Property of cold inducible DEAD-box RNA helicase in hyperthermophilic archaea

Biochemical and Biophysical Research Communications

Volumn 389, Issue 4, 2009, Pages 622-627

  Shimada, Yoko ^a   Fukuda, Wakao ^a   Akada, Yohei ^a   Ishida, Mayumi ^a,b   Nakayama, Junichi ^a,b   Imanaka, Tadayuki ^c   Fujiwara, Shinsuke ^a  

^a KWANSEI GAKUIN UNIVERSITY   (Japan)

^b RIKEN Center for Biosystems Dynamics Research   (Japan)

^c RITSUMEIKAN UNIVERSITY   (Japan)

Author keywords

Archaea; Cold adaptation; DEAD box protein; Hyperthermophile; Thermococcus kodakaraensis

Indexed keywords

ADENOSINE TRIPHOSPHATASE; DEAD BOX PROTEIN; RNA HELICASE; SINGLE STRANDED RNA;

ARTICLE; BACTERIAL GROWTH; CONTROLLED STUDY; ENZYME ACTIVITY; IMMUNOBLOTTING; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN STRUCTURE; REAL TIME POLYMERASE CHAIN REACTION; TEMPERATURE SENSITIVITY; THERMOCOCCUS; THERMOCOCCUS KODAKARAENSIS; THERMOSTABILITY; TRANSCRIPTION REGULATION;

BASE SEQUENCE; COLD TEMPERATURE; DEAD-BOX RNA HELICASES; GENE EXPRESSION REGULATION, ARCHAEAL; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; THERMOCOCCUS;

ARCHAEA; PYROCOCCUS; THERMOCOCCUS KODAKARENSIS;

EID: 70349744224     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2009.09.038     Document Type: Article

References (29)

1. Craig E.A., Gambill B.D., and Nelson R.J. Heat shock proteins: molecular chaperones of protein biogenesis. Microbiol. Rev. 57 (1993) 402-414
2. Lindquist S., and Craig E.A. The heat-shock proteins. Annu. Rev. Genet. 22 (1988) 631-677
3. Thieringer H.A., Jones P.G., and Inouye M. Cold shock and adaptation. Bioessays 20 (1998) 49-57
4. Gualerzi C.O., Giuliodori A.M., and Pon C.L. Transcriptional and post-transcriptional control of cold-shock genes. J. Mol. Biol. 331 (2003) 527-539
5. Jones P.G., Mitta M., Kim Y., Jiang W., and Inouye M. Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli. Proc. Natl. Acad. Sci. USA 93 (1996) 76-80
6. Chamot D., Magee W.C., Yu E., and Owttrim G.W. A cold Shock-induced cyanobacterial RNA helicase. J. Bacteriol. 181 (1999) 1728-1732
7. Hunger K., Beckering C.L., Wiegeshoff F., Graumann P.L., and Marahiel M.A. Cold-induced putative DEAD box RNA helicases CshA and CshB are essential for cold adaptation and interact with cold shock protein B in Bacillus subtilis. J. Bacteriol. 188 (2006) 240-248
8. Prud'homme-Genereux A., Beran R.K., Iost I., Ramey C.S., Mackie G.A., and Simons R.W. Physical and functional interactions among RNase E, polynucleotide phosphorylase and the cold-shock protein, CsdA: evidence for a 'cold shock degradosome'. Mol. Microbiol. 54 (2004) 1409-1421
9. Charollais J., Dreyfus M., and Iost I. CsdA, a cold-shock RNA helicase from Escherichia coli, is involved in the biogenesis of 50S ribosomal subunit. Nucleic Acids Res. 32 (2004) 2751-2759
10. Owttrim G.W. RNA helicases and abiotic stress. Nucleic Acids Res. 34 (2006) 3220-3230
11. Gorbalenya A.E., and Koonin E.V. Helicases: amino acid sequence comparisons and structure-function relationships. Curr. Opin. Struct. Biol. 3 (1993) 419-429
12. Tanner N.K., and Linder P. DExD/H box RNA helicases: from generic motors to specific dissociation functions. Mol. Cell 8 (2001) 251-262
13. Silverman E., Edwalds-Gilbert G., and Lin R.J. DExD/H-box proteins and their partners: helping RNA helicases unwind. Gene 312 (2003) 1-16
14. Tanner N.K., Cordin O., Banroques J., Doere M., and Linder P. The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis. Mol. Cell 11 (2003) 127-138
15. Boonyaratanakornkit B.B., Simpson A.J., Whitehead T.A., Fraser C.M., El-Sayed N.M., and Clark D.S. Transcriptional profiling of the hyperthermophilic methanarchaeon Methanococcus jannaschii in response to lethal heat and non-lethal cold shock. Environ. Microbiol. 7 (2005) 789-797
16. Lim J., Thomas T., and Cavicchioli R. Low temperature regulated DEAD-box RNA helicase from the Antarctic archaeon, Methanococcoides burtonii. J. Mol. Biol. 297 (2000) 553-567
17. Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., and Imanaka T. Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res. 15 (2005) 352-363
18. Fujiwara S., Aki R., Yoshida M., Higashibata H., Imanaka T., and Fukuda W. Expression profiles and physiological roles of two types of molecular chaperonins from the hyperthermophilic archaeon Thermococcus kodakarensis. Appl. Environ. Microbiol. 74 (2008) 7306-7312
19. In: Garrity G.M., and Boone D.R. (Eds). Bergey's Manual of Systematic Bacteriology (2001), Springer-Verlag, New York
20. Fiala G., and Stetter K.O. Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100 °C. Arch. Microbiol. 145 (1986) 56-61
21. Xia B., Ke H., Jiang W., and Inouye M. The Cold box stem-loop proximal to the 5′-end of the Escherichia coli cspA gene stabilizes its mRNA at low temperature. J. Biol. Chem. 277 (2002) 6005-6011
22. Fukuda W., Morimoto N., Imanaka T., and Fujiwara S. Agmatine is essential for the cell growth of Thermococcus kodakaraensis. FEMS Microbiol. Lett. 287 (2008) 113-120
23. Fukuda W., Ismail Y.S., Fukui T., Atomi H., and Imanaka T. Characterization of an archaeal malic enzyme from the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1. Archaea 1 (2005) 293-301
24. Morikawa M., Izawa Y., Rashid N., Hoaki T., and Imanaka T. Purification and characterization of a thermostable thiol protease from a newly isolated hyperthermophilic Pyrococcus sp. Appl. Environ. Microbiol. 60 (1994) 4559-4566
25. Sako Y., Nomura N., Uchida A., Ishida Y., Morii H., Koga Y., Hoaki T., and Maruyama T. Aeropyrum pernix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 °C. Int. J. Syst. Bacteriol. 46 (1996) 1070-1077
26. Zeikus J.G., and Wolfe R.S. Methanobacterium thermoautotrophicus sp. n., an anaerobic, autotrophic, extreme thermophile. J. Bacteriol. 109 (1972) 707-715
27. Schleper C., Puehler G., Holz I., Gambacorta A., Janekovic D., Santarius U., Klenk H.P., and Zillig W. Picrophilus gen. nov., fam. nov.: a novel aerobic, heterotrophic, thermoacidophilic genus and family comprising archaea capable of growth around pH 0. J. Bacteriol. 177 (1995) 7050-7059
28. Suzuki T., Iwasaki T., Uzawa T., Hara K., Nemoto N., Kon T., Ueki T., Yamagishi A., and Oshima T. Sulfolobus tokodaii sp. nov. (f. Sulfolobus sp. strain 7), a new member of the genus Sulfolobus isolated from Beppu Hot Springs, Japan. Extremophiles 6 (2002) 39-44
29. Atomi H., Fukui T., Kanai T., Morikawa M., and Imanaka T. Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD1. Archaea 1 (2004) 263-267