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Volumn 20, Issue 11, 2009, Pages 2006-2012

Evaluation of the ALiPHAT Method for PC-IDMS and Correlation of Limits-of-Detection with Nonpolar Surface Area

Author keywords

[No Author keywords available]

Indexed keywords

ALKYLATING REAGENTS; LAMININ; N-TERMINALS; NONPOLAR SURFACE AREA; PROSTATE SPECIFIC ANTIGEN; TRYPTIC PEPTIDES;

EID: 70349758404     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2009.07.019     Document Type: Article
Times cited : (15)

References (32)
  • 2
    • 0000568858 scopus 로고
    • Applications of Isotope-Dilution Mass-Spectrometry in Clinical-Chemistry, Pharmacokinetics, and Toxicology
    • de Leenheer A.P., and Thienpont L.M. Applications of Isotope-Dilution Mass-Spectrometry in Clinical-Chemistry, Pharmacokinetics, and Toxicology. Mass Spectrom. Rev. 11 4 (1992) 249-307
    • (1992) Mass Spectrom. Rev. , vol.11 , Issue.4 , pp. 249-307
    • de Leenheer, A.P.1    Thienpont, L.M.2
  • 3
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative Analysis of Complex Protein Mixtures Using Isotope-Coded Affinity Tags
    • Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., and Aebersold R. Quantitative Analysis of Complex Protein Mixtures Using Isotope-Coded Affinity Tags. Nat. Biotechnol. 17 10 (1999) 994-999
    • (1999) Nat. Biotechnol. , vol.17 , Issue.10 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3    Turecek, F.4    Gelb, M.H.5    Aebersold, R.6
  • 4
    • 0036246088 scopus 로고    scopus 로고
    • Quantitative Proteome Analysis by Solid-Phase Isotope Tagging and Mass Spectrometry
    • Zhou H., Ranish J.A., Watts J.D., and Aebersold R. Quantitative Proteome Analysis by Solid-Phase Isotope Tagging and Mass Spectrometry. Nat. Biotechnol. 20 5 (2002) 512-515
    • (2002) Nat. Biotechnol. , vol.20 , Issue.5 , pp. 512-515
    • Zhou, H.1    Ranish, J.A.2    Watts, J.D.3    Aebersold, R.4
  • 5
    • 1042284932 scopus 로고    scopus 로고
    • Protein Profiling with Cleavable Isotope-Coded Affinity Tag (cICAT) Reagents-The Yeast Salinity Stress Response
    • Li J.X., Steen H., and Gygi S.P. Protein Profiling with Cleavable Isotope-Coded Affinity Tag (cICAT) Reagents-The Yeast Salinity Stress Response. Mol. Cell. Proteom. 2 11 (2003) 1198-1204
    • (2003) Mol. Cell. Proteom. , vol.2 , Issue.11 , pp. 1198-1204
    • Li, J.X.1    Steen, H.2    Gygi, S.P.3
  • 6
    • 14644392991 scopus 로고    scopus 로고
    • Isotope-Differentiated Binding Energy Shift Tags [IDBEST (TM)] for Improved Targeted Biomarker Discovery and Validation
    • Hall M.P., and Schneider L.V. Isotope-Differentiated Binding Energy Shift Tags [IDBEST (TM)] for Improved Targeted Biomarker Discovery and Validation. Expert Rev. Proteom. 1 4 (2004) 421-431
    • (2004) Expert Rev. Proteom. , vol.1 , Issue.4 , pp. 421-431
    • Hall, M.P.1    Schneider, L.V.2
  • 7
    • 0033956669 scopus 로고    scopus 로고
    • Signature-Peptide Approach to Detecting Proteins in Complex Mixtures
    • Geng M.H., Ji J.Y., and Regnier F.E. Signature-Peptide Approach to Detecting Proteins in Complex Mixtures. J. Chromatogr. A 870 1/2 (2000) 295-313
    • (2000) J. Chromatogr. A , vol.870 , Issue.1-2 , pp. 295-313
    • Geng, M.H.1    Ji, J.Y.2    Regnier, F.E.3
  • 8
    • 0037040607 scopus 로고    scopus 로고
    • Global Internal Standard Technology for Comparative Proteomics
    • Chakraborty A., and Regnier F.E. Global Internal Standard Technology for Comparative Proteomics. J. Chromatogr. A 949 1/2 (2002) 173-184
    • (2002) J. Chromatogr. A , vol.949 , Issue.1-2 , pp. 173-184
    • Chakraborty, A.1    Regnier, F.E.2
  • 10
    • 0036171359 scopus 로고    scopus 로고
    • De Novo Peptide Sequencing and Quantitative Profiling of Complex Protein Mixtures Using Mass-Coded Abundance tagging
    • Cagney G., and Emili A. De Novo Peptide Sequencing and Quantitative Profiling of Complex Protein Mixtures Using Mass-Coded Abundance tagging. Nat. Biotechnol. 20 2 (2002) 163-170
    • (2002) Nat. Biotechnol. , vol.20 , Issue.2 , pp. 163-170
    • Cagney, G.1    Emili, A.2
  • 11
    • 0035356565 scopus 로고    scopus 로고
    • Phosphoprotein Isotope-Coded Affinity Tag Approach for Isolating and Quantitating Phosphopeptides in Proteome-Wide Analyses
    • Goshe M.B., Conrads T.P., Panisko E.A., Angell N.H., Veenstra T.D., and Smith R.D. Phosphoprotein Isotope-Coded Affinity Tag Approach for Isolating and Quantitating Phosphopeptides in Proteome-Wide Analyses. Anal. Chem. 73 11 (2001) 2578-2586
    • (2001) Anal. Chem. , vol.73 , Issue.11 , pp. 2578-2586
    • Goshe, M.B.1    Conrads, T.P.2    Panisko, E.A.3    Angell, N.H.4    Veenstra, T.D.5    Smith, R.D.6
  • 12
    • 3543121341 scopus 로고    scopus 로고
    • Quantification in Proteomics through Stable Isotope Coding: A Review
    • Julka S., and Regnier F. Quantification in Proteomics through Stable Isotope Coding: A Review. J. Proteome Res. 3 3 (2004) 350-363
    • (2004) J. Proteome Res. , vol.3 , Issue.3 , pp. 350-363
    • Julka, S.1    Regnier, F.2
  • 13
    • 8844287599 scopus 로고    scopus 로고
    • Current Chemical Tagging Strategies for Proteome Analysis by Mass Spectrometry
    • Leitner A., and Lindner W. Current Chemical Tagging Strategies for Proteome Analysis by Mass Spectrometry. J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 813 1/2 (2004) 1-26
    • (2004) J. Chromatogr. B Anal. Technol. Biomed. Life Sci. , vol.813 , Issue.1-2 , pp. 1-26
    • Leitner, A.1    Lindner, W.2
  • 14
    • 33644524918 scopus 로고    scopus 로고
    • Mass Spectrometry-Based Proteomics Turns Quantitative
    • Ong S.E., and Mann M. Mass Spectrometry-Based Proteomics Turns Quantitative. Nat. Chem. Biol. 1 5 (2005) 252-262
    • (2005) Nat. Chem. Biol. , vol.1 , Issue.5 , pp. 252-262
    • Ong, S.E.1    Mann, M.2
  • 15
    • 0032535467 scopus 로고    scopus 로고
    • Modification of Cysteine Residues by Alkylation. A Tool in Peptide Mapping and Protein Identification
    • Sechi S., and Chait B.T. Modification of Cysteine Residues by Alkylation. A Tool in Peptide Mapping and Protein Identification. Anal. Chem. 70 24 (1998) 5150-5158
    • (1998) Anal. Chem. , vol.70 , Issue.24 , pp. 5150-5158
    • Sechi, S.1    Chait, B.T.2
  • 16
    • 0034940957 scopus 로고    scopus 로고
    • Reduction and Alkylation of Proteins in Preparation of Two-Dimensional Map Analysis: Why, When, and How?
    • Herbert B., Galvani M., Hamdan M., Olivieri E., MacCarthy J., Pedersen S., and Righetti P.G. Reduction and Alkylation of Proteins in Preparation of Two-Dimensional Map Analysis: Why, When, and How?. Electrophoresis 22 10 (2001) 2046-2057
    • (2001) Electrophoresis , vol.22 , Issue.10 , pp. 2046-2057
    • Herbert, B.1    Galvani, M.2    Hamdan, M.3    Olivieri, E.4    MacCarthy, J.5    Pedersen, S.6    Righetti, P.G.7
  • 17
    • 0036629573 scopus 로고    scopus 로고
    • Modern Strategies for Protein Quantification in Proteome Analysis: Advantages and Limitations
    • Hamdan M., and Righetti P.G. Modern Strategies for Protein Quantification in Proteome Analysis: Advantages and Limitations. Mass Spectrom. Rev. 21 4 (2002) 287-302
    • (2002) Mass Spectrom. Rev. , vol.21 , Issue.4 , pp. 287-302
    • Hamdan, M.1    Righetti, P.G.2
  • 18
    • 0035497781 scopus 로고    scopus 로고
    • Practical Implications of Some Recent Studies in Electrospray Ionization Fundamentals
    • Cech N.B., and Enke C.G. Practical Implications of Some Recent Studies in Electrospray Ionization Fundamentals. Mass Spectrom. Rev. 20 6 (2001) 362-387
    • (2001) Mass Spectrom. Rev. , vol.20 , Issue.6 , pp. 362-387
    • Cech, N.B.1    Enke, C.G.2
  • 19
    • 0001510590 scopus 로고
    • Ion Formation from Charged Droplets-Roles of Geometry, Energy, and Time
    • Fenn J.B. Ion Formation from Charged Droplets-Roles of Geometry, Energy, and Time. J. Am. Soc. Mass Spectrom. 4 7 (1993) 524-535
    • (1993) J. Am. Soc. Mass Spectrom. , vol.4 , Issue.7 , pp. 524-535
    • Fenn, J.B.1
  • 20
    • 0034235367 scopus 로고    scopus 로고
    • Relating Electrospray Ionization Response to Nonpolar Character of Small Peptides
    • Cech N.B., and Enke C.G. Relating Electrospray Ionization Response to Nonpolar Character of Small Peptides. Anal. Chem. 72 13 (2000) 2717-2723
    • (2000) Anal. Chem. , vol.72 , Issue.13 , pp. 2717-2723
    • Cech, N.B.1    Enke, C.G.2
  • 21
    • 0037444647 scopus 로고    scopus 로고
    • Implications of Hydrophobicity and Free Energy of Solvation for Characterization of Nucleic Acids by Electrospray Ionization Mass Spectrometry
    • Null A.P., Nepomuceno A.I., and Muddiman D.C. Implications of Hydrophobicity and Free Energy of Solvation for Characterization of Nucleic Acids by Electrospray Ionization Mass Spectrometry. Anal. Chem. 75 6 (2003) 1331-1339
    • (2003) Anal. Chem. , vol.75 , Issue.6 , pp. 1331-1339
    • Null, A.P.1    Nepomuceno, A.I.2    Muddiman, D.C.3
  • 22
    • 34250172066 scopus 로고    scopus 로고
    • Achieving Augmented Limits of Detection for Peptides with Hydrophobic Alkyl Tags
    • Frahm J.L., Bori I.D., and Comins D.L. Achieving Augmented Limits of Detection for Peptides with Hydrophobic Alkyl Tags. Anal. Chem. 79 11 (2007) 3989-3995
    • (2007) Anal. Chem. , vol.79 , Issue.11 , pp. 3989-3995
    • Frahm, J.L.1    Bori, I.D.2    Comins, D.L.3
  • 23
    • 39549091726 scopus 로고    scopus 로고
    • Synthesis, Characterization, and Application of Iodoacetamide Derivatives Utilized for the ALiPHAT Strategy
    • Williams Jr. D.K., Meadows C.W., Bori I.D., Hawkridge A.M., Comins D.L., and Muddiman D.C. Synthesis, Characterization, and Application of Iodoacetamide Derivatives Utilized for the ALiPHAT Strategy. J. Am. Chem. Soc. 130 7 (2008) 2122-2123
    • (2008) J. Am. Chem. Soc. , vol.130 , Issue.7 , pp. 2122-2123
    • Williams Jr., D.K.1    Meadows, C.W.2    Bori, I.D.3    Hawkridge, A.M.4    Comins, D.L.5    Muddiman, D.C.6
  • 24
    • 33745786994 scopus 로고    scopus 로고
    • Derivatization of Arginine Residues with Malondialdehyde for the Analysis of Peptides and Protein Digests by LC-ESI-MSMS
    • Foettinger A., Leitner A., and Lindner W. Derivatization of Arginine Residues with Malondialdehyde for the Analysis of Peptides and Protein Digests by LC-ESI-MSMS. J. Mass Spectrom. 41 5 (2006) 623-632
    • (2006) J. Mass Spectrom. , vol.41 , Issue.5 , pp. 623-632
    • Foettinger, A.1    Leitner, A.2    Lindner, W.3
  • 25
    • 33646236915 scopus 로고    scopus 로고
    • Derivatization by 6-Aminoquinolyl-N-Hydroxysuccinimidyl Carbamate for Enhancing the Ionization Yield of Small Peptides and Glycopeptides in Matrix-Assisted Laser Desorption/Ionization and Electrospray Ionization Mass Spectrometry
    • Ullmer R., Plematl A., and Rizzi A. Derivatization by 6-Aminoquinolyl-N-Hydroxysuccinimidyl Carbamate for Enhancing the Ionization Yield of Small Peptides and Glycopeptides in Matrix-Assisted Laser Desorption/Ionization and Electrospray Ionization Mass Spectrometry. Rapid Commun. Mass Spectrom. 20 9 (2006) 1469-1479
    • (2006) Rapid Commun. Mass Spectrom. , vol.20 , Issue.9 , pp. 1469-1479
    • Ullmer, R.1    Plematl, A.2    Rizzi, A.3
  • 26
    • 33745268913 scopus 로고    scopus 로고
    • Enhancing Electrospray Ionization Efficiency of Peptides by Derivatization
    • Mirzaei H., and Regnier F. Enhancing Electrospray Ionization Efficiency of Peptides by Derivatization. Anal. Chem. 78 12 (2006) 4175-4183
    • (2006) Anal. Chem. , vol.78 , Issue.12 , pp. 4175-4183
    • Mirzaei, H.1    Regnier, F.2
  • 27
    • 0016160429 scopus 로고
    • Measurement of Protein by Spectrophotometry at 205-Nm
    • Scopes R.K. Measurement of Protein by Spectrophotometry at 205-Nm. Anal. Biochem. 59 1 (1974) 277-282
    • (1974) Anal. Biochem. , vol.59 , Issue.1 , pp. 277-282
    • Scopes, R.K.1
  • 28
    • 0031008576 scopus 로고    scopus 로고
    • Hydrophobicity Regained
    • Karplus P.A. Hydrophobicity Regained. Protein Sci. 6 6 (1997) 1302-1307
    • (1997) Protein Sci. , vol.6 , Issue.6 , pp. 1302-1307
    • Karplus, P.A.1
  • 30
    • 4444301306 scopus 로고    scopus 로고
    • Absolute Quantification of the Model Biomarker Prostate-Specific Antigen in Serum by LC-MS/MS Using Protein Cleavage and Isotope Dilution Mass Spectrometry
    • Barnidge D.R., Goodmanson M.K., Klee G.G., and Muddiman D.C. Absolute Quantification of the Model Biomarker Prostate-Specific Antigen in Serum by LC-MS/MS Using Protein Cleavage and Isotope Dilution Mass Spectrometry. J. Proteome Res. 3 3 (2004) 644-652
    • (2004) J. Proteome Res. , vol.3 , Issue.3 , pp. 644-652
    • Barnidge, D.R.1    Goodmanson, M.K.2    Klee, G.G.3    Muddiman, D.C.4
  • 31
    • 61849133375 scopus 로고    scopus 로고
    • Absolute Quantification of C-reactive Protein in Human Plasma Derived from Patients with Epithelial Ovarian Cancer Utilizing Protein Cleavage Isotope Dilution Mass Spectrometry
    • Williams D.K., and Muddiman D.C. Absolute Quantification of C-reactive Protein in Human Plasma Derived from Patients with Epithelial Ovarian Cancer Utilizing Protein Cleavage Isotope Dilution Mass Spectrometry. J. Proteome Res. 8 2 (2009) 1085-1090
    • (2009) J. Proteome Res. , vol.8 , Issue.2 , pp. 1085-1090
    • Williams, D.K.1    Muddiman, D.C.2
  • 32
    • 0000781283 scopus 로고
    • Application of Secondary Ion and Matrix-Assisted Laser Desorption-Ionization Time-of-Flight Mass Spectrometry for the Quantitative Analysis of Biological Molecules
    • Muddiman D.C., Gusev A.I., and Hercules D.M. Application of Secondary Ion and Matrix-Assisted Laser Desorption-Ionization Time-of-Flight Mass Spectrometry for the Quantitative Analysis of Biological Molecules. Mass Spectrom. Rev. 14 6 (1995) 383-429
    • (1995) Mass Spectrom. Rev. , vol.14 , Issue.6 , pp. 383-429
    • Muddiman, D.C.1    Gusev, A.I.2    Hercules, D.M.3


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