Quantification of Wautersia [Ralstonia] basilensis in the mycorrhizosphere of Pinus thunbergii Parl. and its effect on mycorrhizal formation

Soil Biology and Biochemistry

Volumn 41, Issue 10, 2009, Pages 2147-2152

  Kataoka, Ryota ^a   Siddiqui, Zaki A ^a,b   Taniguchi, Takeshi ^a   Futai, Kazuyoshi ^a  

^a KYOTO UNIVERSITY   (Japan)

^b ALIGARH MUSLIM UNIVERSITY   (India)

Author keywords

Mycorrhiza helper bacteria; Pinus thunbergii; Real time PCR; Wautersia basilensis

Indexed keywords

BACTERIA; GENE ENCODING; PLANTS (BOTANY); POLYMERASE CHAIN REACTION; RNA; SEED; SOILS;

DETECTION AND QUANTIFICATIONS; JAPANESE BLACK PINES; LINEAR RELATIONSHIPS; MYCORRHIZAL SYMBIOSIS; PINUS THUNBERGII; REAL-TIME PCR; REAL-TIME PCR ASSAY; WAUTERSIA BASILENSIS;

CYTOLOGY;

BACTERIUM; CONIFEROUS TREE; DNA; DUNE; MICROBIAL COMMUNITY; MICROCOSM; MYCORRHIZA; POLYMERASE CHAIN REACTION; POPULATION DENSITY; RHIZOSPHERE;

ASIA; CHUGOKU; EURASIA; FAR EAST; HONSHU; JAPAN; TOTTORI [CHUGOKU];

BACTERIA (MICROORGANISMS); CUPRIAVIDUS; CUPRIAVIDUS BASILENSIS; PINUS THUNBERGII; RALSTONIA; SUILLUS GRANULATUS;

EID: 70249088287     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2009.07.027     Document Type: Article

References (27)

1. Aspray T.A., Whipps E.E., and Bending G.D. Importance of mycorrhization helper bacteria cell density and metabolite localization on the Pinus sylvestris-Lactarius rufus symbiosis. FEMS Microbiology Ecology 56 (2006) 25-33
2. Bianciotto V., Minerdi D., Perotto S., and Bonfante P. Cellular interactions between arbuscular mycorrhizal fungi and rhizosphere bacteria. Protoplasma 193 (1996) 123-131
3. Frey-Klett P., Churin J., Pierrat J., and Garbaye J. Dose effect in the dual inoculation of an ectomycorrhizal fungus and a mycorrhiza helper bacterium in two forest nurseries. Soil Biology & Biochemistry 31 (1999) 1555-1562
4. Frey-Klett P., Garbaye J., and Tarkka M. Tansley review. The mycorrhiza helper bacteria revisited. New Phytologist 176 (2007) 22-36
5. Garbaye J. Biological interactions in the mycorrhizosphere. Experientia 47 (1991) 370-375
6. Garbaye J. Tansley Review No. 76 Helper bacteria: a new dimension to the mycorrhizal symbiosis. New Phytologist 128 (1994) 197-210
7. Gonzalez J.E., and Keshavan N.D. Messing with bacterial quorum sensing. Microbiology and Molecular Biology Reviews 70 (2006) 859-875
8. Kataoka R., and Futai K. A new mycorrhizal helper bacterium, Ralstonia species, in the ectomycorrhizal symbiosis between Pinus thunbergii and Suillus granulatus. Biology and Fertility of Soils (2008) 10.1007/s00374-008-0340-0
9. Kataoka R., Taniguchi T., Ooshima H., and Futai K. Comparison of the bacterial communities established on the mycorrhizae formed on Pinus thunbergii root tips by eight species of fungi. Plant and Soil 304 (2008) 267-275
10. Khmel I.A. Quorum-sensing regulation of gene expression: fundamental and applied aspects and the role in bacterial communication. Microbiology 75 (2006) 457-464
11. Kirk M.R., Randy P.R., and Wittwer C.T. Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Analytical Biochemistry 245 (1997) 154-160
12. Lloyd-Jones G., Laurie A.D., and Tizzard A.C. Quantification of the Pseudomonas population in New Zealand soils by fluorogenic PCR assay and culturing techniques. Journal of Microbiological Methods 60 (2005) 217-224
13. Maidak B.L., Cole J.R., Parker Jr. C.T., Garrity G.M., Larsen N., Li B., Lilburn T.G., McCaughey M.J., Olsen G.J., Overbeek R., Pramanik S., Schmidt T.M., Tiedje J.M., and Woese C.R. A new version of the RDP (Ribosomal Database Project). Nucleic Acids Research 27 (1999) 171-173
14. Marx D.H. The influence of ectotrophic mycorrhizal fungi on the resistance of pine roots to pathogenic infections. I. Antagonism of mycorrhizal fungi to root pathogenic fungi and soil bacteria. Phytopathology 59 (1969) 153-163
15. Mavrodi O.V., Mavrodi D.V., Thomashow L.S., and Weller D.M. Quantification of 2, 4-diacetylphloroglucinol-producing Pseudomonas fluorescens strains in the plant rhizosphere by real-time PCR. Applied and Environmental Microbiology 73 (2007) 5531-5538
16. Monnet C., Correia K., Sarthou A., and Irlinger F. Quantitative detection of Corynebacterium casei in cheese by real-time PCR. Applied and Environmental Microbiology 72 (2006) 6972-6979
17. Perotto S., and Bonfante P. Bacterial associations with mycorrhizal fungi: close and distant friends in the rhizosphere. Trends in Microbiology 5 (1997) 496-501
18. Pujol M., Badosa E., Manceau C., and Montesinos E. Assessment of the environmental fate of the biological control agent of fire blight, Pseudomonas fluorescens EPS62e, on apple by culture and real-time PCR methods. Applied and Environmental Microbiology 72 (2006) 2421-2427
19. Rincon A., Ruiz-Diez B., Garcia-Fraile S., Garcia J.A.L., Fernandez-Pascual M., Pueyo J.J., and De Felipe M.R. Colonization of Pinus halepensis roots by Pseudomonas fluorescens and interaction with the ectomycorrhizal fungus Suillus granulatus. FEMS Microbiology Ecology 51 (2005) 303-311
20. Smith S.E., and Read D.J. Mycorrhizal Symbiosis. third ed. (2008), Academic Press, New York, USA 878 pp.
21. Steinle P., Stuchi G., Stettler R., and Hanselmann K.W. Aerobic mineralization of 2, 6-dichlorophenol by Ralstonia sp. strain RK1. Applied and Environmental Microbiology 64 (1998) 2566-2571
22. Suzuki T., and Ishizawa S. Soil microorganisms; its activity and fertility. Bulletin of the National Institute of Agricultural Sciences 15 (1965) 100-104
23. Takeuchi Y., Kanzaki N., and Futai K. A nested PCR-based method for detecting the pine wood nematode, Bursaphelenchus xylophilus, from pine wood. Nematology 7 (2005) 775-782
24. Taniguchi T., Kanzaki N., Tamai S., Yamanaka N., and Futai K. Does ectomycorrhizal fungal community structure vary along a Japanese black pine (Pinus thunbergii) to black locust (Robinia pseudoacacia) gradient?. New Phytologist 173 (2007) 322-334
25. Vaneechoutte M., Kampfer P., Baere T.D., Falsen E., and Verschraegen G. Wautersia gen. nov., a novel genus accommodating the phylogenetic lineage including Ralstonia eutropha and related species, and proposal of Ralstonia [Pseudomonas] syzygii (Roberts et al. 1990) comb. nov. International Journal of Systematic and Evolutionary Microbiology 54 (2004) 317-327
26. Whitehead N.A., Barnard A.M.L., Slater H., and Simpson N.J.L. Quorum-sensing in Gram-negative bacteria. FEMS Microbiology Reviews 25 (2001) 365-404
27. Whipps J.M. Prospects and limitations for mycorrhizas in biocontrol of root pathogens. Canadian Journal of Botany 82 (2004) 1198-1227