A comparative proteomics approach to detect unintended effects in transgenic Arabidopsis

Journal of Genetics and Genomics

Volumn 36, Issue 10, 2009, Pages 629-639

  Ren, Yanfei ^a   Lv, Jun ^b   Wang, Hua ^a   Li, Linchuan ^a   Peng, Yufa ^b   Qu, Li Jia ^a  

^a PEKING UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

2 D PAGE; Arabidopsis thaliana; biosafety; MALDI TOF; proteomics; unintended effect

Indexed keywords

ALLERGEN; PHOSPHINOTHRICIN ACETYL TRANSFERASE; PHOSPHINOTHRICIN DERIVATIVE; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; BIOSAFETY; COLD TREATMENT; DOWN REGULATION; ENERGY TRANSFER; ENVIRONMENTAL STRESS; GENE INSERTION; NONHUMAN; PROTEIN EXPRESSION; PROTEOMICS; TRANSGENE; TRANSGENIC PLANT; UPREGULATION;

ACETYLTRANSFERASES; AMINO ACID SEQUENCE; ARABIDOPSIS; COLD TEMPERATURE; DNA, BACTERIAL; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FEASIBILITY STUDIES; GENE EXPRESSION PROFILING; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; PROTEOMICS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; STRESS, PHYSIOLOGICAL;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 70349975885     PISSN: 16738527     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1673-8527(08)60155-1     Document Type: Article

References (20)

1. Agrawal G.K., Hajduch M., Graham K., and Thelen J.J. In-depth investigation of the soybean seed-filling proteome and comparison with a parallel study of rapeseed. Plant Physiol. 148 (2008) 504-518
2. Amme S., Matros A., Schlesier B., and Mock H.P. Proteome analysis of cold stress response in Arabidopsis thaliana using DIGE-technology. J. Exp. Bot. 57 (2006) 1537-1546
3. Bae M.S., Cho E.J., Choi E.Y., and Park O.K. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Plant J. 36 (2003) 652-663
4. Cellini F., Chesson A., Colquhoun I., Constable A., Davies H.V., Engel K.H., Gatehouse A.M.R., Karenlampi S., Kok E.J., Leguay J.J., Lehesranta S., Noteborn H.P., Pedersen J., and Smith M. Unintended effects and their detection in genetically modified crops. Food Chem. Toxicol. 42 (2004) 1089-1125
5. Conner A.J., and Jacobs J.M.E. Food risks from transgenic crops in perspective. Nutrition 16 (2000) 709-717
6. Corpillo D., Gardini G., Vaira A.M., Basso M., Aime S., Accotto G.R., and Fasano M. Proteomics as a tool to improve investigation of substantial equivalence in genetically modified organisms: The case of a virus-resistant tomato. Proteomics 4 (2004) 193-200
7. Damerval C., Devienne D., Zivy M., and Thiellement H. Technical improvements in two-dimensional electrophoresis increase the level of genetic-variation detected in wheat-seedling proteins. Electrophoresis 7 (1986) 52-54
8. Delhaize E., Hebb D.M., Richards K.D., Lin J.M., Ryan P.R., and Gardner R.C. Cloning and expression of a wheat (Triticum aestivum L.) phosphatidylserine synthase cDNA-Overexpression in plants alters the composition of phospholipids. J. Biol. Chem. 274 (1999) 7082-7088
9. Gallardo K., Job C., Groot S.P.C., Puype M., Demol H., Vandekerckhove J., and Job D. Proteomic analysis of Arabidopsis seed germination and priming. Plant Physiol. 126 (2001) 835-848
10. Giacomelli L., Rudella A., and van Wijk K.J. High light response of the thylakoid proteome in Arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Plant Physiol. 141 (2006) 685-701
11. Hashimoto W., Momma K., Katsube T., Ohkawa Y., Ishige T., Kito M., Utsumi S., and Murata K. Safety assessment of genetically engineered potatoes with designed soybean glycinin: Compositional analyses of the potato tubers and digestibility of the newly expressed protein in transgenic potatoes. J. Sci. Food Agric. 79 (1999) 1607-1612
12. Kuiper H.A. Food and chemical toxicology -Introduction. Food and Chemical Toxicology 42 (2004) 1044-1045
13. Lehesranta S.J., Davies H.V., Shepherd L.V.T., Nunan N., McNicol J.W., Auriola S., Koistinen K.M., Suomalainen S., Kokko H.I., and Karenlampi S.O. Comparison of tuber proteomes of potato varieties, landraces, and genetically modified lines. Plant Physiol. 138 (2005) 1690-1699
14. Liu Y.G., Mitsukawa N., Oosumi T., and Whittier R.F. Efficient isolation and mapping of Arabidopsis-thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR. Plant J. 8 (1995) 457-463
15. Plomion C., Pionneau C., Brach J., Costa P., and Bailleres H. Compression wood-responsive proteins in developing xylem of maritime pine (Pinus pinaster Ait.). Plant Physiol. 123 (2000) 959-969
16. Qin G.J., Kang D.M., Dong Y.Y., Shen Y.P., Zhang L., Deng X.H., Zhang Y., Li S., Chen N., Niu W.R., Chen C., Liu P., Chen H., Li J., Ren Y., Gu H., Deng X.W., and Qu L.J. Obtaining and analysis of flanking sequences from T-DNA transformants of Arabidopsis. Plant Sci. 165 (2003) 941-949
17. Ruebelt M.C., Lipp M., Reynolds T.L., Schmuke J.J., Astwood J.D., DellaPenna D., Engel K.H., and Jany K.D. Application of two-dimensional gel electrophoresis to interrogate alterations in the proteome of gentically modified crops. 3. Assessing unintended effects. J. Agric. Food Chem. 54 (2006) 2169-2177
18. Smith N., Kilpatrick J.B., and Whitelam G.C. Superfluous transgene integration in plants. Criti. Rev. Plant Sci. 20 (2001) 215-249
19. Vangelder W.M.J., and Scheffer J.J.C. Transmission of steroidal glycoalkaloids from solanum-vernei to the cultivated potato. Phytochemistry 30 (1991) 165-168
20. Vincent D., Lapierre C., Pollet B., Cornic G., Negroni L., and Zivy M. Water deficits affect caffeate O-methyltransferase, lignification, and related enzymes in maize leaves. A proteomic investigation. Plant Physiol. 137 (2005) 949-960