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Volumn 149, Issue 2, 2003, Pages 459-469

Kinetic and phylogenetic characterization of an anaerobic dechlorinating microbial community

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL DNA; BACTERIAL DNA; DNA 16S; ETHYLENE; HYDROGEN; METHANOL; PRIMER DNA; TETRACHLOROETHYLENE; VINYL CHLORIDE;

EID: 0344838589     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.26018-0     Document Type: Review
Times cited : (40)

References (44)
  • 2
    • 0000622269 scopus 로고
    • In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes
    • Edited by A. D. L. Akkermans, J. D. van Elsas & F. J. de Bruijn. London: Kluwer
    • Amann, R. I. (1995). In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes. In Molecular Microbial Ecology Manual, pp. MMEM-3.3.6/1-MMEM-3.3.6/15. Edited by A. D. L. Akkermans, J. D. van Elsas & F. J. de Bruijn. London: Kluwer.
    • (1995) Molecular Microbial. Ecology Manual
    • Amann, R.I.1
  • 3
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., Binder, B. J., Olson, R. J., Chisholm, S. W., Devereux, R. & Stahl, D. A. (1990). Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56, 1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 4
    • 0026532736 scopus 로고
    • Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms
    • Amann, R. I., Stromley, J., Devereux, R., Key, R. & Stahl, D. A. (1992). Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms. Appl Environ Microbiol 58, 614-623.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 614-623
    • Amann, R.I.1    Stromley, J.2    Devereux, R.3    Key, R.4    Stahl, D.A.5
  • 6
    • 0002160408 scopus 로고    scopus 로고
    • Reductive dechlorination of tetrachloroethene by an anaerobic microbial consortium
    • Beccari, M., Majone, M., Piemontese, G., Tandoi, V. & Tomei, M. C. (1998). Reductive dechlorination of tetrachloroethene by an anaerobic microbial consortium. Chim Ind 80, 63-72.
    • (1998) Chim. Ind. , vol.80 , pp. 63-72
    • Beccari, M.1    Majone, M.2    Piemontese, G.3    Tandoi, V.4    Tomei, M.C.5
  • 7
    • 0002794761 scopus 로고
    • La contaminazione delle acque sotterranee da parte di composti organici ed inorganici
    • Berbenni, P. (1994). La contaminazione delle acque sotterranee da parte di composti organici ed inorganici. Inquinamento 5, 50-59.
    • (1994) Inquinamento , vol.5 , pp. 50-59
    • Berbenni, P.1
  • 9
    • 0022572971 scopus 로고
    • Interspecies hydrogen transfer during methanol degradation by Sporomusa acidovorans and hydrogenophilic anaerobes
    • Cord-Ruwisch, R. & Olivier, B. (1986). Interspecies hydrogen transfer during methanol degradation by Sporomusa acidovorans and hydrogenophilic anaerobes. Arch Microbiol 144, 163-165.
    • (1986) Arch. Microbiol. , vol.144 , pp. 163-165
    • Cord-Ruwisch, R.1    Olivier, B.2
  • 10
    • 0001422189 scopus 로고
    • The capacity of hydrogenotrophic anaerobic bacteria to compete for traces of hydrogen depends on the redox potential of the terminal electron acceptor
    • Cord-Ruwisch, R., Seitz, H.-J. & Conrad, R. (1988). The capacity of hydrogenotrophic anaerobic bacteria to compete for traces of hydrogen depends on the redox potential of the terminal electron acceptor. Arch Microbiol 149, 350-357.
    • (1988) Arch. Microbiol. , vol.149 , pp. 350-357
    • Cord-Ruwisch, R.1    Seitz, H.-J.2    Conrad, R.3
  • 11
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all bacteria: Development and evaluation of a more comprehensive probe set
    • Daims, H., Bruhl, A., Amann, R., Schleifer, K. H. & Wagner, M. (1999). The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22, 434-444.
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 434-444
    • Daims, H.1    Bruhl, A.2    Amann, R.3    Schleifer, K.H.4    Wagner, M.5
  • 12
    • 0035068917 scopus 로고    scopus 로고
    • A systematic approach to resolving division-level phylogenetic relationships using 16S rDNA data
    • Dalevi, D., Hugenholtz, P. & Blackall, L. L. (2001). A systematic approach to resolving division-level phylogenetic relationships using 16S rDNA data. Int J Syst Evol Microbiol 51, 385-391.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 385-391
    • Dalevi, D.1    Hugenholtz, P.2    Blackall, L.L.3
  • 14
    • 0025296244 scopus 로고
    • Desulfomonile tiedjei gen. nov. and sp. nov., a novel anaerobic, dehalogenating, sulfate-reducing bacterium
    • DeWeerd, K. A., Mandelco, L., Tanner, R. S., Woese, C. R. & Suflita, J. M. (1990). Desulfomonile tiedjei gen. nov. and sp. nov., a novel anaerobic, dehalogenating, sulfate-reducing bacterium. Arch Microbiol 154, 23-30.
    • (1990) Arch. Microbiol. , vol.154 , pp. 23-30
    • DeWeerd, K.A.1    Mandelco, L.2    Tanner, R.S.3    Woese, C.R.4    Suflita, J.M.5
  • 15
    • 0026473124 scopus 로고
    • Hydrogen as an electron donor for dechlorination of tetrachloroethene by an anaerobic mixed culture
    • DiStefano, T. D., Gossett, J. M. & Zinder, S. H. (1992). Hydrogen as an electron donor for dechlorination of tetrachloroethene by an anaerobic mixed culture. Appl Environ Microbiol 58, 3622-3629.
    • (1992) Appl. Environ. Microbiol. , vol.58 , pp. 3622-3629
    • DiStefano, T.D.1    Gossett, J.M.2    Zinder, S.H.3
  • 16
    • 0024248832 scopus 로고
    • Dependence of tetrachloroethylene dechlorination on methanogenic substrate consumption by Methanosarcina sp. strain DCM
    • Fathepure, B. Z. & Boyd, S. A. (1988). Dependence of tetrachloroethylene dechlorination on methanogenic substrate consumption by Methanosarcina sp. strain DCM. Appl Environ Microbiol 54, 2976-2980.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 2976-2980
    • Fathepure, B.Z.1    Boyd, S.A.2
  • 18
    • 0012138211 scopus 로고
    • La contaminazione da organoclorurati alifatici dalle acque in Italia
    • 7 other authors
    • Funari, E., Bastone, A., Bottoni, P. & 7 other authors (1992). La contaminazione da organoclorurati alifatici dalle acque in Italia. Acqua Aria 6, 529-540.
    • (1992) Acqua Aria , vol.6 , pp. 529-540
    • Funari, E.1    Bastone, A.2    Bottoni, P.3
  • 19
    • 0029670464 scopus 로고    scopus 로고
    • Desulfitobacterium sp. strain PCE1, an anaerobic bacterium that can grow by reductive dechlorination of tetrachloroethene or ortho-chlorinated phenols
    • Gerritse, J., Renard, V., Pedro Gomes, T. M., Lawson, P. A., Collins, M. D. & Gottschal, J. C. (1996). Desulfitobacterium sp. strain PCE1, an anaerobic bacterium that can grow by reductive dechlorination of tetrachloroethene or ortho-chlorinated phenols. Arch Microbiol 165, 132-140.
    • (1996) Arch. Microbiol. , vol.165 , pp. 132-140
    • Gerritse, J.1    Renard, V.2    Pedro Gomes, T.M.3    Lawson, P.A.4    Collins, M.D.5    Gottschal, J.C.6
  • 20
    • 0002594949 scopus 로고
    • Interspecies hydrogen transfer in co-cultures of methanol utilizing acidogens and sulfate reducing or methanogenic bacteria
    • Heijthuijsen, J. H. F. G. & Hanson, T. A. (1986). Interspecies hydrogen transfer in co-cultures of methanol utilizing acidogens and sulfate reducing or methanogenic bacteria. FEMS Microbiol Ecol 38, 57-64.
    • (1986) FEMS Microbiol. Ecol. , vol.38 , pp. 57-64
    • Heijthuijsen, J.H.F.G.1    Hanson, T.A.2
  • 21
    • 0027199784 scopus 로고
    • A highly purified enrichment culture couples the reductive dechlorination of tetrachloroethene to growth
    • Holliger, C., Schraa, G., Stams, A. J. M. & Zehnder, A. J. B. (1993). A highly purified enrichment culture couples the reductive dechlorination of tetrachloroethene to growth. Appl Environ Microbiol 59, 2991-2997.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 2991-2997
    • Holliger, C.1    Schraa, G.2    Stams, A.J.M.3    Zehnder, A.J.B.4
  • 22
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P., Goebel, B. M. & Pace, N. R. (1998a). Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180, 4765-4774.
    • (1998) J. Bacteriol. , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 23
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellowstone hot spring
    • Hugenholtz, P., Pitulle, C., Hershberger, K. L. & Pace, N. R. (1998b). Novel division level bacterial diversity in a Yellowstone hot spring. J Bacteriol 180, 366-376.
    • (1998) J. Bacteriol. , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 24
    • 0003067734 scopus 로고    scopus 로고
    • Design and evaluation of 16S rRNA-targeted oligonucleotide probes for fluorescence in situ hybridisation
    • Edited by M. Aquino de Muro & R. Rapley. London: Humana
    • Hugenholtz, P., Tyson, G. W. & Blackall, L. L. (2001a). Design and evaluation of 16S rRNA-targeted oligonucleotide probes for fluorescence in situ hybridisation. In Gene Probes: Principles and Protocols, pp. 29-42. Edited by M. Aquino de Muro & R. Rapley. London: Humana.
    • (2001) Gene Probes: Principles and Protocols , pp. 29-42
    • Hugenholtz, P.1    Tyson, G.W.2    Blackall, L.L.3
  • 25
    • 0035163571 scopus 로고    scopus 로고
    • Investigation of candidate division TM7, a recently recognized major lineage of the domain bacteria with no known pure-culture representatives
    • Hugenholtz, P., Tyson, G. W., Webb, R. I., Wagner, A. M. & Blackall, L. L. (2001b). Investigation of candidate division TM7, a recently recognized major lineage of the domain bacteria with no known pure-culture representatives. Appl Environ Microbiol 67, 411-419.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 411-419
    • Hugenholtz, P.1    Tyson, G.W.2    Webb, R.I.3    Wagner, A.M.4    Blackall, L.L.5
  • 26
    • 0030783150 scopus 로고    scopus 로고
    • Desulfuromonas chloroethenica sp. nov. uses tetrachloroethene and trichloroethene as electron acceptors
    • Krumholz, L. R. (1997). Desulfuromonas chloroethenica sp. nov. uses tetrachloroethene and trichloroethene as electron acceptors. Int J Syst Bacteriol 47, 1262-1263.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 1262-1263
    • Krumholz, L.R.1
  • 27
    • 0029851254 scopus 로고    scopus 로고
    • A freshwater anaerobe coupling acetate oxidation to tetrachloroethene dehalogenation
    • Krumholz, L. R., Sharp, R. & Fishbain, S. (1996). A freshwater anaerobe coupling acetate oxidation to tetrachloroethene dehalogenation. Appl Environ Microbiol 62, 4108-4113.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 4108-4113
    • Krumholz, L.R.1    Sharp, R.2    Fishbain, S.3
  • 28
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Edited by E. Stackebrandt & M. Goodfellow. Chichester: Academic Press
    • Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Academic Press.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 29
    • 0141919038 scopus 로고    scopus 로고
    • 16S rRNA gene-based detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species
    • Löffler, F E., Sun, Q., Li, J. & Tiedje, J. M. (2000). 16S rRNA gene-based detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species. Appl Environ Microbiol 66, 1369-1374.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1369-1374
    • Löffler, F.E.1    Sun, Q.2    Li, J.3    Tiedje, J.M.4
  • 30
    • 0027068041 scopus 로고
    • Phylogenetic oligonucleotide probes for the major subclasses of Proteobacteria: Problems and solutions
    • Manz, W., Amann, R., Ludwig, W., Wagner, M. & Schleifer, K.-H. (1992). Phylogenetic oligonucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst Appl Microbiol 15, 593-600.
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.-H.5
  • 31
    • 0344622120 scopus 로고    scopus 로고
    • Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene
    • Maymó-Gatell, X., Chien, Y., Gossett, J. M. & Zinder, S. H. (1997). Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene. Science 276, 1568-1571.
    • (1997) Science , vol.276 , pp. 1568-1571
    • Maymó-Gatell, X.1    Chien, Y.2    Gossett, J.M.3    Zinder, S.H.4
  • 32
    • 0028971099 scopus 로고
    • 2-utilizing enrichment culture that reductively dechlorinates tetrachloroethene to vinyl chloride and ethene in the absence of methanogenesis and acetogenesis
    • 2-utilizing enrichment culture that reductively dechlorinates tetrachloroethene to vinyl chloride and ethene in the absence of methanogenesis and acetogenesis. Appl Environ Microbiol 61, 3928-3933.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 3928-3933
    • Maymó-Gatell, X.1    Tandoi, V.2    Gossett, J.M.3    Zinder, S.H.4
  • 33
    • 0033066743 scopus 로고    scopus 로고
    • Specific oligonucleotide probes for in situ detection of a major group of Gram-positive bacteria with low DNA G+C content
    • Meier, H., Amann, R., Ludwig, W. & Schleifer, K.-H. (1999). Specific oligonucleotide probes for in situ detection of a major group of Gram-positive bacteria with low DNA G+C content. Syst Appl Microbiol 22, 186-196.
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 186-196
    • Meier, H.1    Amann, R.2    Ludwig, W.3    Schleifer, K.-H.4
  • 34
    • 0030732002 scopus 로고    scopus 로고
    • Comparative studies on tetrachloroethene reductive dechlorination mediated by Desulfitobacterium sp. strain PCE-S
    • Miller, E., Wohlfarth, G. & Diekert, G. (1997). Comparative studies on tetrachloroethene reductive dechlorination mediated by Desulfitobacterium sp. strain PCE-S. Arch Microbiol 168, 513-519.
    • (1997) Arch. Microbiol. , vol.168 , pp. 513-519
    • Miller, E.1    Wohlfarth, G.2    Diekert, G.3
  • 35
    • 0026799502 scopus 로고
    • Microbial reductive dehalogenation
    • Mohn, W. W. & Tiedje, J. M. (1992). Microbial reductive dehalogenation. Microbiol Rev 56, 482-507.
    • (1992) Microbiol. Rev. , vol.56 , pp. 482-507
    • Mohn, W.W.1    Tiedje, J.M.2
  • 37
    • 0028172253 scopus 로고
    • In situ probing of Gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides
    • Roller, C., Wagner, M., Amann, R., Ludwig, W. & Schleifer, K.-H. (1994). In situ probing of Gram-positive bacteria with high DNA G+C content using 23S rRNA-targeted oligonucleotides. Microbiology 140, 2849-2858.
    • (1994) Microbiology , vol.140 , pp. 2849-2858
    • Roller, C.1    Wagner, M.2    Amann, R.3    Ludwig, W.4    Schleifer, K.-H.5
  • 38
    • 0028831324 scopus 로고
    • Isolation and characterization of Dehalospirillum multivorans gen. nov., sp. nov., a tetrachloroethene-utilizing, strictly anaerobic bacterium
    • Scholz-Muramatsu, H., Neumann, A., Meßmer, M., Moore, E. & Diekert, G. (1995). Isolation and characterization of Dehalospirillum multivorans gen. nov., sp. nov., a tetrachloroethene- utilizing, strictly anaerobic bacterium. Arch Microbiol 163, 48-56.
    • (1995) Arch. Microbiol. , vol.163 , pp. 48-56
    • Scholz-Muramatsu, H.1    Neumann, A.2    Meßmer, M.3    Moore, E.4    Diekert, G.5
  • 39
    • 0030030536 scopus 로고    scopus 로고
    • Isolation and characterization of a facultatively aerobic bacterium that reductively dehalogenates tetrachloroethene to cis-1,2-dichloroethene
    • Sharma, P. K. & McCarty, P. L. (1996). Isolation and characterization of a facultatively aerobic bacterium that reductively dehalogenates tetrachloroethene to cis-1,2-dichloroethene. Appl Environ Microbiol 62, 761-765.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 761-765
    • Sharma, P.K.1    McCarty, P.L.2
  • 40
    • 0030245810 scopus 로고    scopus 로고
    • Comparative kinetics of hydrogen utilization for reductive dechlorination of tetrachloroethene and methanogenesis in an anaerobic enrichment culture
    • Smatlak, C. R., Gossett, J. M. & Zinder, S. H. (1996). Comparative kinetics of hydrogen utilization for reductive dechlorination of tetrachloroethene and methanogenesis in an anaerobic enrichment culture. Environ Sci Technol 30, 2850-2858.
    • (1996) Environ. Sci. Technol. , vol.30 , pp. 2850-2858
    • Smatlak, C.R.1    Gossett, J.M.2    Zinder, S.H.3
  • 41
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • Edited by E. Stackebrandt & M. Goodfellow. Chichester: Academic Press
    • Stahl, D. A. & Amann, R. (1991). Development and application of nucleic acid probes. In Nucleic Acid Techniques in Bacterial Systematics, pp. 205-248. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Academic Press.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 42
    • 0028278003 scopus 로고
    • Reductive dehalogenation of chlorinated ethenes and halogenated ethanes by a high rate anaerobic enrichment culture
    • Tandoi, V., DiStefano, T. D., Bowser, P. A., Gosset, J. M. & Zinder, S. H. (1994). Reductive dehalogenation of chlorinated ethenes and halogenated ethanes by a high rate anaerobic enrichment culture. Environ Sci Technol 28, 973-979.
    • (1994) Environ. Sci. Technol. , vol.28 , pp. 973-979
    • Tandoi, V.1    DiStefano, T.D.2    Bowser, P.A.3    Gosset, J.M.4    Zinder, S.H.5
  • 43
    • 0027939117 scopus 로고
    • Transformation of tetrachloroethylene to trichloroethylene by homoacetogenic bacteria
    • Terzenbach, D. P. & Blaut, M. (1994). Transformation of tetrachloroethylene to trichloroethylene by homoacetogenic bacteria. FEMS Microbiol Lett 123, 213-218.
    • (1994) FEMS Microbiol. Lett. , vol.123 , pp. 213-218
    • Terzenbach, D.P.1    Blaut, M.2
  • 44
    • 0030428346 scopus 로고    scopus 로고
    • Isolation of an anaerobic bacterium which reductively dechlorinates tetrachloroethene and trichloroethene
    • Wild, A., Hermann, R. & Leisinger, T. (1996). Isolation of an anaerobic bacterium which reductively dechlorinates tetrachloroethene and trichloroethene. Biodegradation 7, 507-511.
    • (1996) Biodegradation , vol.7 , pp. 507-511
    • Wild, A.1    Hermann, R.2    Leisinger, T.3


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