Comparative photochemistry of animal type 1 and type 4 cryptochromes

Biochemistry

Volumn 48, Issue 36, 2009, Pages 8585-8593

  Ozturk, Nuri ^a   Selby, Christopher P ^a   Song, Sang Hun ^a   Ye, Rui ^a   Tan, Chuang ^b   Kao, Ya Ting ^b   Zhong, Dongping ^b   Sancar, Aziz ^a  

^a UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^b OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL TYPES; ARABIDOPSIS; BLUE-LIGHT PHOTORECEPTORS; CELL LINES; COFACTORS; CRYPTOCHROMES; GENE REGULATIONS; HETEROLOGOUS SYSTEMS; IN-PLANTS; IN-VIVO; LIGHT FLASHES; PHOTO-INDUCED; PHOTOCHEMICAL BEHAVIORS; PROTEOLYTIC DEGRADATION; RECOMBINANT PROTEIN; SPECTROSCOPIC PROPERTY; ZEBRAFISH;

CELL CULTURE; CELL MEMBRANES; DEGRADATION; PROTEINS;

ANIMALS;

CRYPTOCHROME; CRYPTOCHROME 1; CRYPTOCHROME 4; QUERCETIN; UNCLASSIFIED DRUG; ZEBRAFISH PROTEIN;

ANIMAL CELL; ARABIDOPSIS; ARTICLE; CELL STRAIN HEK293; CHICKEN; COMPARATIVE STUDY; CONTROLLED STUDY; DNA DAMAGE; DROSOPHILA; EMBRYO; GENE EXPRESSION REGULATION; GENETIC TRANSFECTION; HUMAN; HUMAN CELL; ILLUMINATION; NONHUMAN; PHOTOCHEMISTRY; PHOTOLYSIS; PLASMID; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN PURIFICATION; STOICHIOMETRY; ZEBRA FISH;

ANIMALS; ANOPHELES GAMBIAE; AVIAN PROTEINS; CELL LINE; CHICKENS; DEOXYRIBODIPYRIMIDINE PHOTO-LYASE; DROSOPHILA PROTEINS; ESCHERICHIA COLI; FLAVIN-ADENINE DINUCLEOTIDE; FLAVINS; FLAVOPROTEINS; HUMANS; LIGHT; PHOTOCHEMISTRY; RATS; ZEBRAFISH PROTEINS;

ANIMALIA; ARABIDOPSIS; DANIO RERIO; HEXAPODA;

EID: 70149120740     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi901043s     Document Type: Article

References (42)

1. Cashmore, A. R. (2003) Cryptochromes: enabling plants and animals to determine circadian time. Cell 114, 537-543.
2. Lin, C., and Shalitin, D. (2003) Cryptochrome structure and signal transduction. Annu. Rev. Plant Biol. 54, 469-496.
3. Sancar, A. (2004) Regulation of the mammalian circadian clock by cryptochrome. J. Biol. Chem. 279, 34079-34082.
4. Stanewsky, R., Kaneko, M., Emery, P., Beretta, B., Wager-Smith, K., Kay, S. A., Rosbash, M., and Hall, J. C. (1998) The cryb mutation identifies cryptochrome as a circadian photoreceptor in Drosophila. Cell 95, 681-692. (Pubitemid 28544129)
5. Yuan, Q., Metterville, D., Briscoe, A. D., and Reppert, S. M. (2007) Insect cryptochromes: gene duplication and loss define diverse ways to construct insect circadian clocks. Mol. Biol. Evol. 24, 948-955.
6. Kobayashi, Y., Ishikawa, T., Hirayama, J., Daiyasu, H., Kanai, S., Toh, H., Fukuda, I., Tsujimura, T., Terada, N., Kamei, Y., Yuba, S., Iwai, S., and Todo, T. (2000) Molecular analysis of zebrafish photolyase/cryptochrome family: two types of cryptochromes present in zebrafish. Genes Cells 5, 725-738.
7. Kubo, Y., Akiyama, M., Fukada, Y., and Okano, T. (2006) Molecular cloning, mRNA expression, and immunocytochemical localization of a putative blue-light photoreceptor CRY4 in the chicken pineal gland. J. Neurochem. 97, 1155-1165.
8. Cermakian, N., Whitmore, D., Foulkes, N. S., and Sassone-Corsi, P. (2000) Asynchronous oscillations of two zebrafish CLOCK partners reveal differential clock control and function. Proc. Natl. Acad. Sci. U. S.A. 97, 4339-4344.
9. Zatz, M. (1994) Photoendocrine transduction in cultured chick pineal cells: IV. What do vitamin A depletion and retinaldehyde addition do to the effects of light on the melatonin rhythm? J. Neurochem. 62, 2001-2011.
10. Tu, D. C., Batten, M. L., Palczewski, K., and Van Gelder, R. N. (2004) Nonvisual photoreception in the chick iris. Science 306, 129-131.
11. Zhu, H., Yuan, Q., Briscoe, A. D., Froy, O., Casselman, A., and Reppert, S. M. (2005) The two CRYs of the butterfly. Curr. Biol. 15, R953-R954.
12. Selby, C. P., and Sancar, A. (2006) A cryptochrome/photolyase class of enzymes with single-stranded DNA-specific photolyase activity. Proc. Natl. Acad. Sci. U.S.A. 103, 17696-17700.
13. Ozturk, N., Song, S. H., Selby, C. P., and Sancar, A. (2008) Animal type 1 cryptochromes. Analysis of the redox state of the flavin cofactor by site-directed mutagenesis. J. Biol. Chem. 283, 3256-3263.
14. Ozgur, S., and Sancar, A. (2006) Analysis of autophosphorylating kinase activities of Arabidopsis and human cryptochromes. Biochemistry 45, 13369-13374. (Pubitemid 44707697)
15. Krishnamoorthy, R. R., Agarwal, P., Prasanna, G., Vopat, K., Lambert, W., Sheedlo, H. J., Pang, I. H., Shade, D., Wordinger, R. J., Yorio, T., Clark, A. F., and Agarwal, N. (2001) Characterization of a transformed rat retinal ganglion cell line. Brain Res. Mol. Brain Res. 86, 1-12.
16. Gauger, M. A., and Sancar, A. (2005) Cryptochrome, circadian cycle, cell cycle checkpoints, and cancer. Cancer Res. 65, 6828-6834. (Pubitemid 41060721)
17. Song, S. H., Ozturk, N., Denaro, T. R., Arat, N. O., Kao, Y. T., Zhu, H., Zhong, D., Reppert, S. M., and Sancar, A. (2007) Formation and function of flavin anion radical in cryptochrome 1 blue-light photoreceptor of monarch butterfly. J. Biol. Chem. 282, 17608-17612.
18. Worthington, E. N., Kavakli, I. H., Berrocal-Tito, G., Bondo, B. E., and Sancar, A. (2003) Purification and characterization of three members of the photolyase/cryptochrome family glue-light photoreceptors from Vibrio cholerae. J. Biol. Chem. 278, 39143-39154.
19. Kao, Y. T., Tan, C., Song, S. H., Ozturk, N., Li, J., Wang, L., Sancar, A., and Zhong, D. (2008) Ultrafast dynamics and anionic active states of the flavin cofactor in cryptochrome and photolyase. J. Am. Chem. Soc. 130, 7695-7701.
20. Kao, Y. T., Saxena, C., He, T. F., Guo, L., Wang, L., Sancar, A., and Zhong, D. (2008) Ultrafast dynamics of flavins in five redox states. J. Am. Chem. Soc. 130, 13132-13139.
21. Ozgur, S., and Sancar, A. (2003) Purification and properties of human blue-light photoreceptor cryptochrome 2. Biochemistry 42, 2926-2932. (Pubitemid 36331536)
22. Kume, K., Zylka, M. J., Sriram, S., Shearman, L. P., Weaver, D. R., Jin, X., Maywood, E. S., Hastings, M. H., and Reppert, S. M. (1999) mCRY1 and mCRY2 are essential components of the negative limb of the circadian clock feedback loop. Cell 98, 193-205. (Pubitemid 29344907)
23. Vitaterna, M. H., Selby, C. P., Todo, T., Niwa, H., Thompson, C., Fruechte, E. M., Hitomi, K., Thresher, R. J., Ishikawa, T., Miyazaki, J., Takahashi, J. S., and Sancar, A. (1999) Differential regulation of mammalian period genes and circadian rhythmicity by cryptochromes 1 and 2. Proc. Natl. Acad. Sci. U.S.A. 96, 12114-12119.
24. Ceriani, M. F., Darlington, T. K., Staknis, D., Mas, P., Petti, A. A., Weitz, C. J., and Kay, S. A. (1999) Light-dependent sequestration of timeless by cryptochrome. Science 285, 553-556.
25. Berndt, A., Kottke, T., Breitkreuz, H., Dvorsky, R., Hennig, S., Alexander, M., and Wolf, E. (2007) A novel photoreaction mechanism for the circadian blue light photoreceptor Drosophila cryptochrome. J. Biol. Chem. 282, 13011-13021.
26. Liu, C., Robertson, D. E., Ahmad, M., Raibekas, A. A., Jorns, M. S., Dutton, P. L., and Cashmore, A. R. (1995) Association of flavin adenine dinucleotide with the Arabidopsis blue light receptor CRY1. Science 269, 968-970
27. Zhong, D. (2007) Ultrafast catalytic processes in enzymes. Curr. Opin. Chem. Biol. 11, 174-181.
28. Sancar, A. (2003) Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors. Chem. Rev. 103, 2203-2237.
29. Sancar, A. (2008) Structure and function of photolyase and in vivo enzymology: 50th anniversary. J. Biol. Chem. 283, 32153-32157.
30. Kao, Y. T., Saxena, C., Wang, L., Sancar, A., and Zhong, D. (2005) Direct observation of thymine dimer repair in DNA by photolyase. Proc. Natl. Acad. Sci. U.S.A. 102, 16128-16132.
31. Naidoo, N., Song, W., Hunter-Ensor, M., and Sehgal, A. (1999) A role for the proteasome in the light response of the timeless clock protein. Science 285, 1737-1741. (Pubitemid 29428874)
32. Busza, A., Emery-Le, M., Rosbash, M., and Emery, P. (2004) Roles of the two Drosophila cryptochrome structural domains in circadian photoreception. Science 304, 1503-1506. (Pubitemid 38720931)
33. VanVickle-Chavez, S. J., and Van Gelder, R. N. (2007) Action spectrum of Drosophila cryptochrome. J. Biol. Chem. 282, 10561-10566.
34. Emery, P., So, W. V., Kaneko, M., Hall, J. C., and Rosbash, M. (1998) CRY, a Drosophila clock and light-regulated cryptochrome, is a major contributor to circadian rhythm resetting and photosensitivity. Cell 95, 669-679. (Pubitemid 28544128)
35. Sathyanarayanan, S., Zheng, X., Kumar, S., Chen, C. H., Chen, D., Hay, B., and Sehgal, A. (2008) Identification of novel genes involved in light-dependent CRY degradation through a genome-wide RNAi screen. Genes Dev. 22, 1522-1533. (Pubitemid 351793086)
36. Peschel, N., Chen, K. F., Szabo, G., and Stanewsky, R. (2009) Light-dependent interactions between the Drosophila circadian clock factors cryptochrome, jetlag, and timeless. Curr. Biol. 19, 241-247.
37. Harm, H., and Rupert, C. S. (1968) Analysis of photoenzymatic repair of UV lesions in DNA by single light flashes. I. In vitro studies with Haemophilus influenzae transforming DNA and yeast photoreactivating enzyme. Mutat. Res. 6, 355-370.
38. Li, Y. F., Heelis, P. F., and Sancar, A. (1991) Active site of DNA photolyase: tryptophan-306 is the intrinsic hydrogen atom donor essential for flavin radical photoreduction and DNA repair in vitro. Biochemistry 30, 6322-6329.
39. Hoang, N., Schleicher, E., Kacprzak, S., Bouly, J. P., Picot, M., Wu, W., Berndt, A., Wolf, E., Bittl, R., and Ahmad, M. (2008) Human and Drosophila cryptochromes are light activated by flavin photoreduction in living cells. PLoS Biol. 6, e160.
40. Bouly, J. P., Giovani, B., Djamei, A., Mueller, M., Zeugner, A., Dudkin, E. A., Batschauer, A., and Ahmad, M. (2003) Novel ATP-binding and autophosphorylation activity associated with Arabidopsis and human cryptochrome-1. Eur. J. Biochem. 270, 2921-2928.
41. Shalitin, D., Yu, X., Maymon, M., Mockler, T., and Lin, C. (2003) Blue light-dependent in vivo and in vitro phosphorylation of Arabidopsis cryptochrome 1. Plant Cell 15, 2421-2429. (Pubitemid 37261812)
42. Ivanchenko, M., Stanewsky, R., and Giebultowicz, J. M. (2001) Circadian photoreception in Drosophila: functions of cryptochrome in peripheral and central clocks. J. Biol. Rhythms 16, 205-215. (Pubitemid 32516195)