Erratum to "A dendrogram of archaea based on lipid component parts composition and its relationship to rRNA phylogeny" (DOI:10.1016/j.syapm.2008.02.005);A dendrogram of archaea based on lipid component parts composition and its relationship to rRNA phylogeny

Systematic and Applied Microbiology

Volumn 31, Issue 3, 2008, Pages 169-182

  Koga, Yosuke ^a   Nakano, Masahiro ^b  

^a UNIVERSITY OF OCCUPATIONAL AND ENVIRONMENTAL HEALTH   (Japan)

^b UNIVERSITY OF OCCUPATIONAL AND ENVIRONMENTAL HEALTH   (Japan)

Author keywords

Archaea; Chemotaxonomic marker; Cluster analysis; Ether lipid; Glycolipid; Phospholipid

Indexed keywords

BACTERIAL RNA; LIPID; RIBOSOME RNA;

ARCHAEBACTERIUM; ARTICLE; CLUSTER ANALYSIS; COMPUTER ANALYSIS; CORRELATION ANALYSIS; EURYARCHAEOTA; GENE MUTATION; HYPOTHESIS; LIPID COMPOSITION; LIPOGENESIS; MOLECULAR EVOLUTION; MOLECULE; NONHUMAN; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; TAXON;

ARCHAEA; EURYARCHAEOTA;

EID: 46849090922     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2008.08.006     Document Type: Erratum

References (27)

1. Daiyasu H., Hiroike T., Koga Y., and Toh H. The analysis of membrane stereochemistry with the homology modeling of sn-glycerol-1-phosphate dehydrogenase. Protein Eng. 15 (2002) 987-995
2. Daiyasu H., Kuma K., Yokoi T., Morii H., Koga Y., and Toh H. A study on archaeal enzymes involved in polar lipids synthesis by an approach linking the information about amino acid sequences, genomic contexts and lipid composition. Archaea 1 (2005) 399-410
3. De Rosa M., Gambacorta A., Nicolaus B., Ross H.N.M., Grant W.D., and Bu'Lock J.D. An asymmetric archaebacterial diether lipid from alkaliphilic bacterial halophiles. J. Gen. Microbiol. 128 (1982) 343-348
4. Hemmi H., Shibuya K., Takahashi Y., Nakayama T., and Nishino T. (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase from the thermoacidophilic archaeon Sulfolobus solfataricus - molecular cloning and characterization of a membrane-intrinsic prenyltransferase involved in the biosynthesis of archaeal ether-linked membrane lipids. J. Biol. Chem. 279 (2004) 50197-50203
5. Kates M. Glyco-, phosphoglyco- and sulfoglycoglycerolipids of bacteria. In: Kates M. (Ed). Glycolipids, Phosphoglycolipids, and Sulfoglycolipids vol. 6 (1990), Plenum Press, New York 1-122
6. Kates M. Membrane lipids of archaea. In: Kates M., Kushner D.J., and Matheson A.T. (Eds). The Biochemistry of Archaea (Archaebacteria) (1993), Elsevier Science Publishers B.V., Amsterdam 261-295
7. Koga Y., Akagawa-Matsushita M., Ohga M., and Nishihara M. Taxonomic significance of the distribution of the component parts of polar ether lipids in methanogens. Syst. Appl. Microbiol. 16 (1993) 342-351
8. Koga Y., and Morii H. Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations. Micobiol. Mol. Biol. Rev. 71 (2007) 97-120
9. Koga Y., and Morii H. Recent advances in structural research on ether lipids from archaea including comparative and physiological aspects. Biosci. Biotechnol. Biochem. 69 (2005) 2019-2034
10. Koga Y., Morii H., Akagawa-Matsushita M., and Ohga M. Correlation of polar lipid composition with 16 s rRNA phylogeny in methanogens. Further analysis of lipid component parts,. Biosci. Biotechnol. Biochem. 62 (1998) 230-236
11. Koga Y., Nishihara M., Morii H., and Akagawa-Matsushita M. Ether polar lipids of methanogenic bacteria: structures, comparative aspects, and biosynthesis. Microbiol. Rev. 57 (1993) 164-182
12. Koga Y., Ohga M., Nishihara M., and Morii H. Distribution of diphytanyl ether analog of phosphatidylserine and an ethanolamine-containing tetraether lipid in methanogenic bacteria. Syst. Appl. Microbiol. 9 (1987) 176-182
13. Ludwig W., and Klenk H.-P. Overview: a phylogenetic backbone and taxonomic framework for prokaryotic systematics. In: Boone D.R., and Castenholz R.W. (Eds). Bergey's manual of systematic bacteriology - the archaea and the deeply branching and phototrophic bacteria vol. 1 (2001), Springer, New York 49-65
14. Moldoveanu N., Kates M., Montero C.G., and Ventosa A. Polar lipids of non-alkaliphilic halococci. Biochim. Biophys. Acta 1046 (1990) 127-135
15. Morth S., and Tindall B.J. Variation of polar lipid composition within haloalkaliphilic archaebacteria. Syst. Appl. Microbiol. 6 (1985) 247-250
16. Nishihara M., Morii H., and Koga Y. Structure determination of a quartet of novel tetraether lipids from Methanobacterium thermoautotrophicum. J. Biochem. 101 (1987) 1007-1015
17. Nomura M. Assembly of bacterial ribosomes. Science 179 (1973) 864-873
18. Olsen G.J., Woese C.R., and Overbeek R. The winds of (evolutionary) change - breathing new life into microbiology. J. Bacteriol. 176 (1994) 1
19. Payandeh J., Fujihashi M., and Gillon E.F. Pai W. The crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase reveals an ancient fold for an ancient enzyme. J. Biol. Chem. 281 (2006) 6070-6078
20. Shimada H., Nemoto N., Shida Y., Oshima T., and Yamagishi A. Complete polar lipid composition of Thermoplasma acidophilum HO-62 determined by high-performance liquid chromatography with evaporative light-scattering detection. J. Bacteriol. 184 (2002) 556-563
21. Sprott G.D., Agnew B.J., and Patel G.B. Structural features of ether lipids in the archaeobacterial thermophiles Pyrococcus furiosus, Methanopyrus kandleri, Methanothermus fervidus, and Sulfolobus acidocaldarius. Can. J. Microbiol. 43 (1997) 467-476
22. Sugai A., Uda I., Itoh Y.H., and Itoh T. The core lipid composition of 17 strains of hyperthermophilic archaea, Thermococcales. J. Oleo Sci. 53 (2004) 41-44
23. Swain M., Brisson J.R., Sprott G.D., Cooper F.P., and Patel G.B. Identification of β-l-gulose as the sugar moiety of the main polar lipid Thermoplasma acidophilum. Biochim. Biophys. Acta 1345 (1997) 56-64
24. Tarui M., Tanaka N., Tomura K., Ohga M., Morii H., and Koga Y. Lipid component parts analysis of the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus. J. UOEH (2007)
25. Torreblanca M., Rodoriguez-Valera F., Juez G., Ventosa A., Kamekura M., and Kates M. Classification of non-alkaliphilic halobacteria based on numerical taxonomy and polar lipid composition, and description of Haloarcula gen. nov. and Haloferax gen. nov. Syst. Appl. Microbiol. 8 (1986) 89-99
26. Ward J.H. Hierarchical grouping to optimize an objective function. J. Am. Stat. Assoc. 58 (1963) 236-244
27. Zuckerkandl E., and Pauling L. Molecules as documents of evolutionary history. J. Theor. Biol. 8 (1965) 357-366