Quantifying the possible cross-reactivity risk of an HPV16 vaccine

Journal of Experimental Therapeutics and Oncology

Volumn 8, Issue 1, 2009, Pages 65-76

  Kanduc, Darja ^a  

^a UNIVERSITY OF BARI   (Italy)

Author keywords

HPV16 proteome; Human proteome; Similarity analysis; Vaccine related cross reactions; Viral versus human proteome overlapping

Indexed keywords

PROTEOME; WART VIRUS VACCINE;

AMINO ACID SEQUENCE; ARTICLE; CELL DIFFERENTIATION; CELL GROWTH; CONTROLLED STUDY; CROSS REACTION; HUMAN; HUMAN PAPILLOMAVIRUS TYPE 16; LEUKOCYTE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; VACCINATION;

CROSS REACTIONS; HUMAN PAPILLOMAVIRUS 16; HUMANS; PAPILLOMAVIRUS VACCINES; PROTEOME; VACCINATION;

EID: 70349132570     PISSN: 13594117     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (71)

1. www.cdc.gov/ vaccinesafety/
2. Oldstone MB. Molecular mimicry and immune-mediated diseases. Faseb J 1998;12:1255-1265
3. Wong WT, Carlomagno F, Druck T, et al. Evolutionary conservation of the EPS8 gene and its mapping to human chromosome 12q23-q24. Oncogene 1994;9:3057-3061 (Pubitemid 24296786)
4. Nagase T, Kikuno R, Hattori A, Kondo Y, Okumura K, Ohara O. Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. DNA Res 2000;7:347-355
5. Olsen D, Nagayoshi T, Fazio M, et al. Human laminin: cloning and sequence analysis of cDNAs encoding A, B1 and B2 chains, and expression of the corresponding genes in human skin and cultured cells. Lab Invest 1989;60:772-782
6. Ota T, Suzuki Y, Nishikawa T, et al. Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat Genet 2004;36:40-45 (Pubitemid 38056206)
7. Vieira SA, Deininger MW, Sorour A, et al. Transcription factor BACH2 is transcriptionally regulated by the BCR/ABL oncogene. Genes Chromosomes Cancer 2001;32:353-363 (Pubitemid 33055120)
8. Jin J, Cai Y, Yao T, et al. A mammalian chromatin remodeling complex with similarities to the yeast INO80 complex. J Biol Chem 2005;280:41207-41212 (Pubitemid 41832175)
9. Mabuchi H, Fujii H, Calin G, et al. Cloning and characterization of CLLD6, CLLD7, and CLLD8, novel candidate genes for leukemogenesis at chromosome 13q14, a region commonly deleted in B-cell chronic lymphocytic leukemia. Cancer Res 2001;61:2870-2877 (Pubitemid 32691928)
10. Scanlan MJ, Gout I, Gordon CM, et al. Humoral immunity to human breast cancer: antigen definition and quantitative analysis of mRNA expression. Cancer Immun 2001;1:4. (Pubitemid 38904411)
11. Zhang A, Yeung PL, Li CW, et al. Identification of a novel family of ankyrin repeats-containing cofactors for p160 nuclear receptor coactivators. J Biol Chem 2004;279:33799-33805 (Pubitemid 39063029)
12. Chen SH, Yang CY, Chen PF, et al. The complete cDNA and amino acid sequence of human apolipoprotein B-100. J Biol Chem 1986;261:12918-12921 (Pubitemid 17006854)
13. Wagner K, Mincheva A, Korn B, Lichter P, Poepperl H. Pbx4, a new Pbx family member on mouse chromosome 8 is expressed during spermatogenesis. Mech Dev 2001;103:127-131 (Pubitemid 32457914)
14. Daigo Y, Takayama I, Ward SM, Sanders KM, Fujino MA. Novel human and mouse genes encoding a shank-interacting protein and its upregulation in gastric fundus of W/WV mouse. J. Gastroenterol. Hepatol 2003;18:712-718 (Pubitemid 36791711)
15. Riazi MA, Brinkman-Mills P, Johnson A, et al. Identification of a putative regulatory subunit of a calcium-activated potassium channel in the dup(3q) syndrome region and a related sequence on 22q11.2. Genomics 1999;62:90-94
16. Chiang PW, Wang S, Smithivas P, et al. Identification and analysis of the human and murine putative chromatin structure regulator SUPT6H and Supt6h. Genomics 1996;34:328-333 (Pubitemid 26234728)
17. Nepomuceno RR, Henschen-Edman AH, Burgess WH, Tenner AJ. cDNA cloning and primary structure analysis of C1qR(P), the human C1q/MBL/SPA receptor that mediates enhanced phagocytosis in vitro. Immunity 1997;6:119-129
18. Totoki Y, Toyoda A, Takeda T, et al. Homo sapiens protein coding cDNA. Submitted (MAR-2005) to the EMBL/GenBank/ DDBJ databases.
19. Galiegue S, Jbilo O, Combes T, et al. Cloning and characterization of PRAX-1. A new protein that specifically interacts with the peripheral benzodiazepine receptor. J Biol Chem 1999;274:2938-2952 (Pubitemid 29075381)
20. Lahn BT, Tang ZL, Zhou J, et al. Previously uncharacterized histone acetyltransferases implicated in mammalian spermatogenesis. Proc Natl Acad Sci USA 2002;99:8707-8712 (Pubitemid 34693624)
21. Clark HF, Gurney AL, Abaya E, et al. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Genome Res 2003;13:2265-2270 (Pubitemid 37265992)
22. Zhen YY, Libotte T, Munck M, Noegel AA, Korenbaum E. NUANCE, a giant protein connecting the nucleus and actin cytoskeleton. J Cell Sci 2002;115:3207-3222 (Pubitemid 34905903)
23. Johnston H, Kneer J, Chackalaparampil I, Yaciuk P, Chrivia J. Identification of a novel SNF2/SWI2 protein family member, SRCAP, which interacts with CREB-binding protein. J Biol Chem 1999;274:16370-16376 (Pubitemid 29269348)
24. Koenig M, Monaco AP, Kunkel LM. The complete sequence of dystrophin predicts a rod-shaped cytoskeletal protein. Cell 1988;53:219-228 (Pubitemid 18139063)
25. Kikuno R, Nagase T, Ishikawa K, et al. Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. DNA Res 1999;6:197-205.
26. Crackower MA, Sinasac DS, Xia J, et al. Cloning and characterization of two cytoplasmic dynein intermediate chain genes in mouse and human. Genomics 1999;55:257-267 (Pubitemid 29096126)
27. The MGC Project Team The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res 2004;14:2121-2127
28. Meyerhardt JA, Look AT, Bigner SH, Fearon ER. Identification and characterization of neogenin, a DCC-related gene. Oncogene 1997;14:1129-1136 (Pubitemid 27141914)
29. Boucrot E, Henry T, Borg JP, Gorvel JP, Meresse S. The intracellular fate of Salmonella depends on the recruitment of kinesin. Science 2005;308:1174-1178 (Pubitemid 40696435)
30. Kertesz N, Samson J, Debacker C, Wu H, Labastie MC. Cloning and characterization of human and mouse SNRK sucrose non-fermenting protein (SNF-1)-related kinases. Gene 2002;294:13-24. (Pubitemid 35291009)
31. Sasada R, Ono Y, Taniyama Y, Shing Y, Folkman J, Igarashi K. Cloning and expression of cDNA encoding human betacellulin, a new member of the EGF family. Biochem Biophys Res Commun 1993;190:1173-1179 (Pubitemid 23207889)
32. Matuoka K, Miki H, Takahashi K, Takenawa T. A novel ligand for an SH3 domain of the adaptor protein Nck bears an SH2 domain and nuclear signaling motifs. Biochem Biophys Res Commun 1997;239:488-492 (Pubitemid 27488991)
33. Jilani A, Ramotar D, Slack C, et al. Molecular cloning of the human gene, PNKP, encoding a polynucleotide kinase 3'-phosphatase and evidence for its role in repair of DNA strand breaks caused by oxidative damage. J Biol Chem 1999;274:24176-24186 (Pubitemid 29390354)
34. Matsuoka S, Ballif BA, Smogorzewska A, et al. ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. Science 2007;316:1160-1166 (Pubitemid 46877472)
35. Fujita F, Taniguchi Y, Kato T, et al. Identification of NAP1, a regulatory subunit of IkappaB kinase-related kinases that potentiates NF-kappaB signaling. Mol Cell Biol 2003;23: 7780-7793 (Pubitemid 37271475)
36. Neufeld EJ, Skalnik DG, Lievens PMJ, Orkin SH. Human CCAAT displacement protein is homologous to the Drosophila homeoprotein, cut. Nat Genet 1992;1:50-55
37. Raabe T, Manley JL. A human homologue of the Escherichia coli DnaJ heat-shock protein. Nucleic Acids Res. 1991;19:6645-6655
38. Acampora D, D'Esposito M, Faiella A, et al. The human HOX gene family. Nucleic Acids Res 1989;17:10385-10402
39. Langbein L, Heid HW, Moll I, Franke WW. Molecular characterization of the body site-specific human epidermal cytokeratin 9: cDNA cloning, amino acid sequence, and tissue specificity of gene expression. Differentiation 1993;55:57-72. (Pubitemid 24006223)
40. Philipson LH, Hice RE, Schaefer K, et al. Sequence and functional expression in Xenopus oocytes of a human insulinoma and islet potassium channel. Proc Natl Acad Sci USA 1991;88:53-57 (Pubitemid 21914424)
41. Valiente M, Andres-Pons A, Gomar B, et al. Binding of PTEN to specific PDZ domains contributes to PTEN protein stability and phosphorylation by microtubule-associated serine/threonine kinases. J Biol Chem 2005;280:28936-28943 (Pubitemid 41161339)
42. Tominaga K, Johmura Y, Nishizuka M, Imagawa M. Fad24, a mammalian homolog of Noc3p, is a positive regulator in adipocyte differentiation. J Cell Sci 2004;117:6217-6226 (Pubitemid 40123985)
43. Huang Y, Zhou XM, Zhang PP, et al. Novel human cDNA clones with function of inhibiting cancer cell growth. Submitted (APR-2001) to the EMBL/GenBank/DDBJ databases.
44. Matsuda A, Suzuki Y, Honda G, et al. Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways. Oncogene 2003;22:3307-3318 (Pubitemid 36712943)
45. Nagase T, Nakayama M, Nakajima D, Kikuno R, Ohara O. Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. DNA Res 2001;8:85-95.
46. Nagase T, Kikuno R, Ohara O. Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. DNA Res 2001;8:179-187
47. Lefebvre S, Buerglen L, Reboullet S, et al. Identification and characterization of a spinal muscular atrophy-determining gene. Cell 1995;80:155-165
48. Edgar AJ, Milona MA. Expression of human specificity protein 8 (SP8) in osteoblasts. Submitted (OCT-2002) to the EMBL/ GenBank/DDBJ databases.
49. Debant A, Serra-Pages C, Seipel K, et al. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specifi-57c guanine nucleotide exchange factor domains. Proc Natl Acad Sci USA 1996;93:5466-5471 (Pubitemid 26159473)
50. Moniaux N, Junker WM, Singh AP, Jones AM, Batra SK. Characterization of human mucin MUC17. Complete coding sequence and organization. J Biol Chem 2006;281:23676-23685 (Pubitemid 44274143)
51. Nguyen TB, Manova K, Capodieci P, et al. Characterization and expression of mammalian cyclin b3, a prepachytene meiotic cyclin. J Biol Chem 2002;277:41960-41969 (Pubitemid 35257510)
52. Stenmark H, Vitale G, Ulrich O, Zerial M. Rabaptin-5 is a direct effector of the small GTPase Rab5 in endocytic membrane fusion. Cell 1995;83:423-432
53. Ross MT, Grafham DV, Coffey AJ, et al. The DNA sequence of the human X chromosome. Nature. 2005;434:325-337
54. Rush J, Moritz A, Lee KA, et al. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. Nat Biotechnol 2005;23:94-101. (Pubitemid 41724631)
55. Wunderle VM, Critcher R, Ashworth A, Goodfellow PN. Cloning and characterization of SOX5, a new member of the human SOX gene family. Genomics 1996;36:354-358 (Pubitemid 26307501)
56. Ramesh N, Anton IM, Hartwig JH, Geha RS. WIP, a protein associated with Wiskott-Aldrich syndrome protein, induces actin polymerization and redistribution in lymphoid cells. Proc Natl Acad Sci USA 1997;94:14671-14676 (Pubitemid 28041432)
57. Prades C, Arnould I, Annilo T, et al. The human ATP binding cassette gene ABCA13, located on chromosome 7p12.3, encodes a 5058 amino acid protein with an extracellular domain encoded in part by a 4.8-kb conserved exon. Cytogenet Genome Res 2002;98:160-168 (Pubitemid 37465010)
58. Noor A, Windpassinger C, Patel M, et al. CC2D2A, encoding a coiled-coil and C2 domain protein, causes autosomal-recessive mental retardation with retinitis pigmentosa. Am J Hum Genet 2008;82:1011-1018.
59. Sakai N, Inui K, Fujii N, et al. Krabbe disease: isolation and characterization of a full-length cDNA for human galactocerebrosidase. Biochem Biophys Res Commun 1994;198: 485-491 (Pubitemid 24178394)
60. Galaktionov KI, Beach D. Specific activation of cdc25 tyrosine phosphatases by B-type cyclins: evidence for multiple roles of mitotic cyclins. Cell 1991;67:1181-1194 (Pubitemid 121001530)
61. Walter DM, Paul KS, Waters MG. Purification and characterization of a novel 13 S hetero-oligomeric protein complex that stimulates in vitro Golgi transport. J Biol Chem 1998;273:29565-29576
62. Hästbacka J, de la Chapelle A, Mahtani MM, et al. The diastrophic dysplasia gene encodes a novel sulfate transporter: positional cloning by fine-structure linkage disequilibrium mapping. Cell 1994;78:1073-1087 (Pubitemid 24292334)
63. O'Neill RE, Palese P. NPI-1, the human homolog of SRP-1, interacts with influenza virus nucleoprotein. Virology 1995;206:116-125
64. Köhler M, Ansieau S, Prehn S, Leutz A, Haller H, Hartmann E. Cloning of two novel human importin-alpha subunits and analysis of the expression pattern of the importin-alpha protein family. FEBS Lett 1997;417:104-108 (Pubitemid 27490483)
65. Köhler M, Speck C, Christiansen M, et al. Evidence for distinct substrate specificities of importin alpha family members in nuclear protein import. Mol Cell Biol 1999;19:7782-7791 (Pubitemid 29493442)
66. Melis D, Havelaar AC, Verbeek E, et al. NPT4, a new microsomal phosphate transporter: mutation analysis in glycogen storage disease type Ic. J Inherit Metab Dis 2004;27:725-733 (Pubitemid 39433599)
67. Buyse IM, Shao G, Huang S. The retinoblastoma protein binds to RIZ, a zinc-finger protein that shares an epitope with the adenovirus E1A protein. Proc Natl Acad Sci USA 1995;92:4467-4471
68. Fattaey AR, Helin K, Dembski MS, et al. Characterization of the retinoblastoma binding proteins RBP1 and RBP2. Oncogene 1993;8:3149-3156 (Pubitemid 23312922)
69. Shiomi T, Harada YN, Saito T, Shiomi N, Okuno Y, Yamaizumi M. An ERCC5 gene with homology to yeast RAD2 is involved in group G Xeroderma pigmentosum. Mutat Res 1994;314: 167-175 (Pubitemid 24082914)
70. Heisterkamp N, Groffen J, Warburton D, Sneddon TP. The human gamma-glutamyltransferase gene family. Hum Genet 2008;123:321-332
71. Mural RJ, Istrail S, Sutton G, et al. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.