Changes in marine prokaryotic community induced by varying types of dissolved organic matter and subsequent grazing pressure

Journal of Plankton Research

Volumn 31, Issue 11, 2009, Pages 1373-1383

  Alonso Sáez, Laura ^a,b   Unanue, Marian ^b   Latatu, Ainhoa ^b   Azua, Iñigo ^b   Ayo, Begoña ^b   Artolozaga, Itxaso ^b   Iriberri, Juan ^b  

^a UPPSALA UNIVERSITY   (Sweden)

^b UNIVERSITY OF THE BASQUE COUNTRY UPV EHU   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ABUNDANCE; BIOMASS; COMMUNITY DYNAMICS; DISSOLVED ORGANIC MATTER; FLAGELLATE; GLUCOSE; GRAZING PRESSURE; MARINE ECOSYSTEM; MICROCOSM; NITROGEN; PROKARYOTE; SIZE STRUCTURE; YEAST;

ALPHAPROTEOBACTERIA; GAMMAPROTEOBACTERIA; PROKARYOTA;

EID: 70349941053     PISSN: 01427873     EISSN: 14643774     Source Type: Journal    
DOI: 10.1093/plankt/fbp081     Document Type: Article

References (53)

1. Alonso, C. and Pernthaler, J. (2006) Concentration-dependent patterns of leucine incorporation in coastal picoplankton. Appl. Environ. Microbiol., 72, 2141-2147.
2. Alonso-Sáez, L. and Gasol, J. M. (2007) Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in northwestern Mediterranean coastal waters. Appl. Environ. Microbiol., 73, 3528-3535.
3. Amann, R. and Fuchs, B. M. (2008) Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat. Rev. Microbiol., 6, 339-348.
4. Amann, R., Ludwig, W. and Schleifer, K. (1995) Phylogenetic identifi- cation and in situ detection of individual microbial cells without cultivation. Microbiol. Rev., 59, 143-169.
5. Artolozaga, I., Ayo, B., Latatu, A. et al. (2000) Spatial distribution of protists in the presence of macroaggregates in a marine system. FEMS Microbiol. Ecol., 33, 191-196.
6. Artolozaga, I., Valcarcel, M., Ayo, B. et al. (2002) Grazing rates of bacterivorous protists inhabiting diverse marine planktonic microenvironment. Limnol. Oceanogr., 47, 142-150.
7. Ayo, B., Santamaria, E., Latatu, A. et al. (2001) Grazing rates of diverse morphotypes of bacterivorous ciliates feeding on four allochthonous bacteria. Lett. Appl. Microbiol., 33, 455-460.
8. Biddanda, B. A. and Pomeroy, L. R. (1988) Microbial aggregation and degradation of phytoplankton-derived detritus in seawater. I. Microbial succession. Mar. Ecol. Prog. Ser., 42, 79-88.
9. Caron, D. A. (1987) Grazing of attached bacteria by heterotrophic microflagellates. Microb. Ecol., 13, 203-218.
10. Caron, D. A., Goldman, J. C. and Dennett, M. R. (1988) Experimental demonstration of the roles of bacteria and bacterivorous protozoa in plankton nutrient cycles. Hydrobiologia, 159, 27-40.
11. Cole, J. J., Findlay, S. and Pace, M. L. (1988) Bacterial production in freshwater and saltwater ecosystems-a cross-system overview. Mar. Ecol. Prog. Ser., 43, 1-10.
12. Cottrell, M. T. and Kirchman, D. (2000) Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl. Environ. Microbiol., 66, 1692-1697.
13. Decho, A. W. (1990) Microbial exopolymer secretions in ocean environment: their role(s) in food webs and marine processes. Oceanogr. Mar. Biol. Annu. Rev., 28, 73-153.
14. Ducklow, H. W. and Carlson, C. A. (1992) Oceanic bacterial production. Adv. Microb. Ecol., 12, 113-181.
15. Eilers, H., Pernthaler, J. and Amann, R. (2000) Succession of pelagic marine bacteria during enrichment: a close look at cultivation-induced shifts. Appl. Environ. Microbiol., 66, 4634-4640.
16. Elifantz, H., Malmstrom, R. R., Cottrell, M. T. et al. (2005) Assimilation of polysaccharides and glucose by major bacterial groups in the Delaware Estuary. Appl. Environ. Microbiol., 71, 7799-7805.
17. Fuhrman, J. A. (1999) Marine viruses and their biogeochemical and ecological effects. Nature, 399, 541-548.
18. Fuhrman, J. A. and Azam, F. (1980) Bacterioplankton secondary production estimates for coastal waters of British Columbia, Antarctica and California. Appl. Environ. Microbiol., 39, 1085-1095.
19. Glöckner, F. O., Fuchs, M. F. and Amann, R. (1999) Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol., 65, 3721-3726.
20. Hahn, M. W. and Höfle, M. G. (2001) Grazing of protozoa and its effect on populations of aquatic bacteria. FEMS Microbiol. Ecol., 35, 113-121.
21. Hahn, M. W., Lünsdorf, H., Wu, Q. et al. (2003) Isolation of novel ultramicrobacteria classified as Actinobacteria from five freshwater habitats in Europe and Asia. Appl. Environ. Microbiol., 69, 1442-1451.
22. Harvey, H. R., Rachael, Y. D. and Kirchman, D. L. (2006) Impact of DOM composition on bacterial lipids and community structure in estuaries. Aquat. Microb. Ecol., 42, 105-117.
23. Holmquist, L. and Kjelleberg, S. (1993) Changes in viability, respiratory activity and morphology of the marine Vibrio sp. Strain S14 during starvation of individual nutrients and subsequent recovery. FEMS Microbiol. Ecol., 12, 215-223. (Pubitemid 223031352)
24. Jürgens, K. and Güde, H. (1994) The potential importance of grazing resistant bacteria in planktonic systems. Mar. Ecol. Prog. Ser., 112, 169-188.
25. Jürgens, K. and Matz, C. (2002) Predation as a shaping force for the phenotypic and genotypic composition of planktonic bacteria. Antonie Van Leeuwenhoek Int. J. Gen. Mol. Microbiol., 81, 413-434.
26. Jürgens, K., Pernthaler, J., Schalla, S. et al. (1999) Morphological and compositional changes in a planktonic bacterial community in response to enhanced protozoan grazing. Appl. Environ. Microbiol., 65, 1241-1250.
27. Jürgens, K., Gasol, J. M. and Vaqué, D. (2000) Bacteria-flagellate coupling in microcosms experiments in the Central Atlantic Ocean. J. Exp. Mar. Biol. Ecol., 245, 127-147.
28. Kirchman, D. L. and Rich, J. H. (1997) Regulation of bacterial growth rates by dissolved organic carbon and temperature in the equatorial Pacific Ocean. Microb. Ecol., 33, 11-20.
29. Massana, R. and Jürgens, K. (2003) Composition and population dynamics of planktonic bacteria and bacterivorous flagellates in seawater chemostat cultures. Aquat. Microb. Ecol., 32, 11-22.
30. Massana, R., Gasol, J. M., Bjørsen, P. K. et al. (1997) Measurement of bacterial size via image analysis of epifluorescence preparations: description of an inexpensive system and solutions to some of the most common problems. Sci. Mar., 61, 397-407.
31. Nagata, T. (2000) Production mechanisms of dissolved organic matter. In Kirchman, D. (ed.), Microbial Ecology of the Oceans. Wiley-Liss, New York.
32. Norland, S. (1993) The relationship between biomass and volume of bacteria. In Kemp, P. F., Sherr, B. F., Sherr, E. B. et al. (eds), Handbook of Methods in Aquatic Microbial Ecology. Lewis Publishers, Boston, pp. 303-307.
33. Oda, Y., Slagman, S.-J., Meijer, W. G. et al. (2000) Influence of growth rate and starvation on fluorescent in situ hybridization of Rhodopseudomonas palustris. FEMS Microbiol. Ecol., 32, 205-213.
34. Pernthaler, J. (2005) Predation on prokaryotes in the water column and its ecological implications. Nat. Rev. Microbiol., 3, 537-546.
35. Pinhassi, J. and Berman, T. (2003) Differential growth response of colony-forming alpha- and gamma-Proteobacteria in dilution culture and nutrient addition experiments in Lake Kinneret, eastern Mediterranean and Gulf of Eilat. Appl. Environ. Microbiol., 69, 199-211.
36. Porter, K. G. and Feig, Y. S. (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr., 25, 943-948.
37. Rappé, M. S., Gordon, D. A., Vergin, K. L. et al. (1999) Phylogeny of Actinobacteria small subunit (SSU) rRNA gene clones recovered from marine bacterioplankton. Syst. Appl. Microbiol., 22, 106-112.
38. Sekar, R., Pernthaler, A., Pernthaler, J. et al. (2003) An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization. Appl. Environ. Microbiol., 69, 2928-2935.
39. Sherr, E. B. and Sherr, B. F. (2002) Significant of predation by protists in aquatic microbial food webs.. Antonie Van Leewenhoek Int. J. Gen. Mol. Microbiol., 81, 293-308.
40. Shiah, F. K. and Ducklow, H. W. (1995) Regulation of bacterial abundance and production by substrate supply and bacterivory. A mesocosm study. Microb. Ecol., 30, 239-255.
41. S¡imek, K., Vrba, J., Pernthaler, J. et al. (1997) Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Appl. Environ. Microbiol., 63, 587-595.
42. S¡imek, K., Pernthaler, J., Weinbauer, M. G. et al. (2001) Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic resevoir. Appl. Environ. Microbiol., 67, 2723-2733.
43. S¡imek, K., Horn¡ák, K., Jezbera, J. et al. (2005) Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of b-Proteobacteria, an abundant group in bacterioplankton of a freshwater reservoir. Appl. Environ. Microbiol., 71, 2381-2390.
44. S¡imek, K., Weinbauer, M. G., Horn¡ák, K. et al. (2007) Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environ. Microbiol, 9, 789-800.
45. Simon, M., Alldredge, A. L. and Azam, F. (1990) Bacterial carbon dynamics on marine snow. Mar. Ecol. Prog. Ser., 65, 205-211.
46. Simon, M., Grossart, H. P., Schweitzer, B. et al. (2002) Microbial ecology of organic aggregates in aquatic ecosystems. Aquat. Microb. Ecol., 28, 175-211.
47. Spiglazov, L. P., Drucker, V. V. and Ahn, T. S. (2004) Bacterial aggregates formation after addition of glucose in lake Baikal water. J. Microbiol., 42, 357-360.
48. Suzuki, M. T., Preston, C. M., Chavez, F. P. et al. (2001) Quantitative mapping of bacterioplankton populations in seawater: field tests across an upwelling plume in the Monterey Bay. Aquat. Microb. Ecol., 24, 117-127.
49. Turley, C. M., Børsheim, K., Iriberri, J. et al. (1996) The estimation of bacterial biomass in Mediterranean seawater. Handbook of Method Protocols for the Quality Assurance Pilot Study of Selected Methods used in the Mediterranean Targeted Project, pp. 27-34.
50. Unanue, M. A. (1992) Bacterias de vida libre y adheridas a partículas en sistemas acuáticos. PhD Thesis. Universidad del País Vasco, Spain.
51. Velji, M. J. and Albright, L. J. (1986) Microscopic enumeration of attached marine bacteria of seawater, marine sediment, fecal matter, and kelp blade samples following pyrophosphate and ultrasound treatments. Can. J. Microbiol., 32, 121-126.
52. Vrba, J., S¡imek, J., Pernthaler, J. et al. (1996) Evaluation of extracellular, high-affinity b-N-acetylglucosaminidase measurements from freshwater lakes: an enzyme assay to estimate protistan grazing on bacteria and picocyanobacteria. Microb. Ecol., 32, 81-97.
53. Yokokawa, T., Nagata, T., Cottrell, M. T. et al. (2004) Growth rate of the major phylogenetic bacterial groups in the Delaware estuary. Limnol. Oceanogr., 49, 1620-1629.