Coupled relaxations at the protein-water interface in the picosecond time scale

Journal of the Royal Society Interface

Volumn 6, Issue SUPPL. 5, 2009, Pages

  Paciaroni, A ^a   Cornicchi, E ^a   Marconi, M ^a   Orecchini, A ^a   Petrillo, C ^a   Haertlein, M ^b   Moulin, M ^b   Sacchetti, F ^a  

^a UNIVERSITY OF PERUGIA   (Italy)

^b INSTITUT LAUE LANGEVIN   (France)

Author keywords

Anomalous diffusion; Hydration water; Maltose binding protein; Neutron scattering

Indexed keywords

HYDROGEN; MALTOSE; NEUTRON DIFFRACTION; NEUTRON SCATTERING; NEUTRONS;

ANOMALOUS DIFFUSION; DAVIDSON; GLASSY SYSTEMS; HYDRATION WATER; HYDROGEN BOND NETWORKS; MALTOSE BINDING PROTEINS; MALTOSE-BINDING PROTEIN; PHENOMENOLOGICAL MODELS; PICOSECOND TIME SCALE; PROTEIN FLUCTUATIONS; PROTEIN SURFACE; TIME-SCALES; TWO-COMPONENT; WATER INTERFACE;

HYDRATION;

MALTOSE BINDING PROTEIN; WATER;

ACCURACY; CONFERENCE PAPER; CONTROLLED STUDY; HYDRATION; HYDRODYNAMICS; HYDROGENATION; NEUTRON SCATTERING; PROTEIN ANALYSIS; SURFACE PROPERTY; TIME SERIES ANALYSIS;

BINDING SITES; CARRIER PROTEINS; KINETICS; MALTOSE-BINDING PROTEINS; MULTIPROTEIN COMPLEXES; NEUTRON DIFFRACTION; PROTEIN BINDING; SURFACE PROPERTIES; WATER;

EID: 69949151736     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2009.0182.focus     Document Type: Conference Paper

References (37)

1. Angell, C. A. 1995 Formation of glasses from liquids and biopolymers. Science 267, 1924-1935. (doi:10.1126/science.267.5206.1924)
2. Ball, P. 2008 Water as an active constituent in cell biology. Chem. Rev. 108, 74-108. (doi:10.1021/cr068037a)
3. Bellissent-Funel, M.-C., Teixeira, J., Bradley, K. F. & Chen, S. H. 1992 Dynamics of hydration water in proteins. J. Phys. I France 2, 995-1001. (doi:10.1051/jp1:1992192)
4. Bizzarri, A. R., Paciaroni, A. & Cannistraro, S. 2000 Glasslike dynamical behavior of the plastocyanin hydration water. Phys. Rev. E 62, 3991-3999. (doi:10.1103/PhysRevE.62.3991)
5. Chen, S.-H., Liu, L., Fratini, E., Baflioni, P., Faraone, A. & Mamontov, E. 2006 Observation of fragile-to-strong dynamic crossover in protein hydration water. Proc. Natl Acad. Sci. USA 103, 9012-9016. (doi:10.1073/pnas. 0602474103)
6. Cornicchi, E., Onori, G. & Paciaroni, A. 2005 Picosecond-time- scale fluctuations of proteins in glassy matrices: the role of viscosity. Phys. Rev. Lett. 95, 158 104-158 108. (doi:10.1103/PhysRevLett.95.158104)
7. Cusack, S. & Doster, W. 1990 Temperature dependence of the low frequency dynamics of myoglobin. Measurement of the vibrational frequency distribution by inelastic neutron scattering. Biophys. J. 58, 243-251. (doi:10.1016/S0006-3495(90)82369-9)
8. Diehl, M., Doster, W., Petry, W. & Shober, H. 1997 Water-coupled low-frequency modes of myoglobin and lysozyme observed by inelastic neutron scattering. Biophys. J. 73, 2726-2732. (doi:10.1016/S0006-3495(97)78301-2) (Pubitemid 27471481)
9. Doster, W., Cusack, S. & Petry, W. 1990 Dynamic instability of liquidlike motions in a globular protein observed by inelastic neutron scattering. Phys. Rev. Lett. 65, 1080-1083. (doi:10.1103/PhysRevLett.65.1080)
10. Elliott, S. R. 1992 A unified model for the low-energy vibrational behaviour of amorphous solids. Europhys. Lett. 19, 201-206. (doi:10.1209/0295- 5075/19/3/009)
11. Frick, B. & Richter, D. 1993 Change of the vibrational dynamics near the glass transition in polyisobutylene: inelastic neutron scattering on a nonfragile polymer. Phys. Rev. B 47, 14 795-14 804. (doi:10.1103/PhysRevB.47. 14795)
12. Fuchs, M., Hofacker, I. & Latz, A. 1992 Primary relaxation in a hard sphere system. Phys. Rev. A 45, 898-902. (doi:10.1103/PhysRevA.45.898)
13. Gotze, W. 1998 The essentials of the mode-coupling theory for glassy dynamics. Condens. Matter Phys. 4, 873-904.
14. Gregory, R. B. 1995 Protein solvent interactions. New York, NY: Marcel Dekker.
15. Iben, I. E. T. et al. 1989 Glassy behavior of a protein. Phys. Rev. Lett. 62, 1916-1919. (doi:10.1103/PhysRevLett.62.1916)
16. Lovesey, S. W. 1986 Theory of neutron scattering from condensed matter. Oxford, UK: Clarendon.
17. Mattea, C., Qvist, J. & Halle, B. 2008 Dynamics at the protein water interface from 17O spin relaxation in deeply supercooled solutions. Biophys. J 95, 2951-2963. (doi:10.1529/biophysj.108.135194)
18. Medintz, I. L. & Deschamps, J. R. 2006 Maltose-binding protein: a versatile platform for prototyping biosensing. Curr. Opin. Biotech. 17, 17-27. (doi:10.1016/j.copbio.2006.01.002)
19. Nesius, T., Didone, I., Sokolov, I. M. & Smith, J. C. 2008 Subdiffusion in peptides originates from the fractal-like structure of configuration space. Phys. Rev. Lett. 100, 188 103.
20. Orecchini, A., Paciaroni, A., De Francesco, A., Petrillo, C. & Sacchetti, F. 2009 Collective dynamics of protein hydration water by brillouin neutron spectroscopy. J. Am. Chem. Soc 131, 4664-4669. (doi:10.1021/ja807957p)
21. Paciaroni, A., Stroppolo, M. E., Arcangeli, C., Bizzarri, A. R., Desideri, A. & Cannistraro, S. 1999 Incoherent neutron scattering of copper azurin: a comparison with molecular dynamics simulation results. Biophys. J. 28, 447-456.
22. Paciaroni, A., Cinelli, S. & Onori, G. 2002 Effect of the environment on the protein dynamical transition: a neutron scattering study. Biophys. J. 83, 1157-1164. (doi:10.1016/S0006-3495(02)75239-9) (Pubitemid 34803646)
23. Paciaroni, A. et al. 2008 Fingerprints of amorphous icelike behavior in the vibrational density of states of protein hydration water. Phys. Rev. Lett. 101, 148 104-148 108. (doi:10.1103/PhysRevLett.101.148104)
24. Renker, B. 1971 International conference on phonons (ed. M. A. Nusimovic), pp. 167-170. Paris, France: Flammarion.
25. Sakamoto, M., Brockhouse, B. N., Johnson, R. H. & Pope, N. K. 1962 Neutron inelastic study of water. J. Phys. Soc. Japan 17, 370-373.
26. Schober, H., Koza, M., Tölle, A., Fujara, F., Angell, C. A. & Böhmer, R. 1998 Amorphous polymorphism in ice investigated by inelastic neutron scattering. Phys. B Cond. Matt. 897, 241-243. (doi:10.1016/S0921- 4526(97)00749-7)
27. Sciortino, F., Gallo, P., Tartaglia, P. & Chen, S.-H. 1996 Supercooled water and the kinetic glass transition. Phys. Rev. E 54, 6331-6343. (doi:10.1103/PhysRevE.54.6331)
28. Settles, M. & Doster, W. 1996 Anomalous diffusion of adsorbed water: a neutron scattering study of hydrated myoglobin. Faraday Discuss. 103, 269-279. (doi:10.1039/fd9960300269) (Pubitemid 126459160)
29. Sokolov, A., Hurst, J. & Quitmann, A. 1995 Dynamics of super-cooled water: mode-coupling theory approach. Phys. Rev. B 51, 12 865-12 868. (doi:10.1103/PhysRevB.51.12865)
30. Sokolov, A., Grimm, H. & Kahn, R. 1999 Glassy dynamics in DNA: ruled by water of hydration? J. Chem. Phys 110, 7053-7057. (doi:10.1063/1.478610)
31. Spurlino, J. C., Lu, G. Y. & Quiocho, F. A. 1991 The 2.3-A resolution structure of the maltose- or maltodextrin-binding protein, a primary receptor of bacterial active transport and chemotaxis. J. Biol. Chem. 266, 5202-15019
32. Tarek, M. & Tobias, D. J. 2001 Effects of solvent damping on side chain and backbone contributions to the protein boson peak. J. Chem. Phys. 115, 1607-1612. (doi:10.1063/1.1380708)
33. Tarek, M. & Tobias, D. J. 2002 Role of protein-water hydrogen bond dynamics in the protein dynamical transition. Phys. Rev. Lett. 88, 138 101-138 105. (doi:10.1103/PhysRevLett.88.138101)
34. Vitkup, D., Ringe, D., Petsko, G. A. & Karplus, M. 2000 Solvent mobility and the protein 'glass' transition. Nat. Struct. Biol. 7, 34-38. (doi:10.1038/71231)
35. Walrafen, G. E., Chu, Y. C. & Piermarini, G. J. 1996 Low-frequency Raman Scattering from Water at High Pressures and High Temperature. J. Phys. Chem. 100, 10 363-10 372. (doi:10.1021/jp960140o)
36. Weik, M., Lehnert, U. & Zaccai, G. 2005 Liquid-like water confined in stacks of biological membranes at 200 K and its relation to protein dynamics. Biophys. J. 89, 3639-3646. (doi:10.1529/biophysj.104.055749) (Pubitemid 41637971)
37. Wood, K., Frolich, A., Paciaroni, A., Moulin, M., Härtlein, M., Zaccaï, G., Tobias, D. J. & Weik, M. 2008 Coincidence of dynamical transitions in a soluble protein and its hydration water: direct measurements by neutron scattering and MD simulations. J. Am. Chem. Soc. 130, 4586-4587. (doi:10.1021/ja710526r)