Erratum: Allosteric β-propeller signalling in TolB and its manipulation by translocating colicins (EMBO Journal (2009) DOI: 10.1038/emboj.2009.224);Allosteric Β-propeller signalling in TolB and its manipulation by translocating colicins

EMBO Journal

Volumn 28, Issue 18, 2009, Pages 2846-2857

  Bonsor, Daniel A ^a,d   Hecht, Oliver ^b   Vankemmelbeke, Mireille ^c   Sharma, Amit ^a   Krachler, Anne Marie ^a   Housden, Nicholas G ^a   Lilly, Katie J ^a   James, Richard ^c   Moore, Geoffrey R ^b   Kleanthous, Colin ^a  

^a UNIVERSITY OF YORK   (United Kingdom)

^b UNIVERSITY OF EAST ANGLIA   (United Kingdom)

^c UNIVERSITY OF NOTTINGHAM   (United Kingdom)

^d BOSTON BIOMEDICAL RESEARCH INSTITUTE   (United States)

Author keywords

Intrinsic disorder; Periplasm; Signalling; Tol; Ton

Indexed keywords

COLICIN; GUANINE NUCLEOTIDE EXCHANGE FACTOR;

ALLOSTERISM; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL OUTER MEMBRANE; BACTERIOPHAGE; CONFORMATIONAL TRANSITION; CYTOPLASM; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN BINDING; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; SIGNAL TRANSDUCTION;

ESCHERICHIA COLI; GOSSWEILERODENDRON BALSAMIFERUM; NEGIBACTERIA; VERTEBRATA;

EID: 70349205369     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/emboj.2009.266     Document Type: Erratum

References (60)

1. Abergel C, Bouveret E, Claverie JM, Brown K, Rigal A, Lazdunski C, Benedetti H (1999) Structure of the Escherichia coli TolB protein determined by MAD methods at 1.95 A resolution. Structure 7: 1291-1300
2. Baboolal TG, Conroy MJ, Gill K, Ridley H, Visudtiphole V, Bullough PA, Lakey Jeremy H (2008) Colicin N binds to the periphery of its receptor and translocator, outer membrane protein F. Structure 16: 371-379
3. Bernadac A, Gavioli M, Lazzaroni JC, Raina S, Lloubes R (1998) Escherichia coli tol-pal mutants form outer membrane vesicles. J Bacteriol 180: 4872-4878
4. Bhatt S, Weingart C (2008) Identification of sodium chloride-regulated genes in Burkholderia cenocepacia. Curr Microbiol 56: 418-422
5. Bonsor DA, Grishkovskaya I, Dodson EJ, Kleanthous C (2007) Molecular mimicry enables competitive recruitment by a natively disordered protein. J Am Chem Soc 15: 4800-4807
6. Bouveret E, Benedetti H, Rigal A, Loret E, Lazdunski C (1999) In vitro characterization of peptidoglycan-associated lipoprotein (PAL)-pep-tidoglycan and PAL-TolB interactions. J Bacteriol 181: 6306-6311
7. Bouveret E, Derouiche R, Rigal A, Lloubes R, Lazdunski C, Benedetti H (1995) Peptidoglycan-associated lipoprotein-TolB interaction. A possible key to explaining the formation of contact sites between the inner and outer membranes of Escherichia coli. J Biol Chem 270: 11071-11077
8. Bouveret E, Rigal A, Lazdunski C, Benedetti H (1998) Distinct regions of the colicin A translocation domain are involved in the interaction with TolA and TolB proteins upon import into Escherichia coli. Mol Microbiol 27: 143-157
9. Braun V, EndriB F (2007) Energy-coupled outer membrane transport proteins and regulatory proteins. Biometals 20: 219-231
10. Cameron DE, Urbach JM, Mekalanos JJ (2008) A defined trans-poson mutant library and its use in identifying motility genes in Vibrio cholerae. Proc Natl Acad Sci USA 105: 8736-8741
11. Carr S, Penfold CN, Bamford V, James R, Hemmings AM (2000) The structure of TolB, an essential component of the tol-dependent translocation system, and its protein-protein interaction with the translocation domain of colicin E9. Structure 8: 57-66
12. Cascales E, Buchanan SK, Duche D, Kleanthous C, Lloubes R, Postle K, Riley M, Slatin S, Cavard D (2007) Colicin biology. Microbiol Mol Biol Rev 71: 158-229
13. Cascales E, Gavioli M, Sturgis JN, Lloubes R (2000) Proton motive force drives the interaction of the inner membrane TolA and outer membrane pal proteins in Escherichia coli. Mol Microbiol 38: 904-915
14. Cascales E, Lloubes R (2004) Deletion analyses of the peptidogly-can-associated lipoprotein Pal reveals three independent binding sequences including a TolA box. Mol Microbiol 51: 873-885
15. Cascales E, Lloubes R, Sturgis JN (2001) The TolQ-TolR proteins energize TolA and share homologies with the flagellar motor proteins MotA-MotB. Mol Microbiol 42: 795-807
16. Chaudhuri I, Söding J, Lupas AN (2008) Evolution of the beta-propeller fold. Proteins 71 : 795-803
17. Dubuisson JF, Vianney A, Lazzaroni JC (2002) Mutational analysis of the TolA C-terminal domain of Escherichia coli and genetic evidence for an interaction between TolA and TolB. J Bacteriol 184: 4620-4625
18. Duche D, Frenkian A, Prima V, Lloubes R (2006) Release of immunity protein requires functional endonuclease colicin import machinery. J Bacteriol 188: 8593-8600
19. Emsley P, Cowtan K (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60(Pt 12 Pt 1): 2126-2132
20. Fulop V, Jones DT (1999) Beta propellers: structural rigidity and functional diversity. Curr Opin Struct Biol 9: 715-721
21. Gerding MA, Ogata Y, Pecora ND, Niki H, de Boer PA (2007) The trans-envelope Tol-Pal complex is part of the cell division machinery and required for proper outer-membrane invagination during cell constriction in E. coli. Mol Microbiol 63: 1008-1025
22. Germon P, Ray MC, Vianney A, Lazzaroni JC (2001) Energy-dependent conformational change in the TolA protein of Escherichia coli involves its N-terminal domain, TolQ, and TolR. J Bacteriol 183: 4110-4114
23. Gokce I, Raggett EM, Hong Q, Virden R, Cooper A, Lakey JH (2000) ITC, SPR and stopped-flow fluorescence define a crucial 27-residue segment. J Mol Biol 304: 621-632
24. Hao Y, Macara IG (2008) Regulation of chromatin binding by a conformational switch in the tail of the Ran exchange factor RCC1. J Cell Biol 182: 827-836
25. Heilpern AJ, Waldor MK (2000) CTXphi infection of Vibrio cholerae requires the tolQRA gene products. J Bacteriol 182: 1739-1747
26. Housden NG, Loftus SR, Moore GR, James R, Kleanthous C (2005) Cell entry mechanism of enzymatic bacterial colicins: porin recruitment and the thermodynamics of receptor binding. Proc Natl Acad Sci USA 102: 13849-13854
27. Kampfenkel K, Braun V (1993) Membrane topologies of the TolQ and TolR proteins of Escherichia coli: inactivation of TolQ by a missense mutation in the proposed first transmembrane segment. J Bacteriol 175: 4485-4491
28. Kleanthous C, Kuhlmann UC, Pommer AJ, Ferguson N, Radford SE, Moore GR, James R, Hemmings AM (1999) Structural and mechanistic basis of immunity toward endonuclease colicins. Nat Struct Biol 6: 243-252
29. Kleanthous C, Walker D (2001) Immunity proteins: enzyme inhibitors that avoid the active site. Trends Biochem Sci 26: 624-631
30. Klebe C, Bischoff FR, Ponstingl H, Wittinghofer A (1995) Interaction of the nuclear GTP-binding protein Ran with its regulatory proteins RCC1 and RanGAP1. Biochemistry 34: 639-647
31. Kurisu G, Zakharov SD, Zhalnina MV, Bano S, Eroukova VY, Rokitskaya TI, Antonenko YN, Wiener MC, Cramer WA (2003) The structure of BtuB with bound colicin E3 R-domain implies a translocon. Nat Struct Biol 10: 948-954
32. Lazzaroni JC, Dubuisson JF, Vianney A (2002) The Tol proteins of Escherichia coli and their involvement in the translocation of group A colicins. Biochimie 84: 391-397
33. Lazzaroni JC, Fognini-Lefebvre N, Portalier R (1989) Cloning of the excC and excD genes involved in the release of periplasmic proteins by Escherichia coli K12. Mol Gen Genet 218: 460-464
34. Levengood-Freyermuth SK, Click EM, Webster RE (1993) Role of the carboxyl-terminal domain of TolA in protein import and integrity of the outer membrane. J Bacteriol 175: 222-228
35. Levengood SK, Beyer Jr WF., Webster RE (1991) TolA: a membrane protein involved in colicin uptake contains an extended helical region. Proc Natl Acad Sci USA 88: 5939-5943
36. Loftus SR, Walker D, Mate MJ, Bonsor DA, James R, Moore GR, Kleanthous C. (2006) Competitive recruitment of the periplasmic translocation portal TolB by a natively disordered domain of colicin E9. Proc Natl Acad Sci USA 103: 12353-12358
37. Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D Biol Crystallogr 53 (Pt 3): 240-255
38. Neer EJ, Smith TF (1996) G Protein heterodimers: new structures propel new questions. Cell 84: 175-178
39. Nemergut ME, Mizzen CA, Stukenberg T, Allis CD, Macara IG (2001) Chromatin docking and exchange activity enhancement of RCC1 by Histones H2A and H2B. Science 292: 1540-1543
40. Nikaido H (2003) Molecular basis of bacterial outer membrane permeability revisited. Microbiol Mol Biol Rev 67: 593-656
41. Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. In Methods in Enzymology, Carter Jr CW, Sweet RM (eds) Vol.276, 20, pp 307-326. New York: Academic Press
42. Pawelek PD, Croteau N, Ng-Thow-Hing C, Khursigara CM, Moiseeva N, Allaire M, Coulton JW (2006) Structure of TonB in complex with FhuA, E. coli outer membrane receptor. Science 312: 1399-1402
43. Penfold CN, Healy B, Housden NG, Boetzel R, Vankemmelbeke M, Moore GR, Kleanthous C, James R (2004) Flexibility in the receptor-binding domain of the enzymatic colicin E9 is required for toxicity against Escherichia coli cells. J Bacteriol 186: 4520-4527
44. Postle K, Larsen RA (2007) TonB-dependent energy transduction between outer and cytoplasmic membranes. Biometals 20: 453-465
45. Renault L, Kuhlmann J, Henkel A, Wittinghofer A (2001) Structural basis for guanine nucleotide exchange on Ran by the regulator of chromosome condensation (RCC1). Cell 105: 245-255
46. Wittinghofer A (1998) The 1.7 A crystal structure of the regulator of chromosome condensation (RCC1) reveals a seven-bladed propeller. Nature 392: 97-101
47. Riley MA, Kirkup BC (2004) Antibiotic-mediated antagonism leads to a bacterial game of rock-paper-scissors in vivo. Nature 428: 412-414
48. Ruiz N, Kahne D, Silhavy TJ (2006) Advances in understanding bacterial outer-membrane biogenesis. Nat Rev Microbiol 4: 57-66
49. Seino H, Hisamoto N, Uzawa S, Sekiguchi T, Nishimoto T (1992) DNA-binding domain of RCC1 protein is not essential for coupling mitosis with DNA replication. J Cell Sci 102: 393-400
50. Shultis DD, Purdy MD, Banchs CN, Wiener MC (2006) Outer membrane active transport: structure of the BtuB:TonB complex. Science 312: 1396-1399
51. Sturgis JN (2001) Organisation and evolution of the tol-pal gene cluster. J Mol Microbiol Biotechnol 3: 113-122
52. Tamayo R, Ryan SS, McCoy AJ, Gunn JS (2002) Identification and genetic characterization of PmrA-regulated genes and genes involved in polymyxin B resistance in Salmonella enterica Serovar typhimurium. Infect Immun 70: 6770-6778
53. Vankemmelbeke M, Zhang Y, Moore GR, Kleanthous C, Penfold CN, James R (2009) Energy dependent immunity protein release during tol-dependent nuclease colicin translocation. J Biol Chem 284: 18932-18941
54. Walburger A, Lazdunski C, Corda Y (2002) The Tol/Pal system function requires an interaction between the C-terminal domain of TolA and the N-terminal domain of TolB. Mol Microbiol 44: 695-708
55. Walker DC, Georgiou T, Pommer AJ, Walker D, Moore GR, Kleanthous C, James R (2002) Mutagenic scan of the H-N-H motif of colicin E9: implications for the mechanistic enzymology of colicins, homing enzymes and apoptotic endonucleases. Nucleic Acids Res 30: 3225-3234
56. Webster RE (1991) The tol gene products and the import of macro-molecules into Escherichia coli. Mol Microbiol 5: 1005-1011
57. Whiteley M, Gangera MG, Bumgarner RE, Parsek MR, Teitzel GM, Lory S, Greenberg EP (2001) Gene expression in Pseudomonas aeruginosa biofilms. Nature 413: 860-864
58. Wiener MC (2005) TonB-dependent outer membrane transport: going for Baroque? Curr Opin Struct Biol 15: 394-400
59. Yamashita E, Zhalnina MV, Zakharov SD, Sharma O, Cramer WA (2008) Crystal structures of the OmpF porin: function in a colicin translocon. EMBO J 27: 2171-2180
60. Zhang Y, Vankemmelbeke MN, Holland LE, Walker DC, James R, Penfold CN (2008) Investigating early events in receptor binding and translocation of colicin E9 using synchronized cell killing and proteolytic cleavage. J Bacteriol 190: 4342-4350