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Volumn 281, Issue 1-2, 2009, Pages 171-181

Comparison of four molecular markers for genetic analysis in Diospyros L. (Ebenaceae)

Author keywords

Amplified fragment length polymorphism (AFLP); Genetic relationship; Inter retrotransposon amplified polymorphism (IRAP); Japanese persimmon (Diospyros kaki Thunb.); Retrotransposon microsatellite amplified polymorphism (REMAP); Sequence specific amplified polymorphism (SSAP)

Indexed keywords

DIOSPYROS; DIOSPYROS KAKI; EBENACEAE;

EID: 70350123340     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-009-0199-z     Document Type: Article
Times cited : (34)

References (47)
  • 1
    • 33645415035 scopus 로고    scopus 로고
    • TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports
    • Antonius-Klemola K, Kalendar R, Schulman AH (2006) TRIM retrotransposons occur in apple and are polymorphic between varieties but not sports. Theor Appl Genet 112:999-1008.
    • (2006) Theor Appl Genet , vol.112 , pp. 999-1008
    • Antonius-Klemola, K.1    Kalendar, R.2    Schulman, A.H.3
  • 3
    • 0025835296 scopus 로고
    • Fast and sensitive silver staining of DNA in polyacrylamide gels
    • Bassam BJ, Caetano-Anollés G, Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196:80-83.
    • (1991) Anal Biochem , vol.196 , pp. 80-83
    • Bassam, B.J.1    Caetano-Anollés, G.2    Gresshoff, P.M.3
  • 4
    • 38849170365 scopus 로고    scopus 로고
    • Polyploidization as a retraction force in plant genome evolution: Sequence rearrangements in triticale
    • Bento M, Pereira HS, Rocheta M, Gustafson P, Viegas W, Silva M (2008) Polyploidization as a retraction force in plant genome evolution: sequence rearrangements in triticale. PLoS ONE 3:e1402.
    • (2008) PLoS ONE , vol.3
    • Bento, M.1    Pereira, H.S.2    Rocheta, M.3    Gustafson, P.4    Viegas, W.5    Silva, M.6
  • 5
    • 0347270417 scopus 로고    scopus 로고
    • Identification and genomic distribution of gypsy like retrotransposons in Citrus and Poncirus
    • Bernet GP, Asíns MJ (2003) Identification and genomic distribution of gypsy like retrotransposons in Citrus and Poncirus. Theor Appl Genet 108:121-130.
    • (2003) Theor Appl Genet , vol.108 , pp. 121-130
    • Bernet, G.P.1    Asíns, M.J.2
  • 6
    • 33846069269 scopus 로고    scopus 로고
    • Isolation and characterization of Ty1-copia retrotransposon sequences in the blue agave (Agave tequilana Weber var. azul) and their development as SSAP markers for phylogenetic analysis
    • Bousios A, Saldana-Oyarzabal I, Valenzuela-Zapata AG, Wood C, Pearce SR (2007) Isolation and characterization of Ty1-copia retrotransposon sequences in the blue agave (Agave tequilana Weber var. azul) and their development as SSAP markers for phylogenetic analysis. Plant Sci 17:291-298.
    • (2007) Plant Sci , vol.17 , pp. 291-298
    • Bousios, A.1    Saldana-Oyarzabal, I.2    Valenzuela-Zapata, A.G.3    Wood, C.4    Pearce, S.R.5
  • 7
    • 0006809890 scopus 로고    scopus 로고
    • Comparison of RFLP, AFLP and SSR markers for analysing phenetic relationships among cultivars of Vitis vinifera
    • In:, San Diego, CA, USA, January
    • Bowers JE, Meredith CP (1998) Comparison of RFLP, AFLP and SSR markers for analysing phenetic relationships among cultivars of Vitis vinifera. In: Proceedings of the plant and animal V conference, San Diego, CA, USA, 12-16 January.
    • (1998) Proceedings of the Plant and Animal V Conference , pp. 12-16
    • Bowers, J.E.1    Meredith, C.P.2
  • 8
    • 0035192313 scopus 로고    scopus 로고
    • The diversification of Citrus clementina Hort. ex Tan., a vegetatively propagated crop species
    • Bretó MP, Ruiz C, Pina JA, Asíns MJ (2001) The diversification of Citrus clementina Hort. ex Tan., a vegetatively propagated crop species. Mol Phylog Evol 21:285-293.
    • (2001) Mol Phylog Evol , vol.21 , pp. 285-293
    • Bretó, M.P.1    Ruiz, C.2    Pina, J.A.3    Asíns, M.J.4
  • 9
    • 4043102534 scopus 로고    scopus 로고
    • Comparative analysis of seeded and vegetative biotype buffalo grasses based on phylogenetic relationship using ISSRs, SSRs, RAPDs, and SRAPs
    • Budak H, Shearman RC, ParmaksizI I, Dweikat I (2004) Comparative analysis of seeded and vegetative biotype buffalo grasses based on phylogenetic relationship using ISSRs, SSRs, RAPDs, and SRAPs. Theor Appl Genet 109:280-288.
    • (2004) Theor Appl Genet , vol.109 , pp. 280-288
    • Budak, H.1    Shearman, R.C.2    ParmaksizI, I.3    Dweikat, I.4
  • 10
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11-15.
    • (1987) Phytochem Bull , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 11
    • 57349145373 scopus 로고    scopus 로고
    • Development of retrotransposon primers and their utilization for germplasm identification in Diospyros spp. (Ebenaceae)
    • Du X, Zhang Q, Luo Z (2009) Development of retrotransposon primers and their utilization for germplasm identification in Diospyros spp. (Ebenaceae). Tree Genet Genomes 5:235-245.
    • (2009) Tree Genet Genomes , vol.5 , pp. 235-245
    • Du, X.1    Zhang, Q.2    Luo, Z.3
  • 12
    • 0031782964 scopus 로고    scopus 로고
    • Polymorphism of insertion sites of Ty1-copia class retrotransposons and its use for linkage and diversity analysis in pea
    • Ellis THN, Poyser SJ, Knox MR, Vershinin AV, Ambrose MJ (1998) Polymorphism of insertion sites of Ty1-copia class retrotransposons and its use for linkage and diversity analysis in pea. Mol Gen Genet 260:9-19.
    • (1998) Mol Gen Genet , vol.260 , pp. 9-19
    • Ellis, T.H.N.1    Poyser, S.J.2    Knox, M.R.3    Vershinin, A.V.4    Ambrose, M.J.5
  • 13
    • 0030841468 scopus 로고    scopus 로고
    • Fingerprinting trifoliate orange germplasm accessions with isozymes, RFLPs and inter-simple sequence repeat markers
    • Fang DQ, Roose M, Krueger RR, Federici CT (1997) Fingerprinting trifoliate orange germplasm accessions with isozymes, RFLPs and inter-simple sequence repeat markers. Theor Appl Genet 95:211-219.
    • (1997) Theor Appl Genet , vol.95 , pp. 211-219
    • Fang, D.Q.1    Roose, M.2    Krueger, R.R.3    Federici, C.T.4
  • 14
    • 67649450823 scopus 로고    scopus 로고
    • FAO
    • FAO (2008) FAOSTAT database. http://faostat.fao.org/.
    • (2008) FAOSTAT Database
  • 15
    • 0347660889 scopus 로고    scopus 로고
    • The use of AFLP markers for cultivar identification in apricot
    • Geuna F, Toschi M, Bassi D (2003) The use of AFLP markers for cultivar identification in apricot. Plant Breed 122:526-531.
    • (2003) Plant Breed , vol.122 , pp. 526-531
    • Geuna, F.1    Toschi, M.2    Bassi, D.3
  • 16
    • 33845360289 scopus 로고    scopus 로고
    • Genetic relationships of some PCNA persimmons (Diospyros kaki Thunb.) from China and Japan revealed by SRAP analysis
    • Guo D, Luo Z (2006) Genetic relationships of some PCNA persimmons (Diospyros kaki Thunb.) from China and Japan revealed by SRAP analysis. Genet Res Crop Evol 53:1597-1603.
    • (2006) Genet Res Crop Evol , vol.53 , pp. 1597-1603
    • Guo, D.1    Luo, Z.2
  • 17
    • 30944453270 scopus 로고    scopus 로고
    • Genetic relationships of Diospyros kaki Thunb. and related species revealed by IRAP and REMAP analysis
    • Guo D, Zhang H, Luo Z (2006) Genetic relationships of Diospyros kaki Thunb. and related species revealed by IRAP and REMAP analysis. Plant Sci 170:528-533.
    • (2006) Plant Sci , vol.170 , pp. 528-533
    • Guo, D.1    Zhang, H.2    Luo, Z.3
  • 18
    • 67650455971 scopus 로고    scopus 로고
    • Genetic mapping of the apospory-specific genomic region in Pennisetum squamulatum using retrotransposon-based molecular markers
    • doi:10.1007/s00122-009-1029-y
    • Huo H, Conner JA, Ozias-Akins P (2009) Genetic mapping of the apospory-specific genomic region in Pennisetum squamulatum using retrotransposon-based molecular markers. Theor Appl Genet. doi:10.1007/s00122-009-1029-y.
    • (2009) Theor Appl Genet
    • Huo, H.1    Conner, J.A.2    Ozias-Akins, P.3
  • 19
  • 20
    • 0034612315 scopus 로고    scopus 로고
    • Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence
    • Kalendar R, Tanskanen J, Immonen S, Nevo E, Schulman AH (2000) Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci USA 97:6603-6607.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6603-6607
    • Kalendar, R.1    Tanskanen, J.2    Immonen, S.3    Nevo, E.4    Schulman, A.H.5
  • 21
    • 35848936255 scopus 로고    scopus 로고
    • Persimmon. Genome mapping and molecular breed in plants
    • Kanzaki S, Yonemori K (2007) Persimmon. Genome mapping and molecular breed in plants. Fruits Nuts 4:353-358.
    • (2007) Fruits Nuts , vol.4 , pp. 353-358
    • Kanzaki, S.1    Yonemori, K.2
  • 22
    • 0034528374 scopus 로고    scopus 로고
    • Evaluation of RFLP analysis for discriminating PCNA genotype in some persimmon cultivars
    • Kanzaki S, Yonemori K, Sato A, Yamada M, Sugiura A (2000) Evaluation of RFLP analysis for discriminating PCNA genotype in some persimmon cultivars. J Jpn Soc Hortic Sci 69:702-704.
    • (2000) J Jpn Soc Hortic Sci , vol.69 , pp. 702-704
    • Kanzaki, S.1    Yonemori, K.2    Sato, A.3    Yamada, M.4    Sugiura, A.5
  • 24
    • 2342541085 scopus 로고    scopus 로고
    • Vine-1 retrotransposon-based sequence-specific amplified polymorphism for Vitis vinifera L. genotyping
    • Labra M, Imazio S, Grassi F, Rossoni M, Sala F (2004) Vine-1 retrotransposon-based sequence-specific amplified polymorphism for Vitis vinifera L. genotyping. Plant Breed 123:180-185.
    • (2004) Plant Breed , vol.123 , pp. 180-185
    • Labra, M.1    Imazio, S.2    Grassi, F.3    Rossoni, M.4    Sala, F.5
  • 26
    • 0033764322 scopus 로고    scopus 로고
    • Application of BARE-1 retrotransposon markers to the mapping of a major resistance gene for net blotch in barley
    • Manninen O, Kalendar R, Robinson J, Schulman AH (2000) Application of BARE-1 retrotransposon markers to the mapping of a major resistance gene for net blotch in barley. Mol Gen Genet 264:325-334.
    • (2000) Mol Gen Genet , vol.264 , pp. 325-334
    • Manninen, O.1    Kalendar, R.2    Robinson, J.3    Schulman, A.H.4
  • 27
    • 0033923714 scopus 로고    scopus 로고
    • Assessment of genetic relationships among Pyrus species and cultivars using AFLP and RAPD markers
    • Monte-Corvo L, Cabrita L, Oliveira CM, Leitaõ JM (2000) Assessment of genetic relationships among Pyrus species and cultivars using AFLP and RAPD markers. Gen Res Crop Evol 7:257-265.
    • (2000) Gen Res Crop Evol , vol.7 , pp. 257-265
    • Monte-Corvo, L.1    Cabrita, L.2    Oliveira, C.M.3    Leitaõ, J.M.4
  • 28
    • 33847228077 scopus 로고    scopus 로고
    • Isolation of Ty1-copia putative LTR sequences and their use as a tool to analyse genetic diversity in Olea europaea
    • Natali L, Giordani T, Buti M, Cavallini A (2007) Isolation of Ty1-copia putative LTR sequences and their use as a tool to analyse genetic diversity in Olea europaea. Mol Breeding 19:255-265.
    • (2007) Mol Breeding , vol.19 , pp. 255-265
    • Natali, L.1    Giordani, T.2    Buti, M.3    Cavallini, A.4
  • 29
    • 0033197649 scopus 로고    scopus 로고
    • Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies
    • Pearce SR, Stuart-Rogers C, Knox MR, Kumar A, Ellis THN, Flavel AJ (1999) Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies. Plant J 19:711-717.
    • (1999) Plant J , vol.19 , pp. 711-717
    • Pearce, S.R.1    Stuart-Rogers, C.2    Knox, M.R.3    Kumar, A.4    Ellis, T.H.N.5    Flavel, A.J.6
  • 34
    • 0030766801 scopus 로고    scopus 로고
    • Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RADPs
    • Russell JR, Fuller JD, Macaulay M, Hatz BG, Jahoor A, Powell W, Waugh R (1997) Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RADPs. Theor Appl Genet 95:714-722.
    • (1997) Theor Appl Genet , vol.95 , pp. 714-722
    • Russell, J.R.1    Fuller, J.D.2    Macaulay, M.3    Hatz, B.G.4    Jahoor, A.5    Powell, W.6    Waugh, R.7
  • 36
    • 35748983553 scopus 로고    scopus 로고
    • Molecular markers to assess genetic diversity
    • Schulman AH (2007) Molecular markers to assess genetic diversity. Euphytica 158:313-321.
    • (2007) Euphytica , vol.158 , pp. 313-321
    • Schulman, A.H.1
  • 37
    • 18844363214 scopus 로고    scopus 로고
    • Genetic diversity among barley cultivars assessed by sequence-specific amplification polymorphism
    • Soleimani VD, Baum BR, Johnson DA (2005) Genetic diversity among barley cultivars assessed by sequence-specific amplification polymorphism. Theor Appl Genet 110:1290-1300.
    • (2005) Theor Appl Genet , vol.110 , pp. 1290-1300
    • Soleimani, V.D.1    Baum, B.R.2    Johnson, D.A.3
  • 39
    • 17444395610 scopus 로고    scopus 로고
    • Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR
    • Tam SM, Mhiri C, Vogelaar A, Kerkveld M, Pearce SR, Grandbastien MA (2005) Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR. Theor Appl Genet 110:819-831.
    • (2005) Theor Appl Genet , vol.110 , pp. 819-831
    • Tam, S.M.1    Mhiri, C.2    Vogelaar, A.3    Kerkveld, M.4    Pearce, S.R.5    Grandbastien, M.A.6
  • 40
    • 30544438210 scopus 로고    scopus 로고
    • Retrotransposon characterisation and fingerprinting of apple clones by S-SAP markers
    • Venturi S, Dondini L, Donini P, Sansavini S (2006) Retrotransposon characterisation and fingerprinting of apple clones by S-SAP markers. Theor Appl Genet 112:440-444.
    • (2006) Theor Appl Genet , vol.112 , pp. 440-444
    • Venturi, S.1    Dondini, L.2    Donini, P.3    Sansavini, S.4
  • 42
    • 0000494457 scopus 로고    scopus 로고
    • Chinese persimmon germplasm resources
    • Wang R, Yang Y, Li G (1997) Chinese persimmon germplasm resources. Acta Hortic 436:43-50.
    • (1997) Acta Hortic , vol.436 , pp. 43-50
    • Wang, R.1    Yang, Y.2    Li, G.3
  • 43
    • 0030991387 scopus 로고    scopus 로고
    • Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP)
    • Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BB, Powell W (1997) Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Mol Gen Genet 253:687-694.
    • (1997) Mol Gen Genet , vol.253 , pp. 687-694
    • Waugh, R.1    McLean, K.2    Flavell, A.J.3    Pearce, S.R.4    Kumar, A.5    Thomas, B.B.6    Powell, W.7
  • 44
    • 18044366414 scopus 로고    scopus 로고
    • Identification of persimmon (Diospyros kaki) cultivars and phenetic relationships between Diospyros species by more effective RAPD analysis
    • Yamagishi M, Matsumoto S, Nakatsuka A, Itamura H (2005) Identification of persimmon (Diospyros kaki) cultivars and phenetic relationships between Diospyros species by more effective RAPD analysis. Sci Hortic 105:283-290.
    • (2005) Sci Hortic , vol.105 , pp. 283-290
    • Yamagishi, M.1    Matsumoto, S.2    Nakatsuka, A.3    Itamura, H.4
  • 47
    • 35648947354 scopus 로고    scopus 로고
    • Molecular diversity in persimmon (Diospyros kaki L.) cultivars growing around Hatay province in Turkey
    • Yýldýz M, Bayazít S, Cebesoy S, Aras S (2007) Molecular diversity in persimmon (Diospyros kaki L.) cultivars growing around Hatay province in Turkey. Afr J Biotech 6:2393-2399.
    • (2007) Afr J Biotech , vol.6 , pp. 2393-2399
    • Yýldýz, M.1    Bayazít, S.2    Cebesoy, S.3    Aras, S.4


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