Transcriptional profiling of rats subjected to gestational undernourishment: Implications for the developmental variations in metabolic traits

PLoS ONE

Volumn 4, Issue 9, 2009, Pages

  Morris, Tiffany J ^a   Vickers, Mark ^b   Gluckman, Peter ^b   Gilmour, Stewart ^a,b   Affara, Nabeel ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b UNIVERSITY OF AUCKLAND   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; DOWN REGULATION; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; INSULIN SENSITIVITY; LIVER; MALE; MALNUTRITION; MATERNAL NUTRITION; METABOLIC DISORDER; METABOLIC SYNDROME X; NONHUMAN; NUCLEOTIDE SEQUENCE; NUTRITIONAL STATUS; OBESITY; PHENOTYPE; RAT; SKELETAL MUSCLE; UPREGULATION; WHITE ADIPOSE TISSUE; ADIPOSE TISSUE; ANIMAL; DNA MICROARRAY; FOOD DEPRIVATION; GENETIC EPIGENESIS; METABOLISM; WISTAR RAT;

ANIMALIA; RATTUS;

GLUCOSE; INSULIN; SOMATOMEDIN C;

ADIPOSE TISSUE; ANIMALS; EPIGENESIS, GENETIC; FEMALE; FOOD DEPRIVATION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GLUCOSE; INSULIN; INSULIN-LIKE GROWTH FACTOR I; LIVER; MATERNAL NUTRITIONAL PHYSIOLOGICAL PHENOMENA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PHENOTYPE; RATS; RATS, WISTAR;

EID: 70349668913     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0007271     Document Type: Article

References (61)

1. Gluckman PD, Hanson MA (2004) Living with the past: evolution, development, and patterns of disease. Science 305: 1733-1736.
2. Bateson P (2001) Fetal experience and good adult design. Int J Epidemiol 30: 928-934.
3. Gluckman PD, Hanson MA, Spencer HG, Bateson P (2005) Environmental influences during development and their later consequences for health and disease: implications for the interpretation of empirical studies. Proc Biol Sci 272: 671-677.
4. Bateson P, Barker D, Clutton-Brock T, Deb D, D'Udine B, et al. (2004) Developmental plasticity and human health. Nature 430: 419-421.
5. McMillen IC, Robinson JS (2005) Developmental origins of the metabolic syndrome: prediction, plasticity, and programming. Physiol Rev 85: 571-633.
6. Hales CN, Barker DJ (2001) The thrifty phenotype hypothesis. Br Med Bull 60: 5-20.
7. Gluckman PD, Hanson MA, Morton SM, Pinal CS (2005) Life-long echoes-a critical analysis of the developmental origins of adult disease model. Biol Neonate 87: 127-139.
8. Barker DJ (2001) A new model for the origins of chronic disease. Med Health Care Philos 4: 31-35.
9. Gluckman PD, Hanson MA, Pinal C (2005) The developmental origins of adult disease. Matern Child Nutr 1: 130-141.
10. Vickers MH, Breier BH, Cutfield WS, Hofman PL, Gluckman PD (2000) Fetal origins of hyperphagia, obesity, and hypertension and postnatal amplification by hypercaloric nutrition. Am J Physiol Endocrinol Metab 279: E83-87.
11. Lillycrop KA, Phillips ES, Jackson AA, Hanson MA, Burdge GC (2005) Dietary protein restriction of pregnant rats induces and folic acid supplementation prevents epigenetic modification of hepatic gene expression in the offspring. J Nutr 135: 1382-1386.
12. Bird A (2002) DNA methylation patterns and epigenetic memory. Genes Dev. pp 6-21.
13. Bertram C, Trowern AR, Copin N, Jackson AA, Whorwood CB (2001) The maternal diet during pregnancy programs altered expression of the glucocorticoid receptor and type 2 11beta-hydroxysteroid dehydrogenase: potential molecular mechanisms underlying the programming of hypertension in utero. Endocrinology 142: 2841-2853.
14. Drake AJ, Tang JI, Nyirenda MJ (2007) Mechanisms underlying the role of glucocorticoids in the early life programming of adult disease. Clin Sci (Lond) 113: 219-232.
15. Woodall SM, Breier BH, Johnston BM, Gluckman PD (1996) A model of intrauterine growth retardation caused by chronic maternal undernutrition in the rat: effects on the somatotrophic axis and postnatal growth. J Endocrinol 150: 231-242.
16. Vickers MH, Gluckman PD, Coveny AH, Hofman PL, Cutfield WS, et al. (2008) The effect of neonatal leptin treatment on postnatal weight gain in male rats is dependent on maternal nutritional status during pregnancy. Endocrinology 149: 1906-1913.
17. Smyth GK (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
18. Du P, Kibbe WA, Lin SM (2008) lumi: a pipeline for processing Illumina microarray. Bioinformatics 24: 1547-1548.
19. Lin SM, Du P, Huber W, Kibbe WA (2008) Model-based variance-stabilizing transformation for Illumina microarray data. Nucleic Acids Res 36: e11.
20. Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, et al. (2003) DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 4: P3.
21. Gluckman PD, Lillycrop KA, Vickers MH, Pleasants AB, Phillips ES, et al. (2007) Metabolic plasticity during mammalian development is directionally dependent on early nutritional status. Proc Natl Acad Sci U S A 104: 12796-12800.
22. Granner D, Pilkis S (1990) The genes of hepatic glucose metabolism. J Biol Chem 265: 10173-10176.
23. Bertram CE, Hanson MA (2002) Prenatal programming of postnatal endocrine responses by glucocorticoids. Reproduction 124: 459-467.
24. Vickers MH, Gluckman PD, Coveny AH, Hofman PL, Cutfield WS, et al. (2005) Neonatal leptin treatment reverses developmental programming. Endocrinology 146: 4211-4216.
25. Ozanne SE, Olsen GS, Hansen LL, Tingey KJ, Nave BT, et al. (2003) Early growth restriction leads to down regulation of protein kinase C zeta and insulin resistance in skeletal muscle. J Endocrinol 177: 235-241.
26. Ozanne SE, Hales CN (2002) Pre- and early postnatal nongenetic determinants of type 2 diabetes. Expert Rev Mol Med 4: 1-14.
27. Koves TR, Ussher JR, Noland RC, Slentz D, Mosedale M, et al. (2008) Mitochondrial overload and incomplete fatty acid oxidation contribute to skeletal muscle insulin resistance. Cell Metab 7: 45-56.
28. Burns SP, Desai M, Cohen RD, Hales CN, Iles RA, et al. (1997) Gluconeogenesis, glucose handling, and structural changes in livers of the adult offspring of rats partially deprived of protein during pregnancy and lactation. J Clin Invest 100: 1768-1774.
29. Keller SR, Lamphere L, Lavan BE, Kuhne MR, Lienhard GE (1993) Insulin and IGF-I signaling through the insulin receptor substrate 1. Mol Reprod Dev 35: 346-351; discussion 351-342.
30. Farias EF, Marzan C, Mira-y-Lopez R (2005) Cellular retinol-binding protein-I inhibits PI3K/Akt signaling through a retinoic acid receptor-dependent mechanism that regulates p85-p110 heterodimerization. Oncogene 24: 1598-1606.
31. Ozanne SE, Jensen CB, Tingey KJ, Martin-Gronert MS, Grunnet L, et al. (2006) Decreased protein levels of key insulin signalling molecules in adipose tissue from young men with a low birthweight: potential link to increased risk of diabetes? Diabetologia 49: 2993-2999.
32. Vickers MH, Breier BH, McCarthy D, Gluckman PD (2003) Sedentary behavior during postnatal life is determined by the prenatal environment and exacerbated by postnatal hypercaloric nutrition. Am J Physiol Regul Integr Comp Physiol 285: R271-273.
33. Brown MS, Goldstein JL (1997) The SREBP pathway: regulation of cholesterol metabolism by proteolysis of a membrane-bound transcription factor. Cell 89: 331-340.
34. Stewart PM, Murry BA, Mason JI (1994) Type 2 11 beta-hydroxysteroid dehydrogenase in human fetal tissues. J Clin Endocrinol Metab 78: 1529-1532.
35. Milkereit P, Gadal O, Podtelejnikov A, Trumtel S, Gas N, et al. (2001) Maturation and intranuclear transport of pre-ribosomes requires Noc proteins. Cell 105: 499-509.
36. Uchio K, Tuchweber B, Manabe N, Gabbiani G, Rosenbaum J, et al. (2002) Cellular retinol-binding protein-1 expression and modulation during in vivo and in vitro myofibroblastic differentiation of rat hepatic stellate cells and portal fibroblasts. Lab Invest 82: 619-628.
37. Lepreux S, Bioulac-Sage P, Gabbiani G, Sapin V, Housset C, et al. (2004) Cellular retinol-binding protein-1 expression in normal and fibrotic/ cirrhotic human liver: different patterns of expression in hepatic stellate cells and (myo)fibroblast subpopulations. J Hepatol 40: 774-780.
38. Ziouzenkova O, Plutzky J (2008) Retinoid metabolism and nuclear receptor responses: New insights into coordinated regulation of the PPAR-RXR complex. FEBS Lett 582: 32-38.
39. Milani S, Grappone C, Pellegrini G, Schuppan D, Herbst H, et al. (1994) Undulin RNA and protein expression in normal and fibrotic human liver. Hepatology 20: 908-916.
40. Gerecke DR, Meng X, Liu B, Birk DE (2004) Complete primary structure and genomic organization of the mouse Col14a1 gene. Matrix Biol 22: 595-601.
41. Kmiec Z (2001) Cooperation of liver cells in health and disease. Adv Anat Embryol Cell Biol 161: III-XIII, 1-151.
42. Kunos G, Ishac EJ (1987) Mechanism of inverse regulation of alpha 1- and beta-adrenergic receptors. Biochem Pharmacol 36: 1185-1191.
43. Burcelin R, Uldry M, Foretz M, Perrin C, Dacosta A, et al. (2004) Impaired glucose homeostasis in mice lacking the alpha1b-adrenergic receptor subtype. J Biol Chem 279: 1108-1115.
44. Begin-Heick N (1994) Liver beta-adrenergic receptors, G proteins, and adenylyl cyclase activity in obesity-diabetes syndromes. Am J Physiol 266: C1664-1672.
45. Sparks LM, Xie H, Koza RA, Mynatt R, Hulver MW, et al. (2005) A high-fat diet coordinately downregulates genes required for mitochondrial oxidative phosphorylation in skeletal muscle. Diabetes 54: 1926-1933.
46. Du K, Herzig S, Kulkarni RN, Montminy M (2003) TRB3: a tribbles homolog that inhibits Akt/PKB activation by insulin in liver. Science 300: 1574-1577.
47. Haj FG, Zabolotny JM, Kim YB, Kahn BB, Neel BG (2005) Liver-specific protein-tyrosine phosphatase 1B (PTP1B) re-expression alters glucose homeostasis of PTP1B2/2mice. J Biol Chem 280: 15038-15046.
48. Lisinski I, Matsumoto H, Yver DR, Schurmann A, Cushman SW, et al. (2006) Identification and characterization of p49/STRAP as a novel GLUT4-binding protein. Biochem Biophys Res Commun 344: 1179-1185.
49. Iwahashi H, Yamagata K, Yoshiuchi I, Terasaki J, Yang Q, et al. (2002) Thyroid hormone receptor interacting protein 3 (trip3) is a novel coactivator of hepatocyte nuclear factor-4alpha. Diabetes 51: 910-914.
50. Matsuda M, Korn BS, Hammer RE, Moon YA, Komuro R, et al. (2001) SREBP cleavage-activating protein (SCAP) is required for increased lipid synthesis in liver induced by cholesterol deprivation and insulin elevation. Genes Dev 15: 1206-1216.
51. Wheatcroft SB, Kearney MT, Shah AM, Ezzat VA, Miell JR, et al. (2007) IGF-binding protein-2 protects against the development of obesity and insulin resistance. Diabetes 56: 285-294.
52. Lam NT, Covey SD, Lewis JT, Oosman S, Webber T, et al. (2006) Leptin resistance following over-expression of protein tyrosine phosphatase 1B in liver. J Mol Endocrinol 36: 163-174.
53. Gummesson A, Jernas M, Svensson PA, Larsson I, Glad CA, et al. (2007) Relations of adipose tissue CIDEA gene expression to basal metabolic rate, energy restriction, and obesity: population-based and dietary intervention studies. J Clin Endocrinol Metab 92: 4759-4765.
54. Dahlman I, Kaaman M, Jiao H, Kere J, Laakso M, et al. (2005) The CIDEA gene V115F polymorphism is associated with obesity in Swedish subjects. Diabetes 54: 3032-3034.
55. Zhou Z, Yon Toh S, Chen Z, Guo K, Ng CP, et al. (2003) Cidea-deficient mice have lean phenotype and are resistant to obesity. Nat Genet 35: 49-56.
56. Bibikova M, Lin Z, Zhou L, Chudin E, Garcia EW, et al. (2006) High-throughput DNA methylation profiling using universal bead arrays. Genome Res 16: 383-393.
57. Stanhill A, Haynes CM, Zhang Y, Min G, Steele MC, et al. (2006) An arsenite-inducible 19S regulatory particle-associated protein adapts proteasomes to proteotoxicity. Mol Cell 23: 875-885.
58. Min KW, Kwon MJ, Park HS, Park Y, Yoon SK, et al. (2005) CAND1 enhances deneddylation of CUL1 by COP9 signalosome. Biochem Biophys Res Commun 334: 867-874.
59. Kurz T, Ozlu N, Rudolf F, O'Rourke SM, Luke B, et al. (2005) The conserved protein DCN-1/Dcn1p is required for cullin neddylation in C. elegans and S. cerevisiae. Nature 435: 1257-1261.
60. Eisenhaber F, Wechselberger C, Kreil G (2001) The Brix domain protein family - a key to the ribosomal biogenesis pathway? Trends Biochem Sci 26: 345-347.
61. Reiss U, Oskouian B, Zhou J, Gupta V, Sooriyakumaran P, et al. (2004) Sphingosine-phosphate lyase enhances stress-induced ceramide generation and apoptosis. J Biol Chem 279: 1281-1290.