-
1
-
-
0014945567
-
-
0022-2836,. 10.1016/0022-2836(70)90074-4
-
A. D. Riggs, S. Bourgeois, and M. Cohn, J. Mol. Biol. 0022-2836 53, 401 (1970). 10.1016/0022-2836(70)90074-4
-
(1970)
J. Mol. Biol.
, vol.53
, pp. 401
-
-
Riggs, A.D.1
Bourgeois, S.2
Cohn, M.3
-
2
-
-
0019887628
-
-
0006-2960,. 10.1021/bi00527a028
-
O. G. Berg, R. B. Winter, and P. H. von Hippel, Biochemistry 0006-2960 20, 6929 (1981). 10.1021/bi00527a028
-
(1981)
Biochemistry
, vol.20
, pp. 6929
-
-
Berg, O.G.1
Winter, R.B.2
Von Hippel, P.H.3
-
4
-
-
4444236055
-
Kinetics of target localization of a protein on DNA: A stochastic approach
-
DOI 10.1529/biophysj.104.045773
-
M. Coppey, O. B́nichou, R. Voiturez, and M. Moreau, Biophys. J. 0006-3495 87, 1640 (2004). 10.1529/biophysj.104.045773 (Pubitemid 39167021)
-
(2004)
Biophysical Journal
, vol.87
, Issue.3
, pp. 1640-1649
-
-
Coppey, M.1
Benichou, O.2
Voituriez, R.3
Moreau, M.4
-
5
-
-
3042579602
-
How do site-specific DNA-binding proteins find their targets?
-
DOI 10.1093/nar/gkh624
-
S. E. Halford and J. F. Marko, Nucleic Acids Res. 0305-1048 32, 3040 (2004). 10.1093/nar/gkh624 (Pubitemid 39022995)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.10
, pp. 3040-3052
-
-
Halford, S.E.1
Marko, J.F.2
-
6
-
-
33645816459
-
-
0006-3495,. 10.1529/biophysj.105.078162
-
T. Hu, A. Y. Grosberg, and B. I. Shklovskii, Biophys. J. 0006-3495 90, 2731 (2006). 10.1529/biophysj.105.078162
-
(2006)
Biophys. J.
, vol.90
, pp. 2731
-
-
Hu, T.1
Grosberg, A.Y.2
Shklovskii, B.I.3
-
7
-
-
33745781658
-
Facilitated diffusion of DNA-binding proteins: Simulation of large systems
-
DOI 10.1063/1.2211614
-
H. Merlitz, K. V. Klenin, C. X. Wu, and J. Langowski, J. Chem. Phys. 0021-9606 125, 014906 (2006). 10.1063/1.2211614 (Pubitemid 44025520)
-
(2006)
Journal of Chemical Physics
, vol.125
, Issue.1
, pp. 014906
-
-
Merlitz, H.1
Klenin, K.V.2
Wu, C.-X.3
Langowski, J.4
-
8
-
-
10044223573
-
Kinetics of protein-DNA interaction: Facilitated target location in sequence-dependent potential
-
DOI 10.1529/biophysj.104.050765
-
M. Slutsky and L. A. Mirny, Biophys. J. 0006-3495 87, 4021 (2004). 10.1529/biophysj.104.050765 (Pubitemid 39602906)
-
(2004)
Biophysical Journal
, vol.87
, Issue.6
, pp. 4021-4035
-
-
Slutsky, M.1
Mirny, L.A.2
-
9
-
-
0003064682
-
-
in, edited by A. Rich and N. Davidson (Freeman, San Francisco)
-
G. Adam and M. Delbruck, in Structural Chemistry and Molecular Biology, edited by, A. Rich, and, N. Davidson, (Freeman, San Francisco, 1968), pp. 198-215.
-
(1968)
Structural Chemistry and Molecular Biology
, pp. 198-215
-
-
Adam, G.1
Delbruck, M.2
-
11
-
-
34249932435
-
Probing transcription factor dynamics at the single-molecule level in a living cell
-
DOI 10.1126/science.1141967
-
J. Elf, G. W. Li, and X. S. Xie, Science 0036-8075 316, 1191 (2007). 10.1126/science.1141967 (Pubitemid 46877481)
-
(2007)
Science
, vol.316
, Issue.5828
, pp. 1191-1194
-
-
Elf, J.1
Li, G.-W.2
Xie, X.S.3
-
12
-
-
47249153641
-
Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA
-
DOI 10.1093/nar/gkn376
-
I. Bonnet, A. Biebricher, P. -L. Port́, C. Loverdo, O. B́nichou, R. Voituriez, C. Escud́, W. Wende, A. Pingoud, and P. Desbiolles, Nucleic Acids Res. 0305-1048 36, 4118 (2008). 10.1093/nar/gkn376 (Pubitemid 351984827)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.12
, pp. 4118-4127
-
-
Bonnet, I.1
Biebricher, A.2
Porte, P.3
Loverdo, C.4
Benichou, O.5
Voituriez, R.6
Escude, C.7
Wende, W.8
Pingoud, A.9
Desbiolles, P.10
-
13
-
-
44949217503
-
-
1089-5647,. 10.1021/jp077568f
-
B. Bagchi, P. C. Blainey, and X. S. Sie, J. Phys. Chem. B 1089-5647 112, 6282 (2008). 10.1021/jp077568f
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 6282
-
-
Bagchi, B.1
Blainey, P.C.2
Sie, X.S.3
-
14
-
-
33645807371
-
-
0027-8424,. 10.1073/pnas.0509723103
-
P. C. Blainey, A. M. van Oijen, A. Banerjee, G. L. Verdine, and X. S. Xie, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 103, 5752 (2006). 10.1073/pnas.0509723103
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 5752
-
-
Blainey, P.C.1
Van Oijen, A.M.2
Banerjee, A.3
Verdine, G.L.4
Xie, X.S.5
-
15
-
-
46749108829
-
-
0006-3495,. 10.1529/biophysj.108.134122
-
A. Tafvizi, F. Huang, J. S. Leith, A. R. Fersht, L. A. Mirny, and A. M. van Oijen, Biophys. J. 0006-3495 95, L01 (2008). 10.1529/biophysj.108.134122
-
(2008)
Biophys. J.
, vol.95
, pp. 01
-
-
Tafvizi, A.1
Huang, F.2
Leith, J.S.3
Fersht, A.R.4
Mirny, L.A.5
Van Oijen, A.M.6
-
16
-
-
33746649820
-
Single molecule measurements of repressor protein 1D diffusion on DNA
-
DOI 10.1103/PhysRevLett.97.048302
-
Y. M. Wang, R. H. Austin, and E. C. Cox, Phys. Rev. Lett. 0031-9007 97, 048302 (2006). 10.1103/PhysRevLett.97.048302 (Pubitemid 44147316)
-
(2006)
Physical Review Letters
, vol.97
, Issue.4
, pp. 048302
-
-
Wang, Y.M.1
Austin, R.H.2
Cox, E.C.3
-
17
-
-
58849148610
-
-
0006-3495,. 10.1016/j.bpj.2008.09.040
-
Y. Wang, L. Guo, I. Golding, E. C. Cox, and N. P. Ong, Biophys. J. 0006-3495 96, 609 (2009). 10.1016/j.bpj.2008.09.040
-
(2009)
Biophys. J.
, vol.96
, pp. 609
-
-
Wang, Y.1
Guo, L.2
Golding, I.3
Cox, E.C.4
Ong, N.P.5
-
18
-
-
0037451299
-
Protein motion from non-specific to specific DNA by three-dimensional routes aided by supercoiling
-
DOI 10.1093/emboj/cdg125
-
D. M. Gowers and S. E. Halford, EMBO J. 0261-4189 22, 1410 (2003). 10.1093/emboj/cdg125 (Pubitemid 36362704)
-
(2003)
EMBO Journal
, vol.22
, Issue.6
, pp. 1410-1418
-
-
Gowers, D.M.1
Halford, S.E.2
-
19
-
-
27644460480
-
Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA
-
DOI 10.1073/pnas.0505378102
-
D. M. Gowers, G. G. Wilson, and S. E. Halford, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 102, 15883 (2005). 10.1073/pnas.0505378102 (Pubitemid 41552837)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.44
, pp. 15883-15888
-
-
Gowers, D.M.1
Wilson, G.G.2
Halford, S.E.3
-
20
-
-
58149527533
-
-
0021-9606,. 10.1063/1.3050097
-
A. -M. Florescu and M. Joyeux, J. Chem. Phys. 0021-9606 130, 015103 (2009). 10.1063/1.3050097
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 015103
-
-
Florescu, A.-M.1
Joyeux, M.2
-
21
-
-
0031234623
-
A combined wormlike-chain and bead model for dynamic simulations of long linear DNA
-
DOI 10.1006/jcph.1997.5765, PII S002199919795765X
-
H. Jian, A. Vologodskii, and T. Schlick, J. Comput. Phys. 0021-9991 136, 168 (1997). 10.1006/jcph.1997.5765 (Pubitemid 127170097)
-
(1997)
Journal of Computational Physics
, vol.136
, Issue.1
, pp. 168-179
-
-
Jian, H.1
Vologodskii, A.V.2
Schlick, T.3
-
22
-
-
33846591083
-
Effective charge of bovine serum albumin determined by electrophoresis NMR
-
DOI 10.1016/j.cplett.2006.12.068, PII S000926140601894X
-
U. Böhme and U. Scheler, Chem. Phys. Lett. 0009-2614 435, 342 (2007). 10.1016/j.cplett.2006.12.068 (Pubitemid 46176840)
-
(2007)
Chemical Physics Letters
, vol.435
, Issue.4-6
, pp. 342-345
-
-
Bohme, U.1
Scheler, U.2
-
23
-
-
0029016182
-
-
0036-8075,. 10.1126/science.7761829
-
B. Honig and A. Nicholls, Science 0036-8075 268, 1144 (1995). 10.1126/science.7761829
-
(1995)
Science
, vol.268
, pp. 1144
-
-
Honig, B.1
Nicholls, A.2
-
24
-
-
0017389770
-
-
0006-3525,. 10.1002/bi1977.360160705
-
D. Stigter, Biopolymers 0006-3525 16, 1435 (1977). 10.1002/bip.1977. 360160705
-
(1977)
Biopolymers
, vol.16
, pp. 1435
-
-
Stigter, D.1
-
26
-
-
66649116808
-
-
0031-9007,. 10.1103/PhysRevLett.102.228101
-
V. Dahirel, F. Paillusson, M. Jardat, M. Barbi and J. M. Victor, Phys. Rev. Lett. 0031-9007 102, 228101 (2009). 10.1103/PhysRevLett.102.228101
-
(2009)
Phys. Rev. Lett.
, vol.102
, pp. 228101
-
-
Dahirel, V.1
Paillusson, F.2
Jardat, M.3
Barbi, M.4
Victor, J.M.5
-
27
-
-
0033574510
-
Protein-DNA interactions: A structural analysis
-
DOI 10.1006/jmbi.1999.2659
-
S. Jones, P. van Heyningen, H. M. Berman, and J. M. Thornton, J. Mol. Biol. 0022-2836 287, 877 (1999). 10.1006/jmbi.1999.2659 (Pubitemid 29188875)
-
(1999)
Journal of Molecular Biology
, vol.287
, Issue.5
, pp. 877-896
-
-
Jones, S.1
Van Heyningen, P.2
Berman, H.M.3
Thornton, J.M.4
-
28
-
-
58149345492
-
-
0022-2836,. 10.1016/j.jmb.2008.11.016
-
O. Givaty and Y. Levy, J. Mol. Biol. 0022-2836 385, 1087 (2009). 10.1016/j.jmb.2008.11.016
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 1087
-
-
Givaty, O.1
Levy, Y.2
-
30
-
-
84933517499
-
-
0021-9606,. 10.1063/1.1670977
-
J. Rotne and S. Prager, J. Chem. Phys. 0021-9606 50, 4831 (1969). 10.1063/1.1670977
-
(1969)
J. Chem. Phys.
, vol.50
, pp. 4831
-
-
Rotne, J.1
Prager, S.2
-
32
-
-
0032827044
-
Calculation of hydrodynamic properties of macromolecular bead models with overlapping spheres
-
DOI 10.1007/s002490050233
-
B. Carrasco, J. G. de la Torre, and P. Zipper, Eur. Biophys. J. 0175-7571 28, 510 (1999). 10.1007/s002490050233 (Pubitemid 29431755)
-
(1999)
European Biophysics Journal
, vol.28
, Issue.6
, pp. 510-515
-
-
Carrasco, B.1
De La Torre, J.G.2
Zipper, P.3
-
33
-
-
33745738426
-
Flexible histone tails in a new mesoscopic oligonucleosome model
-
DOI 10.1529/biophysj.106.083006
-
G. Arya, Q. Zhang, and T. Schlick, Biophys. J. 0006-3495 91, 133 (2006). 10.1529/biophysj.106.083006 (Pubitemid 44015314)
-
(2006)
Biophysical Journal
, vol.91
, Issue.1
, pp. 133-150
-
-
Arya, G.1
Zhang, Q.2
Schlick, T.3
-
34
-
-
5844278702
-
-
0024-9297,. 10.1021/ma00158a043
-
M. Fixman, Macromolecules 0024-9297 19, 1204 (1986). 10.1021/ma00158a043
-
(1986)
Macromolecules
, vol.19
, pp. 1204
-
-
Fixman, M.1
-
35
-
-
0034247779
-
Hydrodynamic interactions in long chain polymers: Application of the Chebyshev polynomial approximation in stochastic simulations
-
DOI 10.1063/1.1305884
-
R. M. Jendrejack, M. D. Graham, and J. J. de Pablo, J. Chem. Phys. 0021-9606 113, 2894 (2000). 10.1063/1.1305884 (Pubitemid 30917793)
-
(2000)
Journal of Chemical Physics
, vol.113
, Issue.7
, pp. 2894-2900
-
-
Jendrejack, R.M.1
Graham, M.D.2
De Pablo, J.J.3
-
36
-
-
0000002071
-
-
0021-9606,. 10.1063/1.481371
-
D. A. Beard and T. Schlick, J. Chem. Phys. 0021-9606 112, 7323 (2000). 10.1063/1.481371
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 7323
-
-
Beard, D.A.1
Schlick, T.2
-
39
-
-
0001327377
-
-
0022-4715,. 10.1007/BF01023647
-
A. M. Berezhkovskii, Yu. A. Makhnovskii, and R. A. Suris, J. Stat. Phys. 0022-4715 57, 333 (1989). 10.1007/BF01023647
-
(1989)
J. Stat. Phys.
, vol.57
, pp. 333
-
-
Berezhkovskii, A.M.1
Makhnovskii, Yu.A.2
Suris, R.A.3
-
40
-
-
33644885029
-
Physical nature of bacterial cytoplasm
-
DOI 10.1103/PhysRevLett.96.098102, 098102
-
I. Golding and E. C. Cox, Phys. Rev. Lett. 0031-9007 96, 098102 (2006). 10.1103/PhysRevLett.96.098102 (Pubitemid 43385256)
-
(2006)
Physical Review Letters
, vol.96
, Issue.9
, pp. 1-4
-
-
Golding, I.1
Cox, E.C.2
-
41
-
-
37749053173
-
-
0006-3495,. 10.1529/biophysj.107.117044
-
G. Guigas and M. Weiss, Biophys. J. 0006-3495 94, 90 (2008). 10.1529/biophysj.107.117044
-
(2008)
Biophys. J.
, vol.94
, pp. 90
-
-
Guigas, G.1
Weiss, M.2
-
42
-
-
0034640133
-
Anomalous diffusion of fluorescent probes inside living cell investigated by spatially-resolved fluorescence correlation spectroscopy
-
DOI 10.1006/jmbi.2000.3692
-
M. Wachsmuth, W. Waldeck, and J. Langowski, J. Mol. Biol. 0022-2836 298, 677 (2000). 10.1006/jmbi.2000.3692 (Pubitemid 30694244)
-
(2000)
Journal of Molecular Biology
, vol.298
, Issue.4
, pp. 677-689
-
-
Wachsmuth, M.1
Waldeck, W.2
Langowski, J.3
-
43
-
-
56149096707
-
-
0370-1573,. 10.1016/S0370-1573(00)00070-3
-
R. Metzler and J. Klafter, Phys. Rep. 0370-1573 339, 1 (2000). 10.1016/S0370-1573(00)00070-3
-
(2000)
Phys. Rep.
, vol.339
, pp. 1
-
-
Metzler, R.1
Klafter, J.2
-
44
-
-
0036789619
-
-
0378-4371,. 10.1016/S0378-4371(02)01038-5
-
R. F. Bruinsma, Physica A 0378-4371 313, 211 (2002). 10.1016/S0378- 4371(02)01038-5
-
(2002)
Physica A
, vol.313
, pp. 211
-
-
Bruinsma, R.F.1
-
45
-
-
0029938053
-
-
0036-8075,. 10.1126/science.271.5253.1247
-
M. Lewis, G. Chang, N. C. Horton, M. A. Kercher, H. C. Pace, M. A. Schumacher, R. G. Brennan, and P. Lu, Science 0036-8075 271, 1247 (1996). 10.1126/science.271.5253.1247
-
(1996)
Science
, vol.271
, pp. 1247
-
-
Lewis, M.1
Chang, G.2
Horton, N.C.3
Kercher, M.A.4
Pace, H.C.5
Schumacher, M.A.6
Brennan, R.G.7
Lu, P.8
-
46
-
-
0004044135
-
-
(Clarendon, Oxford)
-
J. des Cloizeaux and G. Jannink, Polymers in Solution, their Modeling and Structure (Clarendon, Oxford, 1990), pp. 415-417.
-
(1990)
Polymers in Solution, Their Modeling and Structure
, pp. 415-417
-
-
Des Cloizeaux, J.1
Jannink, G.2
-
47
-
-
0019886927
-
-
0006-2960,. 10.1021/bi00516a026
-
M. D. Barkley, Biochemistry 0006-2960 20, 3833 (1981). 10.1021/bi00516a026
-
(1981)
Biochemistry
, vol.20
, pp. 3833
-
-
Barkley, M.D.1
-
48
-
-
0019867850
-
-
0006-2960,. 10.1021/bi00527a030
-
R. B. Winter, O. G. Berg, and P. H. von Hippel, Biochemistry 0006-2960 20, 6961 (1981). 10.1021/bi00527a030
-
(1981)
Biochemistry
, vol.20
, pp. 6961
-
-
Winter, R.B.1
Berg, O.G.2
Von Hippel, P.H.3
-
49
-
-
0030845303
-
Comparison of the DNA association kinetics of the Lacy repressor tetramet, its dimeric mutant LacI(adi), and the native dimeric gal repressor
-
DOI 10.1074/jbc.272.35.22092
-
M. Hsieh and M. Brenowitz, J. Biol. Chem. 0021-9258 272, 22092 (1997). 10.1074/jbc.272.35.22092 (Pubitemid 27382836)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.35
, pp. 22092-22096
-
-
Hsieh, M.1
Brenowitz, M.2
-
50
-
-
0029873697
-
Rapid, electrostatically assisted association of proteins
-
DOI 10.1038/nsb0596-427
-
G. Schreiber and A. R. Fersht, Nat. Struct. Biol. 1072-8368 3, 427 (1996). 10.1038/nsb0596-427 (Pubitemid 26139441)
-
(1996)
Nature Structural Biology
, vol.3
, Issue.5
, pp. 427-431
-
-
Schreiber, G.1
Fersht, A.R.2
-
51
-
-
0345701261
-
Thermodynamic consequences of bipartite immunity protein binding to the ribosomal ribonuclease colicin E3
-
DOI 10.1021/bi0273720
-
D. Walker, G. R. Moore, R. James, and C. Kleanthous, Biochemistry 0006-2960 42, 4161 (2003). 10.1021/bi0273720 (Pubitemid 36418309)
-
(2003)
Biochemistry
, vol.42
, Issue.14
, pp. 4161-4171
-
-
Walker, D.1
Moore, G.R.2
James, R.3
Kleanthous, C.4
-
54
-
-
0023645192
-
-
0022-2836,. 10.1016/0022-2836(87)90517-1
-
J. G. Kim, Y. Takeda, B. W. Matthiews, and W. F. Anderson, J. Mol. Biol. 0022-2836 196, 149 (1987). 10.1016/0022-2836(87)90517-1
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 149
-
-
Kim, J.G.1
Takeda, Y.2
Matthiews, B.W.3
Anderson, W.F.4
-
55
-
-
0024295009
-
-
0006-2960,. 10.1021/bi00404a003
-
C. Kleinschmidt, K. Tovar, W. Hillen, and D. Porschke, Biochemistry 0006-2960 27, 1094 (1988). 10.1021/bi00404a003
-
(1988)
Biochemistry
, vol.27
, pp. 1094
-
-
Kleinschmidt, C.1
Tovar, K.2
Hillen, W.3
Porschke, D.4
-
57
-
-
0026767458
-
-
0021-9258.
-
P. A. Gottlieb, S. Wu, X. Zhang, M. Tecklenburg, P. Kuempel, and T. M. Hill, J. Biol. Chem. 0021-9258 267, 7434 (1992).
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 7434
-
-
Gottlieb, P.A.1
Wu, S.2
Zhang, X.3
Tecklenburg, M.4
Kuempel, P.5
Hill, T.M.6
-
58
-
-
0030985132
-
Rapid-reaction analysis of plasmid DNA cleavage by the EcoRV restriction endonuclease
-
DOI 10.1021/bi970155s
-
S. G. Erskine, G. S. Baldwin, and S. E. Halford, Biochemistry 0006-2960 36, 7567 (1997). 10.1021/bi970155s (Pubitemid 27262383)
-
(1997)
Biochemistry
, vol.36
, Issue.24
, pp. 7567-7576
-
-
Erskine, S.G.1
Baldwin, G.S.2
Halford, S.E.3
-
59
-
-
0032555294
-
DNA excision by the SfiI restriction endonuclease
-
DOI 10.1006/jmbi.1998.1966
-
T. J. Nobbs, M. D. Szczelkun, L. M. Wentzell, and S. E. Halford, J. Mol. Biol. 0022-2836 281, 419 (1998). 10.1006/jmbi.1998.1966 (Pubitemid 28372120)
-
(1998)
Journal of Molecular Biology
, vol.281
, Issue.3
, pp. 419-432
-
-
Nobbs, T.J.1
Szczelkun, M.D.2
Wentzell, L.M.3
Halford, S.E.4
-
60
-
-
65549171477
-
-
0300-5127,. 10.1042/BST0370343
-
S. E. Halford, Biochem. Soc. Trans. 0300-5127 37, 343 (2009). 10.1042/BST0370343
-
(2009)
Biochem. Soc. Trans.
, vol.37
, pp. 343
-
-
Halford, S.E.1
|