Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins

DNA Research

Volumn 8, Issue 4, 2001, Pages 179-187

  Nagase, Takahiro ^a   Kikuno, Reiko ^a   Ohara, Osamu ^a  

^a KAZUSA DNA RESEARCH INSTITUTE   (Japan)

Author keywords

Brain; cDNA sequencing; Expression profile; In vitro transcription translation; Large proteins

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; NERVE PROTEIN;

ADULT; AMYGDALOID NUCLEUS; ARTICLE; BRAIN; CLASSIFICATION; FETUS; GENE EXPRESSION PROFILING; GENETICS; HUMAN; METABOLISM; MOLECULAR CLONING;

ADULT; AMYGDALA; BRAIN; CLONING, MOLECULAR; DNA, COMPLEMENTARY; FETUS; GENE EXPRESSION PROFILING; HUMANS; NERVE TISSUE PROTEINS; RNA, MESSENGER;

EID: 0035980104     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/8.4.179     Document Type: Article

References (25)

1. Venter, J. C., Adams, M. D., Myers, E. W. et al. 2001, The sequence of the human genome, Science, 291, 1304-1351.
2. International Human Genome Sequencing Consortium. 2001, Initial sequencing and analysis of the human genome, Nature, 409, 860-921.7.
3. Strausberg, R. L., Feingold, E. A., Klausner, R. D., and Collins, F. S. 1999. The mammalian gene collection, Science, 286, 455-457.
4. Wiemann, S., Weil, B., Wellenreuther, R. et al. 2001, Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs, Genome Res., 11, 422-435.
5. Nomura, N., Miyajima, N., Sazuka, T. et al. 1994, Prediction of the coding sequences of unidentified human genes. I. The coding sequences of 40 new genes (K1AA0001-KIAA0040) deduced by analysis of randomly sampled cDNA clones from human immature myeloid cell line KG-1, DNA Res., 1, 27-35.
6. Nagase, T., Nakayama, M., Nakajima, D., Kikuno, R., and Ohara, O. 2001, Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro, DNA Res., 8, 85-95.
7. Ohara, O., Nagase, T., Ishikawa, K.-I. et al. 1997, Construction and characterization of human brain cDNA libraries suitable for analysis of cDNA clones encoding relatively large proteins, DNA Res., 4, 53-59.
8. Hirosawa, M., Nagase, T., Murahashi, Y., Kikuno, R., and Ohara, O. 2001, Identification of novel transcribed sequences on human chromosome 22 by expressed sequence tag mapping, DNA Res., 8, 1-9.
9. Burge, C. and Karlin, S. 1997, Prediction of complete gene structures in human genomic DNA, J. Mol. Biol., 268, 78-94.
10. Hirosawa, M., Nagase, T., Ishikawa, K.-I., Kikuno, R., Nomura, N., and Ohara, O. 1999, Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain, DNA Res., 6, 329-336.
11. Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Rapp, B. A., and Wheeler, D. L. 2000, GenBank, Nucleic Acids Res., 28, 15-18.
12. Borodovsky, M., McIninch, J. D., Koonin, E. V., Rudd, K. E., Medigue, C., and Danchin, A. 1995, Detection of new genes in a bacterial genome using Markov Models for three gene classes, Nucleic Acids Res., 23, 3554-3562.
13. Hirosawa, M., Ishikawa, K.-I, Nagase, T., and Ohara, O. 2000, Detection of spurious interruptions of protein-coding regions in cloned cDNA sequences by GeneMark analysis, Genome Res., 10, 1333-1341.
14. Ji, J. and Loeb, L. A. 1992, Fidelity of HIV-1 reverse transcriptase copying RNA in vitro, Biochemistry, 31, 954-958.
15. Kikuno, R., Nagase, T., Suyama, M., Waki, M., Hirosawa, M., and Ohara, O. 2000, HUGE: a database for human large proteins identified in Kazusa cDNA sequencing project, Nucleic Acids Res., 28, 331-332.
16. Beaudoing, E., Freier, S., Wyatt, J. R., Claverie, J.-M., and Gautheret, D. 2000, Patterns of variant polyadenylation signal usage in human genes, Genome Res., 10, 1001-1010.
17. Gyapay, G., Schmitt, K., Fizames, C. et al. 1996, A radiation hybrid map of the human genome, Hum. Mol. Genet., 5, 339-346.
18. Altschul, S. F., Madden, T. L., Schaffer, A. A. et al. 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389-3402.
19. Florea, L., Hartzell, G., Zhang, Z., Rubin, G. M., and Miller, W. 1998, A computer program for aligning a cDNA sequence with a genomic DNA sequence, Genome Res., 8, 967-974.
20. Goffeau, A., Barrell, B. G., Bussey, H. et al. 1996, Life with 6000 genes, Science, 274, 546-567.
21. The C. elegans Sequencing Consortium. 1998, Genome sequence of the nematode, C. elegans: A platform for investing biology, Science, 282, 2012-2018.
22. Adams, M. D. Celniker, S. E., Holt, R. A. et al. 2000, The genome sequence of Drosophila melanogaster, Science, 287, 2185-2195.
23. Bateman, A., Birney, E., Durbin, R. et al. 2000, The Pfam families database, Nucleic Acids Res., 28, 263-266.
24. Nagase, T., Ishikawa, K.-I., Suyama, M. et al. 1998, Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro, DNA Res., 5, 277-276.
25. Kozak, M. 1996, Interpreting cDNA sequences: some insights from studies on translation, Mammalian Genome, 7, 563-574.