A β-L-arabinopyranosidase from streptomyces avermitilis is a novel member of glycoside hydrolase family 27

Journal of Biological Chemistry

Volumn 284, Issue 37, 2009, Pages 25097-25105

  Ichinose, Hitomi ^a   Fujimoto, Zui ^b   Honda, Mariko ^a   Harazono, Koichi ^c   Nishimoto, Yukifumi ^c   Uzura, Atsuko ^c   Kaneko, Satoshi ^a  

^a NATIONAL FOOD RESEARCH INSTITUTE   (Japan)

^b NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^c Osaka City University Medical School   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SUBSTITUTION; ARABINOGALACTAN; ARABINOGALACTAN PROTEINS; ASPARTIC ACIDS; CARBOHYDRATE-BINDING MODULES; CATALYTIC DOMAINS; CATALYTIC MODULES; COMPLEX MOLECULES; CULTURE SUPERNATANT; D-GALACTOSE; EXPRESSION SYSTEM; GALACTOPYRANOSIDE; GALACTOSIDASES; GLUTAMIC ACID; GLYCOSIDE HYDROLASES; GUM ARABIC; HYDROXYMETHYL GROUPS; IN-PLANTS; L-ARABINOSE; NEW MEMBERS; PLANT CELLS; PRIMARY STRUCTURES; PROTEOGLYCANS; RECOMBINANT PROTEIN; SPECIFIC ACTIVITY; STREPTOMYCES AVERMITILIS; X-RAY CRYSTALLOGRAPHIC ANALYSIS;

AMINES; AMINO ACIDS; CELL CULTURE; CELL MEMBRANES; ENZYMES; METHANOL; ORGANIC ACIDS; PLANT LIFE EXTENSION; PLANTS (BOTANY); SUGARS;

ENZYME ACTIVITY;

ALPHA GALACTOSIDASE; ARABINOSE; ASPARTIC ACID; BETA ARABINOPYRANOSIDASE; GLUTAMIC ACID; GLYCOSIDASE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; ARTICLE; BACTERIAL STRAIN; CONTROLLED STUDY; ENZYME ACTIVITY; MUTAGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN EXPRESSION; STREPTOMYCES; STREPTOMYCES AVERMITILIS; SUPERNATANT; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; CATALYTIC DOMAIN; CLONING, MOLECULAR; CRYSTALLOGRAPHY, X-RAY; GENE EXPRESSION REGULATION, BACTERIAL; GLYCOSIDE HYDROLASES; MOLECULAR SEQUENCE DATA; MUTAGENESIS; POLYSACCHARIDES; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; STREPTOMYCES; SUBSTRATE SPECIFICITY;

ACACIA SENEGAL; BACTERIA (MICROORGANISMS); LARIX; STREPTOMYCES; STREPTOMYCES AVERMITILIS;

EID: 69949118732     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.022723     Document Type: Article

References (37)

1. Fincher, G. B., Sawyer, W. H., and Stone, B. A. (1974) Biochem. J. 139, 535-545
2. Gaspar, Y., Johnson, K. L., McKenna, J. A., Bacic, A., and Schultz, C. J. (2001) Plant Mol. Biol. 47, 161-176
3. Aspinall, G. O. (1969) Adv. Carbohydr. Chem. Biochem. 24, 333-379
4. Knox, J. P. (1995) FASEB J. 9, 1004-1012
5. Goodrum, L. J., Patel, A., Leykam, J. F., and Kieliszewski, M. J. (2000) Phytochemistry 54, 99-106
6. Seifert, G. J., and Roberts, K. (2007) Annu. Rev. Plant Biol. 58, 137-161
7. Ichinose, H., Yoshida, M., Kotake, T., Kuno, A., Igarashi, K., Tsumuraya, Y., Samejima, M., Hirabayashi, J., Kobayashi, H., and Kaneko, S. (2005) J. Biol. Chem. 280, 25820-25829
8. Kotake, T., Kaneko, S., Kubomoto, A., Haque, M. A., Kobayashi, H., and Tsumuraya, Y. (2004) Biochem. J. 377, 749-755
9. Cantarel, B. L., Coutinho, P. M., Rancurel, C., Bernard, T., Lombard, V., and Henrissat, B. (2009) Nucleic Acids Res. 37, D233-D238
10. Ichinose, H., Kotake, T., Tsumuraya, Y., and Kaneko S. (2006) Biosci. Biotechnol. Biochem. 70, 2745-2750
11. Ichinose, H., Kotake, T., Tsumuraya, Y., and Kaneko, S. (2008) Appl. Environ. Microbiol. 74, 2379-2383
12. Dey, P. M. (1973) Biochim. Biophys. Acta 302, 393-398
13. Dey, P. M. (1983) Biochim. Biophys. Acta 746, 8-13
14. Yang, H., Ichinose, H., Nakajima, M., Kobayashi, H., and Kaneko, S. (2006) Food Sci. Technol. Res. 12, 43-49
15. Yoshida, M., Liu, Y., Uchida, S., Kawarada, K., Ukagami, Y., Ichinose, H., Kaneko, S., and Fukuda, K. (2008) Biosci. Biotechnol. Biochem. 72, 805-810
16. Laemmli, U. K. (1970) Nature 227, 680-685
17. Fujimoto, Z., Ichinose, H., Harazono, K., Honda, M., Uzura, A., and Kaneko, S. (2009) Acta Crystallogr. F Struct. Biol. Cryst. Commun. 65, 632-634
18. Hatanaka, T., Onaka, H., Arima, J., Uraji, M., Uesugi, Y., Usuki, H., Nishimoto, Y., and Iwabuchi, M. (2008) Protein Expr. Purif. 62, 244-248
19. Ito, S., Kuno, A., Suzuki, R., Kaneko, S., Kawabata, Y., Kusakabe, I., and Hasegawa, T. (2004) J. Biotechnol. 110, 137-142
20. Ichinose, H., Yoshida, M., Fujimoto, Z., and Kaneko, S. (2008) Appl. Microbiol. Biotechnol. 80, 399-408
21. Somogyi, M. (1952) J. Biol. Chem. 195, 19-23
22. Yao, M., Yasutake, Y., and Tanaka, I. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 39-45
23. Matthews, B. W. (1968) J. Mol. Biol. 33, 491-497
24. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
25. Fujimoto, Z., Kaneko, S., Momma, M., Kobayashi, H., and Mizuno, H. (2003) J. Biol. Chem. 278, 20313-20318
26. Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., and Mizuno, H. (2002) J. Mol. Biol. 316, 65-78
27. Vagin, A., and Teplyakov, A. (1997) J. Appl. Crystallogr. 30, 1022-1025
28. Collaborative Computational Project, Number 4 (1994) Acta Crystallogr. D Biol. Crystallogr. 50, 760-763
29. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. D Biol. Crystallogr. 53, 240-255
30. Cohen, S. X., Morris, R. J., Fernandez, F. J., Ben Jelloul, M., Kakaris, M., Parthasarathy, V., Lamzin, V. S., Kleywegt, G. J., and Perrakis, A. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 2222-2229
31. Emsley, P., and Cowtan, K. (2004) Acta Crystallogr. D Biol. Crystallogr. 60, 2126-2132
32. Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) J. Appl. Crystallogr. 26, 283-291
33. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
34. Merritt, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-524
35. Odonmazig, P., Ebringerová, A., Machová, E., and Alföldi, J. (1994) Carbohydr. Res. 252, 317-324
36. Boraston, A. B., Tomme, P., Amandoron, E. A., and Kilburn, D. G. (2000) Biochem. J. 350, 933-941
37. Bauer, S., Vasu, P., Persson, S., Mort, A. J., and Somerville, C. R. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 11417-11422