mechanism of a novel decarboxylation reaction
-
DOI 10.1021/bi060903q
-
Martynowski, D., Y. Eyobo, T. Li, K. Yang, A. Liu, and H. Zhang. 2006. Crystal structure of α-amino-β-carboxymuconate-ε-semialdehyde decarboxylase: insight into the active site and catalytic mechanism of a novel decarboxylation reaction. Biochemistry 45:10412-10421. (Pubitemid 44320458)
-
(2006)
Biochemistry
, vol.45
, Issue.35
, pp. 10412-10421
-
-
Martynowski, D.1
Eyobo, Y.2
Li, T.3
Yang, K.4
Liu, A.5
Zhang, H.6
-
35
-
-
11244352142
-
Cloning and characterization of the genes encoding enzymes for the protocatechuate meta-degradation pathway of Pseudomonas ochraceae NGJ1
-
Maruyama, K., T. Shibayama, A. Ichikawa, Y. Sakou, S. Yamada, and H. Sugisaki. 2004. Cloning and characterization of the genes encoding enzymes for the protocatechuate meta-degradation pathway of Pseudomonas ochraceae NGJ1. Biosci. Biotechnol. Biochem. 68:1434-1441.
-
(2004)
Biosci. Biotechnol. Biochem.
, vol.68
, pp. 1434-1441
-
-
Maruyama, K.1
Shibayama, T.2
Ichikawa, A.3
Sakou, Y.4
Yamada, S.5
Sugisaki, H.6
-
36
-
-
33846485037
-
Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds
-
Masai, E., Y. Katayama, and M. Fukuda. 2007. Genetic and biochemical investigations on bacterial catabolic pathways for lignin-derived aromatic compounds. Biosci. Biotechnol. Biochem. 71:1-15.
-
(2007)
Biosci. Biotechnol. Biochem.
, vol.71
, pp. 1-15
-
-
Masai, E.1
Katayama, Y.2
Fukuda, M.3
-
37
-
-
0034462107
-
Genetic and biochemical characterization of 4-carboxy-2-hydroxymuconate- 6-semialdehyde dehydrogenase and its role in the protocatechuate 4,5-cleavage pathway in Sphingomonas paucimobilis SYK-6
-
DOI 10.1128/JB.182.23.6651-6658.2000
-
Masai, E., K. Momose, H. Hara, S. Nishikawa, Y. Katayama, and M. Fukuda. 2000. Genetic and biochemical characterization of 4-carboxy-2-hydroxymuconate-6- semialdehyde dehydrogenase and its role in the protocatechuate 4,5-cleavage pathway in Sphingomonas paucimobilis SYK-6. J. Bacteriol. 182:6651-6658. (Pubitemid 32249246)
-
(2000)
Journal of Bacteriology
, vol.182
, Issue.23
, pp. 6651-6658
-
-
Masai, E.1
Momose, K.2
Hara, H.3
Nishikawa, S.4
Katayama, Y.5
Fukuda, M.6
-
39
-
-
0037338581
-
Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7
-
Muraki, T., M. Taki, Y. Hasegawa, H. Iwaki, and P. C. Lau. 2003. Prokaryotic homologs of the eukaryotic 3-hydroxyanthranilate 3,4-dioxygenase and 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase in the 2-nitrobenzoate degradation pathway of Pseudomonas fluorescens strain KU-7. Appl. Environ. Microbiol. 69:1564-1572.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1564-1572
-
-
Muraki, T.1
Taki, M.2
Hasegawa, Y.3
Iwaki, H.4
Lau, P.C.5
-
40
-
-
0020560883
-
Complete nucleotide sequence of the metapyrocatechase gene on the TOL plasmid of Pseudomonas putida mt-2
-
Nakai, C., H. Kagamiyama, M. Nozaki, T. Nakazawa, S. Inouye, Y. Ebina, and A. Nakazawa. 1983. Complete nucleotide sequence of the metapyrocatechase gene on the TOL plasmid of Pseudomonas putida mt-2. J. Biol. Chem. 258:2923-2928.
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 2923-2928
-
-
Nakai, C.1
Kagamiyama, H.2
Nozaki, M.3
Nakazawa, T.4
Inouye, S.5
Ebina, Y.6
Nakazawa, A.7
-
41
-
-
0025271597
-
Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis
-
Noda, Y., S. Nishikawa, K. Shiozuka, H. Kadokura, H. Nakajima, K. Yoda, Y. Katayama, N. Morohoshi, T. Haraguchi, and M. Yamasaki. 1990. Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis. J. Bacteriol. 172:2704-2709.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 2704-2709
-
-
Noda, Y.1
Nishikawa, S.2
Shiozuka, K.3
Kadokura, H.4
Nakajima, H.5
Yoda, K.6
Katayama, Y.7
Morohoshi, N.8
Haraguchi, T.9
Yamasaki, M.10
-
42
-
-
27444438472
-
Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440. The prototype of a new subgroup of extradiol dioxygenases
-
Nogales, J., Á. Canales, J. Jiménez-Barbero, J. L. García, and E. Díaz. 2005. Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440. The prototype of a new subgroup of extradiol dioxygenases. J. Biol. Chem. 280:35382-35390.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 35382-35390
-
-
Nogales, J.1
Canales, Á.2
Jiménez-Barbero, J.3
García, J.L.4
Díaz, E.5
-
43
-
-
0025363368
-
Nucleotide sequences of the meta-cleavage pathway enzymes 2-hydroxymuconic semialdehyde dehydrogenase and 2-hydroxymuconic semialdehyde hydrolase from Pseudomonas CF600
-
DOI 10.1016/0167-4781(90)90046-5
-
Nordlund, I., and V. Shingler. 1990. Nucleotide sequences of the meta-cleavage pathway enzymes 2-hydroxymuconic semialdehyde dehydrogenase and 2-hydroxymuconic semialdehyde hydrolase from Pseudomonas CF600. Biochim. Biophys. Acta 1049:227-230. (Pubitemid 20183663)
-
(1990)
Biochimica et Biophysica Acta - Gene Structure and Expression
, vol.1049
, Issue.2
, pp. 227-230
-
-
Nordlund, I.1
Shingler, V.2
-
44
-
-
0031869637
-
Cloning of a Sphingomonas paucimobilis SYK-6 gene encoding a novel oxygenase that cleaves lignin-related biphenyl and characterization of the enzyme
-
Peng, X., T. Egashira, K. Hanashiro, E. Masai, S. Nishikawa, Y. Katayama, K. Kimbara, and M. Fukuda. 1998. Cloning of a Sphingomonas paucimobilis SYK-6 gene encoding a novel oxygenase that cleaves lignin-related biphenyl and characterization of the enzyme. Appl. Environ. Microbiol. 64:2520-2527.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2520-2527
-
-
Peng, X.1
Egashira, T.2
Hanashiro, K.3
Masai, E.4
Nishikawa, S.5
Katayama, Y.6
Kimbara, K.7
Fukuda, M.8
-
45
-
-
0032978661
-
Characterization of the meta-cleavage compound hydrolase gene involved in degradation of the lignin-related biphenyl structure by Sphingomonas paucimobilis SYK-6
-
Peng, X., E. Masai, Y. Katayama, and M. Fukuda. 1999. Characterization of the meta-cleavage compound hydrolase gene involved in degradation of the lignin-related biphenyl structure by Sphingomonas paucimobilis SYK-6. Appl. Environ. Microbiol. 65:2789-2793. (Pubitemid 129526331)
-
(1999)
Applied and Environmental Microbiology
, vol.65
, Issue.6
, pp. 2789-2793
-
-
Peng, X.1
Masai, E.2
Katayama, Y.3
Fukuda, M.4
-
46
-
-
0036731753
-
Characterization of the 5-carboxyvanillate decarboxylase gene and its role in lignin-related biphenyl catabolism in Sphingomonas paucimobilis SYK-6
-
Peng, X., E. Masai, H. Kitayama, K. Harada, Y. Katayama, and M. Fukuda. 2002. Characterization of the 5-carboxyvanillate decarboxylase gene and its role in lignin-related biphenyl catabolism in Sphingomonas paucimobilis SYK-6. Appl. Environ. Microbiol. 68:4407-4415.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 4407-4415
-
-
Peng, X.1
Masai, E.2
Kitayama, H.3
Harada, K.4
Katayama, Y.5
Fukuda, M.6
-
47
-
-
0034858327
-
Comamonas testosteroni BR6020 possesses a single genetic locus for extradiol cleavage of protocatechuate
-
Providenti, M. A., J. Mampel, S. MacSween, A. M. Cook, and R. C. Wyndham. 2001. Comamonas testosteroni BR6020 possesses a single genetic locus for extradiol cleavage of protocatechuate. Microbiology 147:2157-2167.
-
(2001)
Microbiology
, vol.147
, pp. 2157-2167
-
-
Providenti, M.A.1
Mampel, J.2
MacSween, S.3
Cook, A.M.4
Wyndham, R.C.5
-
48
-
-
0027937565
-
Characterization of the pcaR regulatory gene from Pseudomonas putida, which is required for the complete degradation of p-hydroxybenzoate
-
Romero-Steiner, S., R. E. Parales, C. S. Harwood, and J. E. Houghton. 1994. Characterization of the pcaR regulatory gene from Pseudomonas putida, which is required for the complete degradation of p-hydroxybenzoate. J. Bacteriol. 176:5771-5779. (Pubitemid 24280511)
-
(1994)
Journal of Bacteriology
, vol.176
, Issue.18
, pp. 5771-5779
-
-
Romero-Steiner, S.1
Parales, R.E.2
Harwood, C.S.3
Houghton, J.E.4
-
49
-
-
0025115933
-
Subcloning and nucleotide sequence of the 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase gene from Escherichia coli C
-
Roper, D. I., and R. A. Cooper. 1990. Subcloning and nucleotide sequence of the 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase gene from Escherichia coli C. FEBS Lett. 275:53-57.
-
(1990)
FEBS Lett.
, vol.275
, pp. 53-57
-
-
Roper, D.I.1
Cooper, R.A.2
-
50
-
-
0342516720
-
Charomids: Cosmid vectors for efficient cloning and mapping of large or small restriction fragments
-
Saito, I., and G. R. Stark. 1986. Charomids: cosmid vectors for efficient cloning and mapping of large or small restriction fragments. Proc. Natl. Acad. Sci. USA 83:8664-8668.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 8664-8668
-
-
Saito, I.1
Stark, G.R.2
-
51
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
52
-
-
0015219756
-
The meta cleavage of catechol by Azotobacter species. 4-Oxalocrotonate pathway
-
Sala-Trepat, J. M., and W. C. Evans. 1971. The meta cleavage of catechol by Azotobacter species. 4-Oxalocrotonate pathway. Eur. J. Biochem. 20:400-413.
-
(1971)
Eur. J. Biochem.
, vol.20
, pp. 400-413
-
-
Sala-Trepat, J.M.1
Evans, W.C.2
-
53
-
-
0035808974
-
New broad-host-range promoter probe vectors based on the plasmid RK2 replicon
-
Santos, P. M., I. Di Bartolo, J. M. Blatny, E. Zennaro, and S. Valla. 2001. New broad-host-range promoter probe vectors based on the plasmid RK2 replicon. FEMS Microbiol. Lett. 195:91-96.
-
(2001)
FEMS Microbiol. Lett.
, vol.195
, pp. 91-96
-
-
Santos, P.M.1
Di Bartolo, I.2
Blatny, J.M.3
Zennaro, E.4
Valla, S.5
-
54
-
-
33644934151
-
Characterization of the terephthalate degradation genes of Comamonas sp. strain E6
-
Sasoh, M., E. Masai, S. Ishibashi, H. Hara, N. Kamimura, K. Miyauchi, and M. Fukuda. 2006. Characterization of the terephthalate degradation genes of Comamonas sp. strain E6. Appl. Environ. Microbiol. 72:1825-1832.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 1825-1832
-
-
Sasoh, M.1
Masai, E.2
Ishibashi, S.3
Hara, H.4
Kamimura, N.5
Miyauchi, K.6
Fukuda, M.7
-
55
-
-
0026567783
-
Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600
-
Shingler, V., J. Powlowski, and U. Marklund. 1992. Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600. J. Bacteriol. 174:711-724.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 711-724
-
-
Shingler, V.1
Powlowski, J.2
Marklund, U.3
-
56
-
-
0024284551
-
λ ZAP: A bacteriophage λ expression vector with in vivo excision properties
-
Short, J. M., J. M. Fernandez, J. A. Sorge, and W. D. Huse. 1988. λ ZAP: a bacteriophage λ expression vector with in vivo excision properties. Nucleic Acids Res. 16:7583-7600.
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 7583-7600
-
-
Short, J.M.1
Fernandez, J.M.2
Sorge, J.A.3
Huse, W.D.4
-
57
-
-
19744376088
-
Genes of the thymidine salvage pathway: Thymine-7-hydroxylase from a Rhodotorula glutinis cDNA library and iso-orotate decarboxylase from Neurospora crassa
-
Smiley, J. A., M. Kundracik, D. A. Landfried, V. R. Barnes, Sr., and A. A. Axhemi. 2005. Genes of the thymidine salvage pathway: thymine-7-hydroxylase from a Rhodotorula glutinis cDNA library and iso-orotate decarboxylase from Neurospora crassa. Biochim. Biophys. Acta 1723:256-264.
-
(2005)
Biochim. Biophys. Acta
, vol.1723
, pp. 256-264
-
-
Smiley, J.A.1
Kundracik, M.2
Landfried, D.A.3
Barnes Sr., V.R.4
Axhemi, A.A.5
-
58
-
-
33744718828
-
Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase
-
DOI 10.1128/JB.00185-06
-
Sota, M., H. Yano, A. Ono, R. Miyazaki, H. Ishii, H. Genka, E. M. Top, and M. Tsuda. 2006. Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase. J. Bacteriol. 188:4057-4067. (Pubitemid 43825409)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.11
, pp. 4057-4067
-
-
Sota, M.1
Yano, H.2
Ono, A.3
Miyazaki, R.4
Ishii, H.5
Genka, H.6
Top, E.M.7
Tsuda, M.8
-
59
-
-
0023042283
-
Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes
-
Studier, F. W., and B. A. Moffatt. 1986. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J. Mol. Biol. 189:113-130.
-
(1986)
J. Mol. Biol.
, vol.189
, pp. 113-130
-
-
Studier, F.W.1
Moffatt, B.A.2
-
60
-
-
0033566802
-
Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions
-
Sugimoto, K., T. Senda, H. Aoshima, E. Masai, M. Fukuda, and Y. Mitsui. 1999. Crystal structure of an aromatic ring opening dioxygenase LigAB, a protocatechuate 4,5-dioxygenase, under aerobic conditions. Structure Fold. Des. 7:953-965.
-
(1999)
Structure Fold. Des.
, vol.7
, pp. 953-965
-
-
Sugimoto, K.1
Senda, T.2
Aoshima, H.3
Masai, E.4
Fukuda, M.5
Mitsui, Y.6
-
61
-
-
0030990383
-
Novel genes encoding 2-aminophenol 1,6-dioxygenase from Pseudomonas species AP-3 growing on 2-aminophenol and catalytic properties of the purified enzyme
-
Takenaka, S., S. Murakami, R. Shinke, K. Hatakeyama, H. Yukawa, and K. Aoki. 1997. Novel genes encoding 2-aminophenol 1,6-dioxygenase from Pseudomonas species AP-3 growing on 2-aminophenol and catalytic properties of the purified enzyme. J. Biol. Chem. 272:14727-14732.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 14727-14732
-
-
Takenaka, S.1
Murakami, S.2
Shinke, R.3
Hatakeyama, K.4
Yukawa, H.5
Aoki, K.6
-
62
-
-
0036471973
-
Purification and molecular cloning of rat 2-amino-3-carboxymuconate-6- semialdehyde decarboxylase
-
DOI 10.1042/0264-6021:3610567
-
Tanabe, A., Y. Egashira, S. Fukuoka, K. Shibata, and H. Sanada. 2002. Purification and molecular cloning of rat 2-amino-3-carboxymuconate-6- semialdehyde decarboxylase. Biochem. J. 361:567-575. (Pubitemid 34177826)
-
(2002)
Biochemical Journal
, vol.361
, Issue.3
, pp. 567-575
-
-
Tanabe, A.1
Egashira, Y.2
Fukuoka, S.-I.3
Shibata, K.4
Sanada, H.5
-
64
-
-
0027293730
-
Purification and characterization of protocatechuate 2,3-dioxygenase from Bacillus macerans: A new extradiol catecholic dioxygenase
-
Wolgel, S. A., J. E. Dege, P. E. Perkins-Olson, C. H. Jaurez-Garcia, R. L. Crawford, E. Münck, and J. D. Lipscomb. 1993. Purification and characterization of protocatechuate 2,3-dioxygenase from Bacillus macerans: a new extradiol catecholic dioxygenase. J. Bacteriol. 175:4414-4426.
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4414-4426
-
-
Wolgel, S.A.1
Dege, J.E.2
Perkins-Olson, P.E.3
Jaurez-Garcia, C.H.4
Crawford, R.L.5
Münck, E.6
Lipscomb, J.D.7
-
65
-
-
0021943518
-
Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
-
DOI 10.1016/0378-1119(85)90120-9
-
Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119. (Pubitemid 15122816)
-
(1985)
Gene
, vol.33
, Issue.1
, pp. 103-119
-
-
Yanisch-Perron, C.1
Vieira, J.2
Messing, J.3
-
66
-
-
4944251045
-
Thermophilic, reversible γ-resorcylate decarboxylase from Rhizobium sp. strain MTP-10005: Purification, molecular characterization, and expression
-
Yoshida, M., N. Fukuhara, and T. Oikawa. 2004. Thermophilic, reversible γ-resorcylate decarboxylase from Rhizobium sp. strain MTP-10005: purification, molecular characterization, and expression. J. Bacteriol. 186:6855-6863.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 6855-6863
-
-
Yoshida, M.1
Fukuhara, N.2
Oikawa, T.3
-
67
-
-
33947411285
-
Biochemical and genetic analysis of the γ-resorcylate (2,6-dihydroxybenzoate) catabolic pathway in Rhizobium sp. strain MTP-10005: Identification and functional analysis of its gene cluster
-
Yoshida, M., T. Oikawa, H. Obata, K. Abe, H. Mihara, and N. Esaki. 2007. Biochemical and genetic analysis of the γ-resorcylate (2,6- dihydroxybenzoate) catabolic pathway in Rhizobium sp. strain MTP-10005: identification and functional analysis of its gene cluster. J. Bacteriol. 189:1573-1581.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 1573-1581
-
-
Yoshida, M.1
Oikawa, T.2
Obata, H.3
Abe, K.4
Mihara, H.5
Esaki, N.6
|