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Volumn , Issue SUPPL. 27, 2009, Pages

Using orthoCluster for the detection of synteny blocks among multiple genomes

Author keywords

GBrowse; Genome painter; InParanoid; MultiParanoid; OrthoCluster; OrthoClusterDB; Segmental duplication

Indexed keywords

BASE MISPAIRING; BIOINFORMATICS; CAENORHABDITIS; COMPUTER ANALYSIS; COMPUTER PROGRAM; DATA ANALYSIS; GENE DUPLICATION; GENE LOCATION; GENE ORDER; GENETIC ANALYSIS; GENOME ANALYSIS; ONLINE SYSTEM; PRIORITY JOURNAL; REVIEW; SYNTENY;

EID: 70149123643     PISSN: 19343396     EISSN: 1934340X     Source Type: Journal    
DOI: 10.1002/0471250953.bi0610s27     Document Type: Review
Times cited : (12)

References (10)
  • 1
    • 33747892409 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and in paralogs shared by multiple proteomes
    • Alexeyenko, A., Tamas, I., Liu, G., and Sonnhammer, E.L. 2006. Automatic clustering of orthologs and in paralogs shared by multiple proteomes. Bioinformatics 22:e9-e15.
    • (2006) Bioinformatics , vol.22
    • Alexeyenko, A.1    Tamas, I.2    Liu, G.3    Sonnhammer, E.L.4
  • 3
    • 0036741566 scopus 로고    scopus 로고
    • Measures of synteny conservation between species pairs
    • Housworth, E.A. and Postlethwait, J. 2002. Measures of synteny conservation between species pairs. Genetics 162:441-448.
    • (2002) Genetics , vol.162 , pp. 441-448
    • Housworth, E.A.1    Postlethwait, J.2
  • 4
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • Li, L., Stoeckert, C.J. Jr., and Roos, D.S. 2003. OrthoMCL: Identification of ortholog groups for eukaryotic genomes. Genome Res. 13:2178-2189.
    • (2003) Genome Res. , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr., C.J.2    Roos, D.S.3
  • 6
    • 13444256478 scopus 로고    scopus 로고
    • Inparanoid: A comprehensive database of eukaryotic orthologs
    • O'Brien, K.P., Remm, M., and Sonnhammer, E.L. 2005. Inparanoid: A comprehensive database of eukaryotic orthologs. Nucleic Acids Res. 33:D476-D480.
    • (2005) Nucleic Acids Res. , vol.33
    • O'Brien, K.P.1    Remm, M.2    Sonnhammer, E.L.3
  • 7
    • 0035861990 scopus 로고    scopus 로고
    • Automatic clustering of orthologs and inparalogs from pairwise species comparisons
    • Remm, M., Storm, C.E., and Sonnhammer, E.L. 2001. Automatic clustering of orthologs and inparalogs from pairwise species comparisons. J. Mol. Biol. 314:1041-1052.
    • (2001) J. Mol. Biol. , vol.314 , pp. 1041-1052
    • Remm, M.1    Storm, C.E.2    Sonnhammer, E.L.3
  • 10
    • 43349085865 scopus 로고    scopus 로고
    • OrthoCluster: A new tool for mining synteny blocks and applications in comparative genomics
    • In March 25-30, 2008, Nantes, France. Association for Computer Machinery, New York
    • Zeng, X., Pei, J., Vergara, I.A., Nesbitt, M., Wang, K., and Chen, N. 2008. OrthoCluster: A new tool for mining synteny blocks and applications in comparative genomics. In 11th International Conference on Extending Database Technology (EDBT), March 25-30, 2008, Nantes, France. Association for Computer Machinery, New York.
    • (2008) 11th International Conference on Extending Database Technology (EDBT)
    • Zeng, X.1    Pei, J.2    Vergara, I.A.3    Nesbitt, M.4    Wang, K.5    Chen, N.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.