Prolyl-4-hydroxylase (AtP4H1) mediates and mimics low oxygen response in Arabidopsis thaliana

Functional and Integrative Genomics

Volumn 9, Issue 4, 2009, Pages 525-535

  Asif, Mehar Hasan ^a   Trivedi, Prabodh Kumar ^a   Misra, Prashant ^a   Nath, Pravendra ^a  

^a CSIR NATIONAL BOTANICAL RESEARCH INSTITUTE   (India)

Author keywords

Anoxia; AtP4H1; Hypoxia; Prolyl 4 hydroxylase

Indexed keywords

ALCOHOL DEHYDROGENASE; HYDROXYPROLINE; PHOSDUCIN; PHOSDUCIN 1; PHOSDUCIN 2; PROCOLLAGEN PROLINE 2 OXOGLUTARATE 4 DIOXYGENASE; SUCROSE SYNTHASE; UNCLASSIFIED DRUG;

ANOXIA; ARABIDOPSIS; ARTICLE; CARBON SOURCE; CONTROLLED STUDY; DOWN REGULATION; ENZYME ACTIVITY; GENE EXPRESSION REGULATION; GENE OVEREXPRESSION; GENE REGULATORY NETWORK; HYPOXIA; MICROARRAY ANALYSIS; NONHUMAN; PHENOTYPE; PLANT DEVELOPMENT; PLANT GENOME; PLANT GROWTH; PLANT METABOLISM; PLANT RESPONSE; PLANT STRESS; PRIORITY JOURNAL; ROOT HAIR; ROOT LENGTH; SEED SIZE; TRANSGENIC PLANT; TRICHOME; UPREGULATION; WILD TYPE;

ANIMALS; ANOXIA; ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE EXPRESSION PROFILING; HYDROXYPROLINE; MICROARRAY ANALYSIS; OXYGEN; PROCOLLAGEN-PROLINE DIOXYGENASE; TRANSCRIPTION FACTORS;

ANIMALIA; ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 70350029421     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-009-0118-y     Document Type: Article

References (34)

1. Baxter-Burrell A, Chang R, Springer P, Bailey-Serres J (2003) Gene and enhancer trap transposable elements reveal oxygen deprivation- regulated genes and their complex pattern of expression in Arabidopsis. Ann Bot 91:129-141
2. Berra E, Ginouves A, Pouyssegur J (2006) The hypoxia-inducible-factor hydroxylases bring fresh air into hypoxia signaling. EMBO rep 7:41-45
3. Bolwell GP, Robbins MP, Dixon RA (1985) Elicitor-induced prolyl hydroxylase from French bean (Phaseolus vulgaris). Localization, purification and properties. Biochem J 229:693-699
4. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Ann Biochem 72:248-254
5. Bruick RK, McKnight SL (2001) A conserved family of prolyl 4-hydroxylases that modify HIF. Science 294:1337-1340
6. Cechin AL, Sinigaglia M, Lemke N, Echeverrigaray S, Cabrera OG, Pereira GA, Mombach JC (2008) Cupin: A candidate molecular structure for the Nep1-like protein family. BMC Plant Biol 30:8-50
7. Clough SJ, Bent AF (1998) Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16:735-743
8. Epstein AC, Gleadle JM, Mc Neil LA, Hewitson KS, O'Rourke J, Mole DR, Mukherji M, Metzen E, Wilson MI, Dhanda A, Tian YM, Masson N, Hamilton DL, Jaakkola P, Barstead R, Hodgkin J, Maxwell PH, Pugh CW, Schofield CJ, Ratcliffe PJ (2001) C.elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation. Cell 107:43-54
9. Eriksson M, Myllyharju J, Tu H, Hellman M, Kivirikko KI (1999) Evidence for 4-hydroxyproline in viral proteins. Characterization of a viral prolyl 4-hydroxylase and its peptide substrates. J Biol Chem 274:22131-22134
10. Estevez JM, Kieliszewski MJ, Khitrov N, Somerville C (2006) Characterisation of synthetic hydroxyproline-rich proteoglycans with arabinogalactan protein and extension motifs in Arabidopsis. Plant Physiol 142:458-470
11. Garcia-Hernandez ER, Lopez GIC (2005) Structural Cell wall proteins from five pollen species and their relationship with boron. Braz J Plant Physiol 17:375-381
12. Geigenberger P (2003) Response of plant metabolism to too little oxygen. Curr Opin Plant Biol 6:247-256
13. Hewitson KS, McNeill LA, Riordan MV, Tian Y, Bullock AN, Welford RW, Elkins JM, Oldham NJ, Bhattacharya S, Gleadle JM, Ratcliffe PJ, Pugh CW, Schofield CJ (2002) Hypoxia-inducible Factor (HIF) Asparagine Hydroxylase Is Identical to Factor Inhibiting HIF (FIH) and Is Related to the Cupin Structural Family. J Biol Chem 277:26351-26355
14. Hieta R, Myllyharju J (2002) Cloning and characterization of a low molecular weight prolyl 4-hydroxylase from Arabidopsis thaliana. Effective hydroxylation of proline-rich, collagen-like, and hypoxia-inducible transcription factor alpha-like peptides. J Biol Chem 277:23965-23971
15. Hughes BT, Espenshade PJ (2008) Oxygen-regulated degradation of fission yeast SREBP by Ofd1, a prolyl hydroxylase family member. EMBO J 27:1491-1501
16. Hulskamp M (2004) Plant trichomes: A model for cell differentiation. Nat Rev Mol Cell Biol 5:471-480
17. Ivan M, Haberberger T, Gervasi DC, Michelson KS, Günzler V, Kondo K, Yang H, Sorokina I, Conaway RC, Conaway JW, Kaelin WG (2002) Biochemical purification and pharmacological inhibition of a mammalian prolyl hydroxylase acting on hypoxia-inducible factor. Proc Natl Acad Sci USA 99:13459-13464
18. Kaska DD, Myllylä R, Günzler V, Gibor A, Kivirikko KI (1988) Prolyl 4-hydroxylase from Volvox carteri. A low-Mr enzyme antigenically related to the α subunit of the vertebrate enzyme. Biochem J 256:257-263
19. Kivirikko KI, Myllylä R, Pihlajaniemi T (1992) Hydroxylation of proline and lysine residues in collagens and other animal and plant proteins. In: Harding JJ, Crabbe MJC (eds) Post-translational modifications of proteins. CRC, Boca Raton, pp 1-51
20. Klok EJ, Wilson IW, Wilson D, Chapman SC, Ewing RM, Somerville SC, Peacock JW, Dolferus R, Dennis ES (2002) Expression Profile Analysis of the low oxygen response in Arabidopsis root cultures. Plant Cell 14:2481-2494
21. Li C, Wong WH (2001) Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc Natl Acad Sci USA 98:31-36
22. Liu F, VanToai T, Moy LP, Bock G, Linford LD, Quackenbush J (2005) Global transcription profiling reveals comprehensive insights into hypoxic response in Arabidopsis. Plant Physiol 137:1115-1129
23. Loreti E, Poggi A, Novi G, Alpi A, Perata P (2005) A Genome-Wide Analysis of the Effects of Sucrose on Gene Expression in Arabidopsis Seedlings under Anoxia. Plant Physiol 137:1130-1138
24. Myllyharju J (2003) Prolyl 4-hydroxylases, the key enzymes of collagen biosynthesis. Matrix Biol 22:15-24
25. Qi HH, Ongusaha PP, Myllyharju J, Cheng D, Pakkanen O, Shi Y, Lee SW, Peng J, Shi Y (2008) Prolyl 4-hydroxylation regulates Argonaute 2 stability. Nature 455(7211):421-424 doi: 10.1038/nature07186
26. Ringli C, Bigler L, Kuhn BM, Leiber RM, Diet A, Santelia D, Frey B, Pollmann S, Kleina M (2008) The modified flavonol glycosylation profile in the Arabidopsis rol1 mutants results in alterations in plant growth and cell shape formation. Plant Cell 20(6):1470-1481 doi: 10.1105/ tpc.107.053249
27. Schultz CJ, Jhonson KL, Currie G, Bacic A (2000) The classical arabinogalactan protein gene family of Arabidopsis. Plant Cell 12:1751-1768
28. Tanaka M, Shibata H, Uchida T (1980) A new prolyl hydroxylase acting on poly-L-proline, from suspension cultured cells of Vinca rosea. Biochim Biophys Acta 616:188-198
29. Thimm O, Bläsing O, Gibon Y, Nagel A, Meyer S, Krüger P, Selbig J, Müller LA, Rhee SY, Stitt M (2004) MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 37:914-939
30. Tiainen P, Myllyharju J, Koivunen P (2005) Characterization of a second Arabidopsis thaliana prolyl 4-hydroxylase with distinct substrate specificity. J Biol Chem 280:1142-1148
31. Vlad F, Spano T, Vlad D, Daher FB, Ouelhadj A, Kalatizis P (2007) Arabidopsis prolyl 4- hydroxylase are differentially expressed in response to hypoxia, anoxia and mechanical wounding. Physiol Plant 130:471-483
32. Wojtaszek P, Smith CG, Bolwell GP (1999) Ultrastructural localisation and further biochemical characterisation of prolyl 4-hydroxylase from Phaseolus vulgaris: Comparative analysis. Int J Biochem Cell Biol 31:463-477
33. Yuasa K, Toyooka K, Fukuda H, Matsuoka K (2005) Membrane-anchored prolyl hydroxylase with an export signal from the endoplasmic reticulum. Plant J 41:81-94
34. Zimmermann P, Hirsch-Hoffmann M, Henning L, Gruissem W (2004) GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox. Plant Physiol 136:2621-2632