메뉴 건너뛰기




Volumn 43, Issue 12, 2009, Pages 2999-3008

A new fluorescent oligonucleotide probe for in situ detection of s-triazine-degrading Rhodococcus wratislaviensis in contaminated groundwater and soil samples

Author keywords

Biodegradation; FISH; Groundwater; Probe; Terbuthylazine

Indexed keywords

AQUIFERS; BINARY ALLOYS; BIODEGRADATION; CONTAMINATION; FISH; GROUNDWATER; GROUNDWATER RESOURCES; HERBICIDES; HYDROGEOLOGY; OLIGONUCLEOTIDES; POLYOLS; PROBES; RNA; SOILS;

EID: 70249089407     PISSN: 00431354     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.watres.2009.04.022     Document Type: Article
Times cited : (34)

References (44)
  • 1
    • 0036795788 scopus 로고    scopus 로고
    • Double-staining method for differentiation of morphological changes and membrane integrity of Campylobacter coli cells
    • Alonso J.L., Mascellaro S., Moreno Y., Ferrus M.A., and Hernandez J. Double-staining method for differentiation of morphological changes and membrane integrity of Campylobacter coli cells. Applied and Environmental Microbiology 68 10 (2002) 5151-5154
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.10 , pp. 5151-5154
    • Alonso, J.L.1    Mascellaro, S.2    Moreno, Y.3    Ferrus, M.A.4    Hernandez, J.5
  • 2
    • 38649096239 scopus 로고    scopus 로고
    • Responses of benthic bacteria to experimental drying in sediments from Mediterranean temporary rivers
    • Amalfitano S., Fazi S., Zoppini A., Barra Caracciolo A., and Grenni P. Responses of benthic bacteria to experimental drying in sediments from Mediterranean temporary rivers. Microbial Ecology 55 2 (2008) 270-279
    • (2008) Microbial Ecology , vol.55 , Issue.2 , pp. 270-279
    • Amalfitano, S.1    Fazi, S.2    Zoppini, A.3    Barra Caracciolo, A.4    Grenni, P.5
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann R., Ludwig W., and Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews 59 1 (1995) 143-169
    • (1995) Microbiological Reviews , vol.59 , Issue.1 , pp. 143-169
    • Amann, R.1    Ludwig, W.2    Schleifer, K.H.3
  • 7
    • 27744539469 scopus 로고    scopus 로고
    • In situ analysis of native microbial communities in complex samples with high particulate loads
    • Barra Caracciolo A., Grenni P., Cupo C., and Rossetti S. In situ analysis of native microbial communities in complex samples with high particulate loads. FEMS Microbiology Letters 253 1 (2005) 55-58
    • (2005) FEMS Microbiology Letters , vol.253 , Issue.1 , pp. 55-58
    • Barra Caracciolo, A.1    Grenni, P.2    Cupo, C.3    Rossetti, S.4
  • 8
    • 0027241811 scopus 로고
    • Metabolism of the herbicide atrazine by Rhodococcus strains
    • Behki R., Topp E., and Germon P. Metabolism of the herbicide atrazine by Rhodococcus strains. Applied and Environmental Microbiology 59 6 (1993) 1955-1959
    • (1993) Applied and Environmental Microbiology , vol.59 , Issue.6 , pp. 1955-1959
    • Behki, R.1    Topp, E.2    Germon, P.3
  • 10
    • 35348853727 scopus 로고    scopus 로고
    • Seasonal variations of selected herbicides and related metabolites in water, sediment, seaweed and clams in the Sacca di Goro coastal lagoon (Northern Adriatic)
    • Carafa R., Wollgast J., Canuti E., Ligthart J., Dueri S., Hanke G., Eisenreich S.J., Viaroli P., and Zaldívar J.M. Seasonal variations of selected herbicides and related metabolites in water, sediment, seaweed and clams in the Sacca di Goro coastal lagoon (Northern Adriatic). Chemosphere 69 10 (2007) 1625-1637
    • (2007) Chemosphere , vol.69 , Issue.10 , pp. 1625-1637
    • Carafa, R.1    Wollgast, J.2    Canuti, E.3    Ligthart, J.4    Dueri, S.5    Hanke, G.6    Eisenreich, S.J.7    Viaroli, P.8    Zaldívar, J.M.9
  • 11
    • 0032941406 scopus 로고    scopus 로고
    • Counting and size classification of active soil bacteria by fluorescence in situ hybridization with an rRNA oligonucleotide probe
    • Christensen H., Hansen M., and Sørensen J. Counting and size classification of active soil bacteria by fluorescence in situ hybridization with an rRNA oligonucleotide probe. Applied and Environmental Microbiology 65 4 (1999) 1753-1761
    • (1999) Applied and Environmental Microbiology , vol.65 , Issue.4 , pp. 1753-1761
    • Christensen, H.1    Hansen, M.2    Sørensen, J.3
  • 12
    • 34249870592 scopus 로고    scopus 로고
    • Quantification of uncultured microorganisms by fluorescence microscopy and digital image analysis
    • Daims H., and Wagner M. Quantification of uncultured microorganisms by fluorescence microscopy and digital image analysis. Applied Microbiology and Biotechnology 75 2 (2007) 237-248
    • (2007) Applied Microbiology and Biotechnology , vol.75 , Issue.2 , pp. 237-248
    • Daims, H.1    Wagner, M.2
  • 14
    • 0347927257 scopus 로고    scopus 로고
    • In situ exposure to low herbicide concentrations affects microbial population composition and catabolic gene frequency in an aerobic shallow aquifer
    • de Lipthay J.R., Tuxen N., Johnsen K., Hansen L.H., Albrechtsen H.J., Bjerg P.L., and Aamand J. In situ exposure to low herbicide concentrations affects microbial population composition and catabolic gene frequency in an aerobic shallow aquifer. Applied and Environmental Microbiology 69 1 (2003) 461-467
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.1 , pp. 461-467
    • de Lipthay, J.R.1    Tuxen, N.2    Johnsen, K.3    Hansen, L.H.4    Albrechtsen, H.J.5    Bjerg, P.L.6    Aamand, J.7
  • 15
    • 3042745497 scopus 로고    scopus 로고
    • FISH shows that Desulfotomaculum spp. are the dominating sulphate-reducing bacteria in a pristine aquifer
    • Detmers J., Strass H., Schulte U., Bergmann A., Knittel K., and Kuever J. FISH shows that Desulfotomaculum spp. are the dominating sulphate-reducing bacteria in a pristine aquifer. Microbial Ecology 47 3 (2004) 236-242
    • (2004) Microbial Ecology , vol.47 , Issue.3 , pp. 236-242
    • Detmers, J.1    Strass, H.2    Schulte, U.3    Bergmann, A.4    Knittel, K.5    Kuever, J.6
  • 16
    • 0033567931 scopus 로고    scopus 로고
    • Subcritical water extraction followed by liquid cromatography mass spectrometry for determining terbuthylazine and its metabolites in aged and incubated soils
    • Di Corcia A., Barra Caracciolo A., Crescenzi C., Giuliano G., Murtas S., and Samperi R. Subcritical water extraction followed by liquid cromatography mass spectrometry for determining terbuthylazine and its metabolites in aged and incubated soils. Environmental Science and Technology 33 18 (1999) 3271-3277
    • (1999) Environmental Science and Technology , vol.33 , Issue.18 , pp. 3271-3277
    • Di Corcia, A.1    Barra Caracciolo, A.2    Crescenzi, C.3    Giuliano, G.4    Murtas, S.5    Samperi, R.6
  • 17
    • 33847372016 scopus 로고    scopus 로고
    • Biodegradation of methylthio- s-triazines by Rhodococcus sp. strain FJ1117YT, and production of the corresponding methylsulfinil, methylsulfonyl and hydroxyl analogues
    • Fujii K., Takagi K., Hiradate S., Iwasaki A., and Harada N. Biodegradation of methylthio- s-triazines by Rhodococcus sp. strain FJ1117YT, and production of the corresponding methylsulfinil, methylsulfonyl and hydroxyl analogues. Pest Management Science 63 3 (2007) 254-260
    • (2007) Pest Management Science , vol.63 , Issue.3 , pp. 254-260
    • Fujii, K.1    Takagi, K.2    Hiradate, S.3    Iwasaki, A.4    Harada, N.5
  • 18
    • 33644863886 scopus 로고    scopus 로고
    • Biodegradation of oxadiazon by a soil isolated Pseudomonas fluorescens strain CG5: implementation in an herbicide removal reactor and modelling
    • Garbi C., Casasús L., Martinez-Álvarez R., Robla J.I., and Martín M. Biodegradation of oxadiazon by a soil isolated Pseudomonas fluorescens strain CG5: implementation in an herbicide removal reactor and modelling. Water Research 40 6 (2006) 1217-1223
    • (2006) Water Research , vol.40 , Issue.6 , pp. 1217-1223
    • Garbi, C.1    Casasús, L.2    Martinez-Álvarez, R.3    Robla, J.I.4    Martín, M.5
  • 20
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52 (2003) 696-704
    • (2003) Systematic Biology , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 21
    • 33646386143 scopus 로고    scopus 로고
    • Herbicide contamination of surficial groundwater in Northern Italy
    • Guzzella L., Pozzoni F., and Giuliano G. Herbicide contamination of surficial groundwater in Northern Italy. Environmental Pollution 142 2 (2006) 344-353
    • (2006) Environmental Pollution , vol.142 , Issue.2 , pp. 344-353
    • Guzzella, L.1    Pozzoni, F.2    Giuliano, G.3
  • 22
    • 0347622876 scopus 로고    scopus 로고
    • Enantioselective biodegradation of mecoprop in aerobic and anaerobic microcosms
    • Harrison I., Williams G.M., and Carlick C.A. Enantioselective biodegradation of mecoprop in aerobic and anaerobic microcosms. Chemosphere 53 5 (2003) 539-549
    • (2003) Chemosphere , vol.53 , Issue.5 , pp. 539-549
    • Harrison, I.1    Williams, G.M.2    Carlick, C.A.3
  • 23
    • 0034048511 scopus 로고    scopus 로고
    • Potential for isoproturon, atrazine and mecoprop to be degraded within a chalk aquifer system
    • Johnson A.C., White C., and Bhardwaj C.L. Potential for isoproturon, atrazine and mecoprop to be degraded within a chalk aquifer system. Journal of Contaminant Hydrology 44 1 (2000) 1-18
    • (2000) Journal of Contaminant Hydrology , vol.44 , Issue.1 , pp. 1-18
    • Johnson, A.C.1    White, C.2    Bhardwaj, C.L.3
  • 24
    • 0345020475 scopus 로고    scopus 로고
    • Bacterial inoculation of granular activated carbon filters for the removal of atrazine from surface water
    • Jones R.L., Owen S.A., Horrell P., and Burns R.G. Bacterial inoculation of granular activated carbon filters for the removal of atrazine from surface water. Water Research 32 8 (1998) 2542-2549
    • (1998) Water Research , vol.32 , Issue.8 , pp. 2542-2549
    • Jones, R.L.1    Owen, S.A.2    Horrell, P.3    Burns, R.G.4
  • 27
    • 20444371027 scopus 로고    scopus 로고
    • Biodegradation and Rhodococcus-masters of catabolic versatility
    • Larkin M.J., Kulakov L.A., and Allen C.C. Biodegradation and Rhodococcus-masters of catabolic versatility. Current Opinion in Biotechnology 16 3 (2005) 282-290
    • (2005) Current Opinion in Biotechnology , vol.16 , Issue.3 , pp. 282-290
    • Larkin, M.J.1    Kulakov, L.A.2    Allen, C.C.3
  • 28
    • 0037258055 scopus 로고    scopus 로고
    • probeBase - an online resource for rRNA-targeted oligonucleotide probes
    • Loy A., Horn M., and Wagner M. probeBase - an online resource for rRNA-targeted oligonucleotide probes. Nucleic Acids Research 31 1 (2003) 514-516
    • (2003) Nucleic Acids Research , vol.31 , Issue.1 , pp. 514-516
    • Loy, A.1    Horn, M.2    Wagner, M.3
  • 29
    • 38949127236 scopus 로고    scopus 로고
    • A new mathematical model to evaluate simazine removal in three different immobilized-biomass reactors
    • Martín M., Casasús L., Garbi C., Nande M., Vargas R., Robla J.I., Sanchez M., and Allende J.L. A new mathematical model to evaluate simazine removal in three different immobilized-biomass reactors. Water Research 42 4-5 (2008) 1035-1042
    • (2008) Water Research , vol.42 , Issue.4-5 , pp. 1035-1042
    • Martín, M.1    Casasús, L.2    Garbi, C.3    Nande, M.4    Vargas, R.5    Robla, J.I.6    Sanchez, M.7    Allende, J.L.8
  • 32
    • 0029416923 scopus 로고
    • Biodegradation of the herbicide atrazine in groundwater under laboratory conditions
    • Mirigain I., Green G., and Monteil H. Biodegradation of the herbicide atrazine in groundwater under laboratory conditions. Environmental Technology 16 10 (1995) 967-976
    • (1995) Environmental Technology , vol.16 , Issue.10 , pp. 967-976
    • Mirigain, I.1    Green, G.2    Monteil, H.3
  • 33
    • 0034279972 scopus 로고    scopus 로고
    • Determination of simazine, terbuthylazine, and their dealkylated chlorotriazine metabolites in soil using sonication microextraction and gas chromatography
    • Navarro S., Oliva J., Barba A., and García C. Determination of simazine, terbuthylazine, and their dealkylated chlorotriazine metabolites in soil using sonication microextraction and gas chromatography. Journal of AOAC International 83 5 (2000) 1239-1243
    • (2000) Journal of AOAC International , vol.83 , Issue.5 , pp. 1239-1243
    • Navarro, S.1    Oliva, J.2    Barba, A.3    García, C.4
  • 34
    • 3242688121 scopus 로고    scopus 로고
    • Persistence of four s-triazine herbicides in river, sea and groundwater samples exposed to sunlight and darkness under laboratory conditions
    • Navarro S., Vela N., Giménez M.J., and Navarro G. Persistence of four s-triazine herbicides in river, sea and groundwater samples exposed to sunlight and darkness under laboratory conditions. Science of Total Environment 329 1-3 (2004) 87-97
    • (2004) Science of Total Environment , vol.329 , Issue.1-3 , pp. 87-97
    • Navarro, S.1    Vela, N.2    Giménez, M.J.3    Navarro, G.4
  • 35
    • 3442897665 scopus 로고    scopus 로고
    • Effect of temperature on the disappearance of four triazine herbicides in environmental waters
    • Navarro S., Vela N., Giménez M.J., and Navarro G. Effect of temperature on the disappearance of four triazine herbicides in environmental waters. Chemosphere 57 1 (2004) 51-59
    • (2004) Chemosphere , vol.57 , Issue.1 , pp. 51-59
    • Navarro, S.1    Vela, N.2    Giménez, M.J.3    Navarro, G.4
  • 36
    • 33751536386 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
    • Paul J. (Ed), Academic Press, London
    • Pernthaler J., Glöckner F.O., Schönhuber W., and Amann R. Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. In: Paul J. (Ed). Methods in Microbiology: Marine Microbiology vol. 30 (2001), Academic Press, London 207-210
    • (2001) Methods in Microbiology: Marine Microbiology , vol.30 , pp. 207-210
    • Pernthaler, J.1    Glöckner, F.O.2    Schönhuber, W.3    Amann, R.4
  • 38
    • 0344838589 scopus 로고    scopus 로고
    • Kinetic and phylogenetic characterization of an anaerobic dechlorinating microbial community
    • Rossetti S., Blackall L., Magone M., Hugenholtz P., Plumb J.J., and Tandoi W. Kinetic and phylogenetic characterization of an anaerobic dechlorinating microbial community. Microbiology 149 (2003) 459-469
    • (2003) Microbiology , vol.149 , pp. 459-469
    • Rossetti, S.1    Blackall, L.2    Magone, M.3    Hugenholtz, P.4    Plumb, J.J.5    Tandoi, W.6
  • 39
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22 22 (1994) 4673-4680
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 40
  • 42
    • 0029824352 scopus 로고    scopus 로고
    • Phylogenetic relationships of the genera Acetobacterium and Eubacterium sensu stricto and reclassification of Eubacterium alactolyticum as Pseudoramibacter alactolyticus gen. nov., comb. nov
    • Willems A., and Collins M.D. Phylogenetic relationships of the genera Acetobacterium and Eubacterium sensu stricto and reclassification of Eubacterium alactolyticum as Pseudoramibacter alactolyticus gen. nov., comb. nov. International Journal of Systematic Bacteriology 46 4 (1996) 1083-1087
    • (1996) International Journal of Systematic Bacteriology , vol.46 , Issue.4 , pp. 1083-1087
    • Willems, A.1    Collins, M.D.2
  • 43
    • 0037904428 scopus 로고    scopus 로고
    • Changes in enantiomeric fraction as evidence of natural attenuation of mecoprop in a limestone aquifer
    • Williams G.M., Harrison I., Carlick C.A., and Crowley O. Changes in enantiomeric fraction as evidence of natural attenuation of mecoprop in a limestone aquifer. Journal of Contaminant Hydrology 64 3 (2003) 1-15
    • (2003) Journal of Contaminant Hydrology , vol.64 , Issue.3 , pp. 1-15
    • Williams, G.M.1    Harrison, I.2    Carlick, C.A.3    Crowley, O.4
  • 44
    • 33644856670 scopus 로고    scopus 로고
    • Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides
    • Yilmaz L.S., Ökten H.E., and Noguera D.R. Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides. Applied Environmental Microbiology 72 1 (2006) 733-744
    • (2006) Applied Environmental Microbiology , vol.72 , Issue.1 , pp. 733-744
    • Yilmaz, L.S.1    Ökten, H.E.2    Noguera, D.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.