Metabolomics data exploration guided by prior knowledge

Analytica Chimica Acta

Volumn 651, Issue 2, 2009, Pages 173-181

  van den Berg, Robert A ^a,b   Rubingh, Carina M ^a   Westerhuis, Johan A ^c   van der Werf, Mariët J ^a   Smilde, Age K ^c  

^a TNO   (Netherlands)

^b UNIVERSITY OF LEUVEN   (Belgium)

^c UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

Canonical correlation analysis; Metabolomics; Microbiology; Multiblock analysis; Principal component analysis

Indexed keywords

AMINO ACID METABOLISM; AROMATIC AMINO ACID; BIOLOGICAL INTERPRETATION; BIOSYNTHESIS PATHWAYS; CANONICAL CORRELATION ANALYSIS; COMPLEMENTARY DATA; DATA ANALYSIS; DATA SETS; E. COLI; ENVIRONMENTAL CONDITIONS; GLUCOSE-GROWN CELLS; METABOLITE CONCENTRATIONS; METABOLOMES; METABOLOMICS; METABOLOMICS DATA; MULTIBLOCK ANALYSIS; PRIOR KNOWLEDGE; PSEUDOMONAS PUTIDA; SPECIFIC AREAS; WILD TYPES;

AMINATION; AMINES; AMINO ACIDS; BIOCHEMISTRY; BIOMOLECULES; BIOSYNTHESIS; ESCHERICHIA COLI; GLUCOSE; METABOLISM; METABOLITES; MICROORGANISMS; ORGANIC ACIDS; SET THEORY;

PRINCIPAL COMPONENT ANALYSIS;

AMINO ACID; PHENYLALANINE; PHOSPHATE; TRYPTOPHAN;

AMINO ACID SYNTHESIS; ARTICLE; BACTERIAL STRAIN; BACTERIUM CULTURE; ESCHERICHIA COLI; METABOLITE; METABOLOME; METABOLOMICS; NONHUMAN; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PSEUDOMONAS PUTIDA; SCORING SYSTEM; WILD TYPE;

ESCHERICHIA COLI; METABOLOME; METABOLOMICS; PHENYLALANINE; PRINCIPAL COMPONENT ANALYSIS; PSEUDOMONAS PUTIDA;

ESCHERICHIA COLI; PSEUDOMONAS PUTIDA;

EID: 70349267961     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2009.08.029     Document Type: Article

References (20)

1. Jackson J.E. A User's Guide to Principal Components (1991), John Wiley & Sons, Inc.
2. Jolliffe I.T. Principal Component Analysis. second ed. (2002), Springer-Verlag, New York
3. Kaufman L., and Rousseeuw P.J. Finding Groups in Data: An Introduction to Cluster Analysis (1990), Wiley-Interscience
4. Eisen M.B., Spellman P.T., Brown P.O., and Botstein D. Proc. Natl. Acad. Sci. U.S.A. 95 (1998) 14863-14868
5. Geladi P., and Kowalski B.R. Anal. Chim. Acta 185 (1986) 1-17
6. Hoskuldsson A. J. Chemom. 2 (1988) 211-228
7. Hoogerbrugge R., Willig S.J., and Kistemaker P.G. Anal. Chem. 55 (1983) 1710-1712
8. Smilde A.K., Westerhuis J.A., and de Jong S. J. Chemom. 17 (2003) 323-337
9. Krzanowski W.J. Principles of Multivariate Analysis, a User's Perspective (1988), Oxford University Press Inc., New York
10. Van Deun K., Smilde A.K., van der Werf M.J., Kiers H.A.L., and Van Mechelen I. BMC Bioinformatics 10 (2009) 246
11. Pagès J. Food Qual. Pref. 16 (2005) 642-649
12. van den Berg R.A., Hoefsloot H.C.J., Westerhuis J.A., Smilde A.K., and van der Werf M.J. BMC Genomics 7 (2006) 142
13. Hartmans S., van der Werf M.J., and de Bont J.A.M. Appl. Environ. Microbiol. 56 (1990) 1347-1351
14. van der Werf M.J., Overkamp K.M., Muilwijk B., Koek M., Bianca, Jellema R.H., Coulier L., and Hankemeier T. Mol. Biosyst. 4 (2008) 315-327
15. Koek M., Muilwijk B., van der Werf M.J., and Hankemeier T. Anal. Chem. 78 (2006) 1272-1281
16. Coulier L., Bas R., Jespersen S., Verheij E., van der Werf M.J., and Hankemeier T. Anal. Chem. 78 (2006) 6573-6582
17. Smilde A.K., van der Werf M.J., Bijlsma S., van der Werff-van der Vat B.J.C., and Jellema R.H. Anal. Chem. 77 (2005) 6729-6736
18. Chang A., Scheer M., Grote A., Schomburg I., and Schomburg D. Nucleic Acids Res. 37 (2009) D588-D592
19. Kanehisa M., and Goto S. Nucleic Acids Res. 28 (2000) 27-30
20. Keseler I.M., Vides J.C., Castro S.G., Ingraham J.L., Paley S., Paulsen I.T., Gil M.P., and Karp P.D. Nucleic Acids Res. 33 (2005) D334-D337