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Volumn 9, Issue , 2009, Pages

Transcriptome and proteome analyses of adaptive responses to methyl methanesulfonate in Escherichia coli K-12 and ada mutant strains

Author keywords

[No Author keywords available]

Indexed keywords

ADA PROTEIN; BACTERIAL PROTEIN; MESYLIC ACID METHYL ESTER; PROTEOME; TRANSCRIPTOME; UNCLASSIFIED DRUG; BACTERIAL DNA; ESCHERICHIA COLI PROTEIN;

EID: 70349780868     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-9-186     Document Type: Article
Times cited : (9)

References (41)
  • 1
    • 0031426032 scopus 로고    scopus 로고
    • Nitrosated peptides and polyamines as endogenous mutagens in O6-alkylguanine-DNA alkyltransferase deficient cells
    • 10.1093/carcin/18.8.1561. 9276631
    • Nitrosated peptides and polyamines as endogenous mutagens in O6-alkylguanine-DNA alkyltransferase deficient cells. B Sedgwick, Carcinogenesis 1997 18 1561 1567 10.1093/carcin/18.8.1561 9276631
    • (1997) Carcinogenesis , vol.18 , pp. 1561-1567
    • Sedgwick, B.1
  • 2
    • 0029810398 scopus 로고    scopus 로고
    • Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli
    • 8752326
    • Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli. P Taverna B Sedgwick, J Bacteriol 1996 178 5105 5111 8752326
    • (1996) J Bacteriol , vol.178 , pp. 5105-5111
    • Taverna, P.1    Sedgwick, B.2
  • 3
    • 0029762815 scopus 로고    scopus 로고
    • DNA repair: Enzymatic mechanisms and relevance to drug response
    • 10.1093/jnci/88.19.1346. 8827012
    • DNA repair: enzymatic mechanisms and relevance to drug response. SG Chaney A Sancar, J Natl Cancer Inst 1996 88 1346 1360 10.1093/jnci/88.19.1346 8827012
    • (1996) J Natl Cancer Inst , vol.88 , pp. 1346-1360
    • Chaney, S.G.1    Sancar, A.2
  • 4
    • 0036519363 scopus 로고    scopus 로고
    • DNA and its associated processes as targets for cancer therapy
    • 10.1038/nrc749. 11990855
    • DNA and its associated processes as targets for cancer therapy. LH Hurley, Nat Rev Cancer 2002 2 188 200 10.1038/nrc749 11990855
    • (2002) Nat Rev Cancer , vol.2 , pp. 188-200
    • Hurley, L.H.1
  • 6
    • 0037115934 scopus 로고    scopus 로고
    • Recent progress on the Ada response for inducible repair of DNA alkylation damage
    • 10.1038/sj.onc.1205998. 12483506
    • Recent progress on the Ada response for inducible repair of DNA alkylation damage. B Sedgwick T Lindahl, Oncogene 2002 21 8886 8894 10.1038/sj.onc.1205998 12483506
    • (2002) Oncogene , vol.21 , pp. 8886-8894
    • Sedgwick, B.1    Lindahl, T.2
  • 7
    • 0017395439 scopus 로고
    • A new pathway for DNA repair in Escherichia coli
    • 10.1038/267281a0. 325420
    • A new pathway for DNA repair in Escherichia coli. L Samson J Cairns, Nature 1977 267 281 283 10.1038/267281a0 325420
    • (1977) Nature , vol.267 , pp. 281-283
    • Samson, L.1    Cairns, J.2
  • 8
    • 0018725970 scopus 로고
    • Isolation and characterization of Escherichia coli K-12 mutants unable to induce the adaptive response to simple alkylating agents
    • 383692
    • Isolation and characterization of Escherichia coli K-12 mutants unable to induce the adaptive response to simple alkylating agents. P Jeggo, J Bacteriol 1979 139 783 791 383692
    • (1979) J Bacteriol , vol.139 , pp. 783-791
    • Jeggo, P.1
  • 9
    • 0023919219 scopus 로고
    • Regulation and expression of the adaptive response to alkylating agents
    • 10.1146/annurev.bi.57.070188.001025. 3052269
    • Regulation and expression of the adaptive response to alkylating agents. T Lindahl B Sedgwick M Sekiguchi Y Nakabeppu, Annu Rev Biochem 1988 57 133 157 10.1146/annurev.bi.57.070188.001025 3052269
    • (1988) Annu Rev Biochem , vol.57 , pp. 133-157
    • Lindahl, T.1    Sedgwick, B.2    Sekiguchi, M.3    Nakabeppu, Y.4
  • 10
    • 0034664066 scopus 로고    scopus 로고
    • Defective processing of methylated single-stranded DNA by E. coli AlkB mutants
    • 10950872
    • Defective processing of methylated single-stranded DNA by E. coli AlkB mutants. S Dinglay SC Trewick T Lindahl B Sedgwick, Genes Dev 2000 14 2097 2105 10950872
    • (2000) Genes Dev , vol.14 , pp. 2097-2105
    • Dinglay, S.1    Trewick, S.C.2    Lindahl, T.3    Sedgwick, B.4
  • 11
    • 0017655895 scopus 로고
    • An adaptive response of E. coli to low levels of alkylating agent: Comparison with previously characterised DNA repair pathways
    • 10.1007/BF00268680. 414071
    • An adaptive response of E. coli to low levels of alkylating agent: comparison with previously characterised DNA repair pathways. P Jeggo TM Defais L Samson P Schendel, Mol Gen Genet 1977 157 1 9 10.1007/BF00268680 414071
    • (1977) Mol Gen Genet , vol.157 , pp. 1-9
    • Jeggo, P.1    Defais, T.M.2    Samson, L.3    Schendel, P.4
  • 12
    • 0021994197 scopus 로고
    • Induction and autoregulation of ada, a positively acting element regulating the response of Escherichia coli K-12 to methylating agents
    • 2982792
    • Induction and autoregulation of ada, a positively acting element regulating the response of Escherichia coli K-12 to methylating agents. PK Lemotte GC Walker, J Bacteriol 1985 161 888 895 2982792
    • (1985) J Bacteriol , vol.161 , pp. 888-895
    • Lemotte, P.K.1    Walker, G.C.2
  • 13
    • 0023009336 scopus 로고
    • Regulatory mechanisms for induction of synthesis of repair enzymes in response to alkylating agents: Ada protein acts as a transcriptional regulator
    • 10.1073/pnas.83.17.6297. 3529081
    • Regulatory mechanisms for induction of synthesis of repair enzymes in response to alkylating agents: ada protein acts as a transcriptional regulator. Y Nakabeppu M Sekiguchi, Proc Natl Acad Sci USA 1986 83 6297 301 10.1073/pnas.83.17.6297 3529081
    • (1986) Proc Natl Acad Sci USA , vol.83 , pp. 6297-301
    • Nakabeppu, Y.1    Sekiguchi, M.2
  • 14
    • 0024292611 scopus 로고
    • Functional sites of the Ada regulatory protein of Escherichia coli. Analysis by amino acid substitutions
    • 10.1016/0022-2836(88)90137-4. 3047400
    • Functional sites of the Ada regulatory protein of Escherichia coli. Analysis by amino acid substitutions. K Takano Y Nakabeppu M Sekiguchi, J Mol Biol 1988 201 261 271 10.1016/0022-2836(88)90137-4 3047400
    • (1988) J Mol Biol , vol.201 , pp. 261-271
    • Takano, K.1    Nakabeppu, Y.2    Sekiguchi, M.3
  • 15
    • 33644527950 scopus 로고    scopus 로고
    • The model organism as a system: Integrating 'omics' data sets
    • 10.1038/nrm1857. 16496022
    • The model organism as a system: integrating 'omics' data sets. AR Joyce B Palsson, Nat Rev Mol Cell Biol 2006 7 198 210 10.1038/nrm1857 16496022
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 198-210
    • Joyce, A.R.1    Palsson, B.2
  • 17
    • 0037473189 scopus 로고    scopus 로고
    • Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture
    • 10.1002/bit.10626. 12557308
    • Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture. SH Yoon MJ Han SY Lee KJ Jeong JS Yoo, Biotechnol Bioeng 2003 81 753 767 10.1002/bit.10626 12557308
    • (2003) Biotechnol Bioeng , vol.81 , pp. 753-767
    • Yoon, S.H.1    Han, M.J.2    Lee, S.Y.3    Jeong, K.J.4    Yoo, J.S.5
  • 18
    • 33947366485 scopus 로고    scopus 로고
    • The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid
    • 10.1002/pmic.200600706. 17295427
    • The proteome and transcriptome analysis of Bacillus subtilis in response to salicylic acid. NV Duy U Mäder NP Tran JF Cavin LT Tam D Albrecht M Hecker H Antelmann, Proteomics 2007 7 698 710 10.1002/pmic.200600706 17295427
    • (2007) Proteomics , vol.7 , pp. 698-710
    • Duy, N.V.1    Mäder, U.2    Tran, N.P.3    Cavin, J.F.4    Tam, L.T.5    Albrecht, D.6    Hecker, M.7    Antelmann, H.8
  • 19
    • 34248630834 scopus 로고    scopus 로고
    • Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in Bacillus subtilis
    • 10.1002/pmic.200700008. 17407181
    • Transcriptome and proteome analyses in response to 2-methylhydroquinone and 6-brom-2-vinyl-chroman-4-on reveal different degradation systems involved in the catabolism of aromatic compounds in Bacillus subtilis. VD Nguyen C Wolf U Mäder M Lalk P Langer U Lindequist M Hecker H Antelmann, Proteomics 2007 7 1391 1408 10.1002/pmic.200700008 17407181
    • (2007) Proteomics , vol.7 , pp. 1391-1408
    • Nguyen, V.D.1    Wolf, C.2    Mäder, U.3    Lalk, M.4    Langer, P.5    Lindequist, U.6    Hecker, M.7    Antelmann, H.8
  • 20
    • 0032704609 scopus 로고    scopus 로고
    • Expression of the Escherichia coli ada regulon in stationary phase: Evidence for rpoS-dependent negative regulation of alkA transcription
    • 10542189
    • Expression of the Escherichia coli ada regulon in stationary phase: evidence for rpoS-dependent negative regulation of alkA transcription. P Landini SJ Busby, J Bacteriol 1999 181 6836 6839 10542189
    • (1999) J Bacteriol , vol.181 , pp. 6836-6839
    • Landini, P.1    Busby, S.J.2
  • 21
    • 0034462430 scopus 로고    scopus 로고
    • Regulatory responses of the adaptive response to alkylation damage: A simple regulon with complex regulatory features
    • 10.1128/JB.182.23.6543-6549.2000. 11073893
    • Regulatory responses of the adaptive response to alkylation damage: a simple regulon with complex regulatory features. P Landini MR Volkert, J Bacteriol 2000 182 6543 6549 10.1128/JB.182.23.6543-6549.2000 11073893
    • (2000) J Bacteriol , vol.182 , pp. 6543-6549
    • Landini, P.1    Volkert, M.R.2
  • 23
    • 0036714331 scopus 로고    scopus 로고
    • S (RpoS) subunit of RNA polymerase
    • 10.1128/MMBR.66.3.373-395.2002. 12208995
    • S (RpoS) subunit of RNA polymerase. R Hengge-Aronis, Microbiol Mol Biol Rev 2002 66 373 395 10.1128/MMBR.66.3.373-395.2002 12208995
    • (2002) Microbiol Mol Biol Rev , vol.66 , pp. 373-395
    • Hengge-Aronis, R.1
  • 25
    • 0034444676 scopus 로고    scopus 로고
    • Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli
    • 10.1128/MMBR.64.4.694-708.2000. 11104815
    • Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli. GS Chilcott KT Hughes, Microbiol Mol Biol Rev 2000 64 694 708 10.1128/MMBR.64.4.694-708.2000 11104815
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 694-708
    • Chilcott, G.S.1    Hughes, K.T.2
  • 26
    • 0025830353 scopus 로고
    • Reconstitution of the bacterial chemotaxis signal transduction system from purified components
    • 1851755
    • Reconstitution of the bacterial chemotaxis signal transduction system from purified components. EG Ninfa A Stock S Mowbray J Stock, J Biol Chem 1991 266 9764 9770 1851755
    • (1991) J Biol Chem , vol.266 , pp. 9764-9770
    • Ninfa, E.G.1    Stock, A.2    Mowbray, S.3    Stock, J.4
  • 27
    • 40449091818 scopus 로고    scopus 로고
    • The Rcs phosphorelay is a cell envelope stress response activated by peptidoglycan stress and contributes to intrinsic antibiotic resistance
    • 10.1128/JB.01740-07. 18192383
    • The Rcs phosphorelay is a cell envelope stress response activated by peptidoglycan stress and contributes to intrinsic antibiotic resistance. ME Laubacher SE Ades, J Bacteriol 2008 190 2065 2074 10.1128/JB.01740-07 18192383
    • (2008) J Bacteriol , vol.190 , pp. 2065-2074
    • Laubacher, M.E.1    Ades, S.E.2
  • 28
    • 0037336180 scopus 로고    scopus 로고
    • Comprehensive studies of drug resistance mediated by overexpression of response regulators of two-component signal transduction systems in Escherichia coli
    • DOI 10.1128/JB.185.6.1851-1856.2003
    • Comprehensive studies of drug resistance mediated by overexpression of response regulators of two-component signal transduction systems in Escherichia coli. H Hirakawa K Nishino T Hirata A Yamaguchi, J Bacteriol 2003 185 1851 1856 10.1128/JB.185.6.1851-1856.2003 12618449 (Pubitemid 36297885)
    • (2003) Journal of Bacteriology , vol.185 , Issue.6 , pp. 1851-1856
    • Hirakawa, H.1    Nishino, K.2    Hirata, T.3    Yamaguchi, A.4
  • 29
    • 0035145680 scopus 로고    scopus 로고
    • Overexpression of the response regulator evgA of the two-component signal transduction system modulates multidrug resistance conferred by multidrug resistance transporters
    • 10.1128/JB.183.4.1455-1458.2001. 11157960
    • Overexpression of the response regulator evgA of the two-component signal transduction system modulates multidrug resistance conferred by multidrug resistance transporters. K Nishino A Yamaguchi, J Bacteriol 2001 183 1455 145 10.1128/JB.183.4.1455-1458.2001 11157960
    • (2001) J Bacteriol , vol.183 , pp. 1455-145
    • Nishino, K.1    Yamaguchi, A.2
  • 30
    • 0036206907 scopus 로고    scopus 로고
    • EvgA of the two-component signal transduction system modulates production of the yhiUV multidrug transporter in Escherichia coli
    • 10.1128/JB.184.8.2319-2323.2002. 11914367
    • EvgA of the two-component signal transduction system modulates production of the yhiUV multidrug transporter in Escherichia coli. K Nishino A Yamaguchi, J Bacteriol 2002 184 2319 2323 10.1128/JB.184.8.2319-2323.2002 11914367
    • (2002) J Bacteriol , vol.184 , pp. 2319-2323
    • Nishino, K.1    Yamaguchi, A.2
  • 31
    • 0025980239 scopus 로고
    • Increased spontaneous mutation and alkylation sensitivity of Escherichia coli strains lacking the ogt O6-methylguanine DNA repair methyltransferase
    • 2002008
    • Increased spontaneous mutation and alkylation sensitivity of Escherichia coli strains lacking the ogt O6-methylguanine DNA repair methyltransferase. GW Rebeck L Samson, J Bacteriol 1991 173 2068 2076 2002008
    • (1991) J Bacteriol , vol.173 , pp. 2068-2076
    • Rebeck, G.W.1    Samson, L.2
  • 32
    • 0028117141 scopus 로고
    • Structure and function of DNA photolyase
    • 10.1021/bi00167a001. 8286340
    • Structure and function of DNA photolyase. A Sancar, Biochemistry 1994 33 2 9 10.1021/bi00167a001 8286340
    • (1994) Biochemistry , vol.33 , pp. 2-9
    • Sancar, A.1
  • 33
    • 0017888032 scopus 로고
    • Pathways of mutagenesis and repair in Escherichia coli exposed to low levels of simple alkylating agents
    • 355228
    • Pathways of mutagenesis and repair in Escherichia coli exposed to low levels of simple alkylating agents. PF Schendel M Defais P Jeggo L Samson J Cairns, J Bacteriol 1978 135 466 475 355228
    • (1978) J Bacteriol , vol.135 , pp. 466-475
    • Schendel, P.F.1    Defais, M.2    Jeggo, P.3    Samson, L.4    Cairns, J.5
  • 34
    • 0024343695 scopus 로고
    • Induction of dnaN and dnaQ gene expression in Escherichia coli by alkylation damage to DNA
    • 2656258
    • Induction of dnaN and dnaQ gene expression in Escherichia coli by alkylation damage to DNA. A Quĩones J Kaasch M Kaasch W Messer, EMBO J 1989 8 587 593 2656258
    • (1989) EMBO J , vol.8 , pp. 587-593
    • Quĩones, A.1    Kaasch, J.2    Kaasch, M.3    Messer, W.4
  • 35
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • 10.1073/pnas.120163297. 10829079
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. KA Datsenko BL Wanner, Proc Natl Acad Sci USA 2000 97 6640 6645 10.1073/pnas.120163297 10829079
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 36
    • 33749441282 scopus 로고    scopus 로고
    • Novel gene members in the Pho regulon of Escherichia coli
    • 10.1111/j.1574-6968.2006.00440.x. 17020555
    • Novel gene members in the Pho regulon of Escherichia coli. JH Baek SY Lee, FEMS Microbiol Lett 2006 264 104 109 10.1111/j.1574-6968.2006.00440.x 17020555
    • (2006) FEMS Microbiol Lett , vol.264 , pp. 104-109
    • Baek, J.H.1    Lee, S.Y.2
  • 37
    • 0035710746 scopus 로고    scopus 로고
    • Tmethod
    • 10.1006/meth.2001.1262. 11846609
    • Tmethod. KJ Livak TD Schmittgen, Methods 2001 25 402 408 10.1006/meth.2001.1262 11846609
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 38
    • 0142072824 scopus 로고    scopus 로고
    • Engineering Escherichia coli for increased productivity of serine-rich proteins based on proteome profiling
    • 10.1128/AEM.69.10.5772-5781.2003. 14532024
    • Engineering Escherichia coli for increased productivity of serine-rich proteins based on proteome profiling. MJ Han KJ Jeong JS Yoo SY Lee, Appl Environ Microbiol 2003 69 5772 5781 10.1128/AEM.69.10.5772-5781.2003 14532024
    • (2003) Appl Environ Microbiol , vol.69 , pp. 5772-5781
    • Han, M.J.1    Jeong, K.J.2    Yoo, J.S.3    Lee, S.Y.4
  • 39
    • 33745697839 scopus 로고    scopus 로고
    • The proteome of Mannheimia succiniciproducens, a capnophilic rumen bacterium
    • 10.1002/pmic.200500837. 16758448
    • The proteome of Mannheimia succiniciproducens, a capnophilic rumen bacterium. JW Lee SY Lee H Song JS Yoo, Proteomics 2006 6 3550 3566 10.1002/pmic.200500837 16758448
    • (2006) Proteomics , vol.6 , pp. 3550-3566
    • Lee, J.W.1    Lee, S.Y.2    Song, H.3    Yoo, J.S.4
  • 40
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • 10.1038/227680a0. 5432063
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4. UK Laemmli, Nature 1970 227 680 685 10.1038/227680a0 5432063
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 41
    • 0035191291 scopus 로고    scopus 로고
    • Proteome analysis of metabolically engineered Escherichia coli producing Poly(3-hydroxybutyrate)
    • 10.1128/JB.183.1.301-308.2001. 11114930
    • Proteome analysis of metabolically engineered Escherichia coli producing Poly(3-hydroxybutyrate). M-J Han SS Yoon SY Lee, J Bacteriol 2001 183 301 308 10.1128/JB.183.1.301-308.2001 11114930
    • (2001) J Bacteriol , vol.183 , pp. 301-308
    • Han, M.-J.1    Yoon, S.S.2    Lee, S.Y.3


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