메뉴 건너뛰기




Volumn 26, Issue 3, 2009, Pages 255-265

Molecular diversity of visual pigments in Stomatopoda (Crustacea)

Author keywords

Molecular evolution; Opsin; Tomatopoda; Visual pigment

Indexed keywords

COMPLEMENTARY DNA; G PROTEIN COUPLED RECEPTOR; OPSIN; RNA; VISUAL PIGMENT;

EID: 70349895400     PISSN: 09525238     EISSN: 14698714     Source Type: Journal    
DOI: 10.1017/S0952523809090129     Document Type: Article
Times cited : (55)

References (65)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • Abascal, F., Zardoya, R. & Posada, D. (2005). ProtTest: Selection of best-fit models of protein evolution. Bioinformatics 21, 2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 3
    • 0029818551 scopus 로고    scopus 로고
    • Structural features and light-dependent changes in the cytoplasmic interhelical EF loop region of rhodopsin: A site-directed spin-labeling study
    • Altenbach, C.,Yang, K., Farrens, D.L., Farahbakhsh, Z.T., Khorana, H.G. & Hubbell, W.L. (1996). Structural features and light-dependent changes in the cytoplasmic interhelical EF loop region of rhodopsin: A site-directed spin-labeling study. Biochemistry 35, 12470-12478.
    • (1996) Biochemistry , vol.35 , pp. 12470-12478
    • Altenbach, C.1    Yang, K.2    Farrens, D.L.3    Farahbakhsh, Z.T.4    Khorana, H.G.5    Hubbell, W.L.6
  • 4
    • 0035747672 scopus 로고    scopus 로고
    • Enhancement of protein modeling by human intervention in applying the automatic programs 3D-Jigsaw and 3D-Pssm
    • Bates, P.A., Kelley, L.A., MacCallum, R.M. & Sternberg, M.J.E. (2001). Enhancement of protein modeling by human intervention in applying the automatic programs 3D-Jigsaw and 3D-Pssm. Proteins: Structure, Function and Genetics 45(Suppl. 5), 39-46.
    • (2001) Proteins: Structure, Function and Genetics , vol.45 , Issue.SUPPL. 5 , pp. 39-46
    • Bates, P.A.1    Kelley, L.A.2    MacCallum, R.M.3    Sternberg, M.J.E.4
  • 5
    • 0032606088 scopus 로고    scopus 로고
    • Model building by comparison at Casp3: Using expert knowledge and computer automation
    • Bates, P.A. &Sternberg, M.J.E. (1999). Model building by comparison at Casp3: Using expert knowledge and computer automation. Proteins: Structure, Function and Genetics 37(Suppl. 3), 47-54.
    • (1999) Proteins: Structure, Function and Genetics , vol.37 , Issue.SUPPL. 3 , pp. 47-54
    • Bates, P.A.1    Sternberg, M.J.E.2
  • 6
    • 0028233906 scopus 로고
    • Insertional mutagenesis as a probe of rhodopsin's topography, stability, and activity
    • Borjigin, J. & Nathans, J. (1994). Insertional mutagenesis as a probe of rhodopsin's topography, stability, and activity. The Journal of Biological Chemistry 269, 14715-14722.
    • (1994) The Journal of Biological Chemistry , vol.269 , pp. 14715-14722
    • Borjigin, J.1    Nathans, J.2
  • 7
    • 33748427108 scopus 로고    scopus 로고
    • Evolution of vertebrate visual pigments
    • Bowmaker, J.K. & Hunt, D.M. (2006). Evolution of vertebrate visual pigments. Current Biology 16, R484-R489.
    • (2006) Current Biology , vol.16
    • Bowmaker, J.K.1    Hunt, D.M.2
  • 8
    • 0031135337 scopus 로고    scopus 로고
    • Recombinant DNA sequences generated by PCR amplification
    • Bradley, R.D. & Hillis, D.M. (1997). Recombinant DNA sequences generated by PCR amplification. Molecular Biology and Evolution 14, 592-593.
    • (1997) Molecular Biology and Evolution , vol.14 , pp. 592-593
    • Bradley, R.D.1    Hillis, D.M.2
  • 9
    • 0035211857 scopus 로고    scopus 로고
    • Functional diversification of lepidopteran opsins following gene duplication
    • Briscoe, A.D. (2001). Functional diversification of lepidopteran opsins following gene duplication. Molecular Biology and Evolution 18, 2270-2279.
    • (2001) Molecular Biology and Evolution , vol.18 , pp. 2270-2279
    • Briscoe, A.D.1
  • 12
    • 23944483942 scopus 로고    scopus 로고
    • Rod and cone opsin families differ in spectral tuning domains but not signal transducing domains as judged by saturated evolutionary trace analysis
    • Carleton, K.L., Spady, T.C. & Cote, R.H. (2005). Rod and cone opsin families differ in spectral tuning domains but not signal transducing domains as judged by saturated evolutionary trace analysis. Journal of Molecular Evolution 61, 75-89.
    • (2005) Journal of Molecular Evolution , vol.61 , pp. 75-89
    • Carleton, K.L.1    Spady, T.C.2    Cote, R.H.3
  • 13
    • 0033666890 scopus 로고    scopus 로고
    • Eye Design and Color Signaling in a Stomatopod Crustacean Gonodactylus smithii
    • Chiao, C.C., Cronin, T.W. & Marshall, N.J. (2000). Eye Design and Color Signaling in a Stomatopod Crustacean Gonodactylus smithii. Brain, Behavior and Evolution 56, 107-122.
    • (2000) Brain, Behavior and Evolution , vol.56 , pp. 107-122
    • Chiao, C.C.1    Cronin, T.W.2    Marshall, N.J.3
  • 14
    • 0036678447 scopus 로고    scopus 로고
    • Domain fishing: A first step in protein comparative modelling
    • Contreras-Moreira, B. & Bates, P.A. (2002). Domain fishing: A first step in protein comparative modelling. Bioinformatics 18, 1141-1142.
    • (2002) Bioinformatics , vol.18 , pp. 1141-1142
    • Contreras-Moreira, B.1    Bates, P.A.2
  • 15
    • 0036796409 scopus 로고    scopus 로고
    • The molecular mechanism for the spectral shifts between vertebrate ultraviolet-and violet-sensitive cone visual pigments
    • Cowing, J.A., Poopalasundaram, S., Wilkie, S.E., Robinson, P.R., Bowmaker, J.K. & Hunt, D.M. (2002). The molecular mechanism for the spectral shifts between vertebrate ultraviolet-and violet-sensitive cone visual pigments. Biochemical Journal 367, 129-135.
    • (2002) Biochemical Journal , vol.367 , pp. 129-135
    • Cowing, J.A.1    Poopalasundaram, S.2    Wilkie, S.E.3    Robinson, P.R.4    Bowmaker, J.K.5    Hunt, D.M.6
  • 16
    • 0039237428 scopus 로고
    • The visual pigment of a stomatopod crustacean, Squilla empusa
    • Cronin, T.W. (1985). The visual pigment of a stomatopod crustacean, Squilla empusa. Journal of Comparative Physiology A 156, 679-687.
    • (1985) Journal of Comparative Physiology A , vol.156 , pp. 679-687
    • Cronin, T.W.1
  • 17
    • 0001187010 scopus 로고
    • A retina with at least ten spectral types of photoreceptors in a mantis shrimp
    • Cronin, T.W.&Marshall, N.J. (1989a). A retina with at least ten spectral types of photoreceptors in a mantis shrimp. Nature 339, 137-140.
    • (1989) Nature , vol.339 , pp. 137-140
    • Cronin, T.W.1    Marshall, N.J.2
  • 21
    • 0029840524 scopus 로고    scopus 로고
    • Visual pigment diversity in two genera of mantis shrimps implies rapied evolution (Crustacea: Stomatopoda)
    • Cronin, T.W., Marshall, N.J. & Caldwell, R.L. (1996). Visual pigment diversity in two genera of mantis shrimps implies rapied evolution (Crustacea: Stomatopoda). Journal of Comparative Physiology A 179, 371-384.
    • (1996) Journal of Comparative Physiology A , vol.179 , pp. 371-384
    • Cronin, T.W.1    Marshall, N.J.2    Caldwell, R.L.3
  • 22
    • 23044534543 scopus 로고    scopus 로고
    • Ontogeny of vision in marine crustaceans
    • Cronin, T.W. & Jinks, R.N. (2001). Ontogeny of Vision in Marine Crustaceans. American Zoologist 41, 1098-1107.
    • (2001) American Zoologist , vol.41 , pp. 1098-1107
    • Cronin, T.W.1    Jinks, R.N.2
  • 23
    • 1542730176 scopus 로고    scopus 로고
    • The unique visual world of mantis shrimp
    • ed. Prete, F., Cambridge, MA: MIT Press
    • Cronin, T.W.&Marshall, N.J. (2004). The unique visual world of mantis shrimp. In Complex Worlds From Simple Nervous Systems, ed. Prete, F., pp. 239-268. Cambridge, MA: MIT Press.
    • (2004) Complex Worlds from Simple Nervous Systems , pp. 239-268
    • Cronin, T.W.1    Marshall, N.J.2
  • 25
    • 14644430471 scopus 로고    scopus 로고
    • Probcons: Probabilistic consistency-based multiple sequence alignment
    • Do, C.B., Mahabhashyam, M.S.P, Brudno, M.&Batzoglou, S. (2005). Probcons: Probabilistic consistency-based multiple sequence alignment. Genome Research 15, 330-340.
    • (2005) Genome Research , vol.15 , pp. 330-340
    • Do, C.B.1    Mahabhashyam, M.S.P.2    Brudno, M.3    Batzoglou, S.4
  • 26
    • 0037188415 scopus 로고    scopus 로고
    • Spectral tuning in the mammalian shortwavelength sensitive cone pigments
    • Fasick, J.I., Applebury, M.L. & Oprian, D.D. (2002). Spectral tuning in the mammalian shortwavelength sensitive cone pigments. Biochemistry 41, 6860-6865.
    • (2002) Biochemistry , vol.41 , pp. 6860-6865
    • Fasick, J.I.1    Applebury, M.L.2    Oprian, D.D.3
  • 27
    • 64249126476 scopus 로고    scopus 로고
    • Spectral sensitivity, visual pigments and screening pigments in two life history stages of the ontogenetic migrator Gnathophausia ingens
    • doi: 10.1017/Soo25315408002440
    • Frank, T.M., Porter, M.L. & Cronin, T.W. (2009). Spectral sensitivity, visual pigments and screening pigments in two life history stages of the ontogenetic migrator Gnathophausia ingens. Journal of the Marine Biological Association of the United Kingdom, 89, 119-129 doi: 10.1017/Soo25315408002440.
    • (2009) Journal of the Marine Biological Association of the United Kingdom , vol.89 , pp. 119-129
    • Frank, T.M.1    Porter, M.L.2    Cronin, T.W.3
  • 29
    • 0026780339 scopus 로고
    • Structure and function in rhodopsin. Studies of the interaction between the rhodopsin cytoplasmic domain and transducin
    • Franke, R.R., Sakmar, T.P., Graham, R.M. & Khorana, H.G. (1992). Structure and function in rhodopsin. Studies of the interaction between the rhodopsin cytoplasmic domain and transducin. The Journal of Biological Chemistry 267, 14767-14774.
    • (1992) The Journal of Biological Chemistry , vol.267 , pp. 14767-14774
    • Franke, R.R.1    Sakmar, T.P.2    Graham, R.M.3    Khorana, H.G.4
  • 31
    • 34548400220 scopus 로고    scopus 로고
    • Gene duplication is an evolutionary mechanism for expanding spectral diversity in the long-wavelength photopigments of butterflies
    • Frentiu, F.D., Bernard, G.D., Sison-Mangus, M.P., Brower, A.V. & Briscoe, A.D. (2007b). Gene duplication is an evolutionary mechanism for expanding spectral diversity in the long-wavelength photopigments of butterflies. Molecular Biology and Evolution 24, 2016-2028.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 2016-2028
    • Frentiu, F.D.1    Bernard, G.D.2    Sison-Mangus, M.P.3    Brower, A.V.4    Briscoe, A.D.5
  • 32
    • 0031473847 scopus 로고    scopus 로고
    • Swiss-model and the Swiss-Pdb Viewer: An environment for comparative protein modeling
    • Guex, N.&Peitsch, M.C. (1997). Swiss-model and the Swiss-Pdb Viewer: An environment for comparative protein modeling. Electrophoresis 18, 2714-2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 33
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52, 696-704.
    • (2003) Systematic Biology , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 34
    • 23144433822 scopus 로고    scopus 로고
    • Phyml online-A web server for fast maximum likelihood-based phylogenetic inference
    • Guindon, S., Lethiec, F., Duroux, P. & Gascuel, O. (2005). Phyml online-A web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Research 33, W557-W559.
    • (2005) Nucleic Acids Research , vol.33
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 36
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis, D.M. & Bull, J.J. (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42, 182-192.
    • (1993) Systematic Biology , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 37
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
    • Huber, T., Faulkner, G. & Hugenholtz, P. (2004). Bellerophon: A program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20, 2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 38
    • 0035912892 scopus 로고    scopus 로고
    • Engineering a functional bluewavelength- shifted rhodopsin mutant
    • Janz, J.M. & Farrens, D.L. (2001). Engineering a functional bluewavelength- shifted rhodopsin mutant. Biochemistry 40, 7219-7227.
    • (2001) Biochemistry , vol.40 , pp. 7219-7227
    • Janz, J.M.1    Farrens, D.L.2
  • 41
    • 0035909103 scopus 로고    scopus 로고
    • Thermal destabilization of rhodopsin and opsin by proteolytic cleavage in bovine rod outer segment disk membranes
    • Landin, J.S., Katragadda, M. & Albert, A.D. (2001). Thermal destabilization of rhodopsin and opsin by proteolytic cleavage in bovine rod outer segment disk membranes. Biochemistry 40, 11176-11183.
    • (2001) Biochemistry , vol.40 , pp. 11176-11183
    • Landin, J.S.1    Katragadda, M.2    Albert, A.D.3
  • 43
    • 0029913807 scopus 로고    scopus 로고
    • An evolutionary trace method defines binding surfaces common to protein families
    • Lichtarge, O., Bourne, H.R. & Cohen, F.E. (1996). An evolutionary trace method defines binding surfaces common to protein families. Journal of Molecular Biology 257, 342-358.
    • (1996) Journal of Molecular Biology , vol.257 , pp. 342-358
    • Lichtarge, O.1    Bourne, H.R.2    Cohen, F.E.3
  • 44
    • 1542379652 scopus 로고    scopus 로고
    • Evolutionary trace of G protein-coupled receptors reveals clusters of residues that determine global and classspecific functions
    • Madabushi, S., Gross, A.K., Philippi, A., Meng, E.C., Wensel, T.G. & Lichtarge, O. (2004). Evolutionary trace of G protein-coupled receptors reveals clusters of residues that determine global and classspecific functions. The Journal of Biological Chemistry 279, 8126-8132.
    • (2004) The Journal of Biological Chemistry , vol.279 , pp. 8126-8132
    • Madabushi, S.1    Gross, A.K.2    Philippi, A.3    Meng, E.C.4    Wensel, T.G.5    Lichtarge, O.6
  • 45
    • 0027716516 scopus 로고
    • The molecular basis of a spectral shift in the rhodopsins of two species of squid from different photic environments
    • Morris, A., Bowmaker, J.K.&Hunt, D.M. (1993). The molecular basis of a spectral shift in the rhodopsins of two species of squid from different photic environments. Proceedings of the Royal Society B: Biological Sciences 254, 233-240.
    • (1993) Proceedings of the Royal Society B: Biological Sciences , vol.254 , pp. 233-240
    • Morris, A.1    Bowmaker, J.K.2    Hunt, D.M.3
  • 46
    • 43749109187 scopus 로고    scopus 로고
    • Crystal structure of squid rhodopsin
    • Murakami, M. & Kouyama, T. (2008). Crystal structure of squid rhodopsin. Nature 453, 363-367.
    • (2008) Nature , vol.453 , pp. 363-367
    • Murakami, M.1    Kouyama, T.2
  • 47
    • 0037076084 scopus 로고    scopus 로고
    • Isomer-specific interaction of the retinal chromophore with threonine- 118 in rhodopsin
    • Nagata, T., Oura, T., Terakita, A., Kandori, H.&Shichida, Y. (2002). Isomer-Specific Interaction of the Retinal Chromophore with Threonine- 118 in Rhodopsin. Journal of Physical Chemistry A 106, 1969-1975.
    • (2002) Journal of Physical Chemistry A , vol.106 , pp. 1969-1975
    • Nagata, T.1    Oura, T.2    Terakita, A.3    Kandori, H.4    Shichida, Y.5
  • 48
    • 0025162902 scopus 로고
    • Determinants of visual pigment absorbance: Identification of the retinyidene Schiff's base counterion in bovine rhodopsin
    • Nathans, J. (1990). Determinants of visual pigment absorbance: identification of the retinyidene Schiff's base counterion in bovine rhodopsin. Biochemistry 29, 9746-9752.
    • (1990) Biochemistry , vol.29 , pp. 9746-9752
    • Nathans, J.1
  • 50
    • 4344633861 scopus 로고    scopus 로고
    • Differential expression of duplicated opsin genes in two eye types of ostracod crustaceans
    • Oakley, T.H. & Huber, D.R. (2004). Differential expression of duplicated opsin genes in two eye types of ostracod crustaceans. Journal of Molecular Evolution 59, 239-249.
    • (2004) Journal of Molecular Evolution , vol.59 , pp. 239-249
    • Oakley, T.H.1    Huber, D.R.2
  • 52
    • 33845906614 scopus 로고    scopus 로고
    • Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins
    • Porter, M.L., Cronin, T.W., McClellan, D.A. & Crandall, K.A. (2007). Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins. Molecular Biology and Evolution 24, 253-268.
    • (2007) Molecular Biology and Evolution , vol.24 , pp. 253-268
    • Porter, M.L.1    Cronin, T.W.2    McClellan, D.A.3    Crandall, K.A.4
  • 54
    • 0033597777 scopus 로고    scopus 로고
    • Folding and assembly in rhodopsin: Effect of mutations in the sixth transmembrane helix on the conformation of the third cytoplasmic loop
    • Ridge, K.D., Ngo, T., Lee, S.S.J. & Abdulaev, N.G. (1999). Folding and assembly in rhodopsin: Effect of mutations in the sixth transmembrane helix on the conformation of the third cytoplasmic loop. The Journal of Biological Chemistry 274, 21437-21442.
    • (1999) The Journal of Biological Chemistry , vol.274 , pp. 21437-21442
    • Ridge, K.D.1    Ngo, T.2    Lee, S.S.J.3    Abdulaev, N.G.4
  • 56
    • 15444362001 scopus 로고    scopus 로고
    • Introducing Dotur, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P.D. & Handelsman, J. (2005). Introducing Dotur, a computer program for defining operational taxonomic units and estimating species richness. Applied and Environmental Microbiology 71, 1501-1506.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 57
    • 0028900858 scopus 로고
    • Rhodopsin mutants discriminate sites important for the activation of rhodopsin kinase and G (t)
    • Shi, W., Osawa, S., Dickerson, C.D. & Weiss, E.R. (1995). Rhodopsin mutants discriminate sites important for the activation of rhodopsin kinase and G (t). The Journal of Biological Chemistry 270, 2112.
    • (1995) The Journal of Biological Chemistry , vol.270 , pp. 2112
    • Shi, W.1    Osawa, S.2    Dickerson, C.D.3    Weiss, E.R.4
  • 59
    • 0012394062 scopus 로고    scopus 로고
    • Molecular basis of spectral tuning in the newt short wavelength sensitive visual pigment
    • Takahashi, Y.&Ebrey, T.G. (2003). Molecular basis of spectral tuning in the newt short wavelength sensitive visual pigment. Biochemistry 42, 6025-6034.
    • (2003) Biochemistry , vol.42 , pp. 6025-6034
    • Takahashi, Y.1    Ebrey, T.G.2
  • 63
    • 0029818639 scopus 로고    scopus 로고
    • Structure and function in rhodopsin: Single cysteine substitution mutants in the cytoplasmic interhelical E-F loop region show positionspecific effects in transducin activation
    • Yang, K., Farrens, D.L., Hubbell, W.L. & Khorana, H.G. (1996). Structure and function in rhodopsin: Single cysteine substitution mutants in the cytoplasmic interhelical E-F loop region show positionspecific effects in transducin activation. Biochemistry 35, 12464-12469.
    • (1996) Biochemistry , vol.35 , pp. 12464-12469
    • Yang, K.1    Farrens, D.L.2    Hubbell, W.L.3    Khorana, H.G.4
  • 64
    • 0034002482 scopus 로고    scopus 로고
    • Molecular evolution of vertebrate visual pigments
    • Yokoyama, S. (2000). Molecular evolution of vertebrate visual pigments. Progress in Retinal and Eye Research 19, 385-419.
    • (2000) Progress in Retinal and Eye Research , vol.19 , pp. 385-419
    • Yokoyama, S.1
  • 65
    • 0031727088 scopus 로고    scopus 로고
    • PCR amplification of murine immunoglobulin germline v genes: Strategies for minimization of recombination artifacts
    • Zylstra, P., Rothenfluh, H.S., Weiller, G.F., Blanden, R.V. & Steele, E.J. (1998). PCR amplification of murine immunoglobulin germline V genes: Strategies for minimization of recombination artifacts. Immunology and Cell Biology 76, 395-405.
    • (1998) Immunology and Cell Biology , vol.76 , pp. 395-405
    • Zylstra, P.1    Rothenfluh, H.S.2    Weiller, G.F.3    Blanden, R.V.4    Steele, E.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.