메뉴 건너뛰기




Volumn 7, Issue , 2009, Pages

Identification of protein functions using a machine-learning approach based on sequence-derived properties

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; BIOLOGICAL ACTIVITY; CELL COMPOSITION; COMPUTER PREDICTION; CONTROLLED STUDY; MATHEMATICAL COMPUTING; MOLECULAR MODEL; PROTEIN ANALYSIS; PROTEIN FUNCTION; RANDOM FOREST; SENSITIVITY AND SPECIFICITY; STRUCTURAL HOMOLOGY; SUPPORT VECTOR MACHINE;

EID: 69549097716     PISSN: None     EISSN: 14775956     Source Type: Journal    
DOI: 10.1186/1477-5956-7-27     Document Type: Article
Times cited : (43)

References (82)
  • 3
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • 280013 3162770
    • Pearson WR Lipman DJ Improved tools for biological sequence comparison Proc Natl Acad Sci USA 1988, 85:2444-2448 280013 3162770
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 4
    • 0034040754 scopus 로고    scopus 로고
    • Functional inferences from reconstructed evolutionary biology involving rectified databases - An evolutionarily grounded approach to functional genomics
    • 10865954
    • Benner SA Chamberlin SG Liberles DA Govindarajan S Knecht L Functional inferences from reconstructed evolutionary biology involving rectified databases - an evolutionarily grounded approach to functional genomics Res Microbiol 2000, 151:97-106 10865954
    • (2000) Res Microbiol , vol.151 , pp. 97-106
    • Benner, S.A.1    Chamberlin, S.G.2    Liberles, D.A.3    Govindarajan, S.4    Knecht, L.5
  • 5
    • 1442275650 scopus 로고    scopus 로고
    • Enzyme family classification by support vector machines
    • 14997540
    • Cai CZ Han LY Ji ZL Chen X Chen YZ Enzyme family classification by support vector machines Proteins 2004, 55:66-76 14997540
    • (2004) Proteins , vol.55 , pp. 66-76
    • Cai, C.Z.1    Han, L.Y.2    Ji, Z.L.3    Chen, X.4    Chen, Y.Z.5
  • 6
    • 9644283060 scopus 로고    scopus 로고
    • Predicting enzyme class from protein structure without alignments
    • 15567421
    • Dobson PD Doig AJ Predicting enzyme class from protein structure without alignments J Mol Biol 2005, 345:187-199 15567421
    • (2005) J Mol Biol , vol.345 , pp. 187-199
    • Dobson, P.D.1    Doig, A.J.2
  • 7
    • 13444251475 scopus 로고    scopus 로고
    • Predicting functional family of novel enzymes irrespective of sequence similarity: A statistical learning approach
    • 535691 15585667
    • Han LY Cai CZ Ji ZL Cao ZW Cui J Chen YZ Predicting functional family of novel enzymes irrespective of sequence similarity: A statistical learning approach Nucleic Acids Res 2004, 32:6437-6444 535691 15585667
    • (2004) Nucleic Acids Res , vol.32 , pp. 6437-6444
    • Han, L.Y.1    Cai, C.Z.2    Ji, Z.L.3    Cao, Z.W.4    Cui, J.5    Chen, Y.Z.6
  • 8
    • 0042235504 scopus 로고    scopus 로고
    • Automated data-driven discovery of motif-based protein function classifiers
    • Wang X Schroeder D Dobbs D Honavar V Automated data-driven discovery of motif-based protein function classifiers Inf Sci 2003, 155:1-18
    • (2003) Inf Sci , vol.155 , pp. 1-18
    • Wang, X.1    Schroeder, D.2    Dobbs, D.3    Honavar, V.4
  • 9
    • 0036130770 scopus 로고    scopus 로고
    • Classification of G-protein coupled receptors by alignment-independent extraction of principal chemical properties of primary amino acid sequences
    • 2373523 11910023
    • Lapinsh M Gutcaits A Prusis P Post C Lundstedt T Wikberg JES Classification of G-protein coupled receptors by alignment-independent extraction of principal chemical properties of primary amino acid sequences Protein Sci 2002, 11:795-805 2373523 11910023
    • (2002) Protein Sci , vol.11 , pp. 795-805
    • Lapinsh, M.1    Gutcaits, A.2    Prusis, P.3    Post, C.4    Lundstedt, T.5    Wikberg, J.E.S.6
  • 10
    • 0032962457 scopus 로고    scopus 로고
    • Twilight zone of protein sequence alignments
    • 10195279
    • Rost B Twilight zone of protein sequence alignments Protein Eng 1999, 12:85-94 10195279
    • (1999) Protein Eng , vol.12 , pp. 85-94
    • Rost, B.1
  • 11
    • 0029115481 scopus 로고
    • A sequence property approach to searching protein databases
    • 7650738
    • Hobohm U Sander C A sequence property approach to searching protein databases J Mol Biol 1995, 251:390-399 7650738
    • (1995) J Mol Biol , vol.251 , pp. 390-399
    • Hobohm, U.1    Sander, C.2
  • 12
    • 0027051606 scopus 로고
    • Specificity mapping of cellulolytic enzymes: Classification into families of structurally related proteins confirmed by biochemical analysis
    • 2142096 1303748
    • Claeyssens M Henrissat B Specificity mapping of cellulolytic enzymes: classification into families of structurally related proteins confirmed by biochemical analysis Protein Sci 1992, 1:1293-1297 2142096 1303748
    • (1992) Protein Sci , vol.1 , pp. 1293-1297
    • Claeyssens, M.1    Henrissat, B.2
  • 13
    • 0031797096 scopus 로고    scopus 로고
    • What we do not know about sequence analysis and sequence database
    • 10366280
    • Karp PD What we do not know about sequence analysis and sequence database Bioinformatics 1998, 14:753-754 10366280
    • (1998) Bioinformatics , vol.14 , pp. 753-754
    • Karp, P.D.1
  • 14
    • 34248155322 scopus 로고    scopus 로고
    • Function prediction of uncharacterized proteins
    • 17477489
    • Hawkins T Kihara D Function prediction of uncharacterized proteins J Bioinform Comput Biol 2007, 5:1-30 17477489
    • (2007) J Bioinform Comput Biol , vol.5 , pp. 1-30
    • Hawkins, T.1    Kihara, D.2
  • 15
    • 0028871926 scopus 로고
    • Dali: A network tool for protein structure comparison
    • 8578593
    • Holm L Sander C Dali: A network tool for protein structure comparison Trends Biochem Sci 1995, 20:478-480 8578593
    • (1995) Trends Biochem Sci , vol.20 , pp. 478-480
    • Holm, L.1    Sander, C.2
  • 16
    • 0041620359 scopus 로고    scopus 로고
    • MATRAS: A program for protein 3D structure comparison
    • 168987 12824329
    • Kawabata T MATRAS: A program for protein 3D structure comparison Nucleic Acids Res 2003, 31:3367-3369 168987 12824329
    • (2003) Nucleic Acids Res , vol.31 , pp. 3367-3369
    • Kawabata, T.1
  • 17
    • 0034531045 scopus 로고    scopus 로고
    • Protein structure comparison and structure patterns
    • 11153094
    • Eidhammer I Jonassen I Taylor WR Protein structure comparison and structure patterns J Comput Biol 2000, 7:685-716 11153094
    • (2000) J Comput Biol , vol.7 , pp. 685-716
    • Eidhammer, I.1    Jonassen, I.2    Taylor, W.R.3
  • 18
    • 33748776559 scopus 로고    scopus 로고
    • Automated protein function prediction-the genomic challenge
    • 16772267
    • Friedberg I Automated protein function prediction-the genomic challenge Brief Bioinformatics 2006, 7:225-242 16772267
    • (2006) Brief Bioinformatics , vol.7 , pp. 225-242
    • Friedberg, I.1
  • 19
    • 0031909873 scopus 로고    scopus 로고
    • Recognition of analogous and homologous protein folds - Assessment of prediction success and associated alignment accuracy using empirical substitution matrices
    • 9579654
    • Russell RB Saqi MA Bates PA Sayle RA Sternberg MJ Recognition of analogous and homologous protein folds - assessment of prediction success and associated alignment accuracy using empirical substitution matrices Protein Eng 1998, 11:1-9 9579654
    • (1998) Protein Eng , vol.11 , pp. 1-9
    • Russell, R.B.1    Saqi, M.A.2    Bates, P.A.3    Sayle, R.A.4    Sternberg, M.J.5
  • 20
    • 47649109030 scopus 로고    scopus 로고
    • Enzyme function prediction with interpretable models
    • New York: Humana Press Samudrala R, McDermott J, Bumgarner R
    • Syed U Yona G Enzyme function prediction with interpretable models Computational Systems Biology New York: Humana Press Samudrala R, McDermott J, Bumgarner R 2007, 1-33
    • (2007) Computational Systems Biology , pp. 1-33
    • Syed, U.1    Yona, G.2
  • 22
    • 0042622243 scopus 로고    scopus 로고
    • SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence
    • 169006 12824396
    • Cai CZ Han LY Ji ZL Chen X Chen YZ SVM-Prot: Web-based support vector machine software for functional classification of a protein from its primary sequence Nucleic Acids Res 2003, 31:3692-3697 169006 12824396
    • (2003) Nucleic Acids Res , vol.31 , pp. 3692-3697
    • Cai, C.Z.1    Han, L.Y.2    Ji, Z.L.3    Chen, X.4    Chen, Y.Z.5
  • 24
    • 0036892449 scopus 로고    scopus 로고
    • Prediction of novel archaeal enzymes from sequence-derived features
    • Jensen LJ Skovgaard M Brunak S Prediction of novel archaeal enzymes from sequence-derived features Protein Sci 2002, 3:2894-2898
    • (2002) Protein Sci , vol.3 , pp. 2894-2898
    • Jensen, L.J.1    Skovgaard, M.2    Brunak, S.3
  • 25
    • 0035882573 scopus 로고    scopus 로고
    • PRED-CLASS: Cascading neural networks for generalized protein classification and genome-wide applications
    • 11455609
    • Pasquier C Promponas VJ Hamodrakas SJ PRED-CLASS: Cascading neural networks for generalized protein classification and genome-wide applications Proteins 2001, 44:361-369 11455609
    • (2001) Proteins , vol.44 , pp. 361-369
    • Pasquier, C.1    Promponas, V.J.2    Hamodrakas, S.J.3
  • 26
    • 2542586190 scopus 로고    scopus 로고
    • Prediction of the bonding states of cysteines using the support vector machines based on multiple feature vectors and cysteine state sequences
    • 15146500
    • Chen YC Lin YS Lin CJ Hwang JK Prediction of the bonding states of cysteines using the support vector machines based on multiple feature vectors and cysteine state sequences Proteins 2004, 55:1036-1042 15146500
    • (2004) Proteins , vol.55 , pp. 1036-1042
    • Chen, Y.C.1    Lin, Y.S.2    Lin, C.J.3    Hwang, J.K.4
  • 27
    • 0037103004 scopus 로고    scopus 로고
    • Prediction of protein solvent accessibility using support vector machines
    • 12112679
    • Yuan Z Burrage K Mattick JS Prediction of protein solvent accessibility using support vector machines Proteins 2002, 48:566-570 12112679
    • (2002) Proteins , vol.48 , pp. 566-570
    • Yuan, Z.1    Burrage, K.2    Mattick, J.S.3
  • 28
    • 84889854831 scopus 로고    scopus 로고
    • Integrating information for protein function prediction
    • Weinheim: Wiley-VCH Verlag GmbH & Co KGaA Lengauer T
    • Noble WS Ben-Hur A Integrating information for protein function prediction Bioinformatics-From Genomes to Therapies Weinheim: Wiley-VCH Verlag GmbH & Co KGaA Lengauer T 2007, 1297-1314
    • (2007) Bioinformatics-From Genomes to Therapies , pp. 1297-1314
    • Noble, W.S.1    Ben-Hur, A.2
  • 29
    • 0041736652 scopus 로고    scopus 로고
    • Protein function classification via support vector machine approach
    • 12941532
    • Cai CZ Wang WL Sun LZ Chen YZ Protein function classification via support vector machine approach Math Biosci 2003, 185:111-122 12941532
    • (2003) Math Biosci , vol.185 , pp. 111-122
    • Cai, C.Z.1    Wang, W.L.2    Sun, L.Z.3    Chen, Y.Z.4
  • 30
  • 31
    • 0041743078 scopus 로고    scopus 로고
    • Distinguishing enzyme structures from non-enzymes without alignments
    • 12850146
    • Dobson PD Doig AJ Distinguishing enzyme structures from non-enzymes without alignments J Mol Biol 2003, 330:771-783 12850146
    • (2003) J Mol Biol , vol.330 , pp. 771-783
    • Dobson, P.D.1    Doig, A.J.2
  • 32
    • 33644630561 scopus 로고    scopus 로고
    • FRANKSUM: New feature selection method for protein function prediction
    • Al-Shahib A Breitling R Gilbert D FRANKSUM: New feature selection method for protein function prediction Int J Neural Syst 2005, 15:250-275
    • (2005) Int J Neural Syst , vol.15 , pp. 250-275
    • Al-Shahib, A.1    Breitling, R.2    Gilbert, D.3
  • 33
    • 27344448597 scopus 로고    scopus 로고
    • Feature selection and the class imbalance problem in predicting protein function from sequence
    • 16231961
    • Al-Shahib A Breitling R Gilbert D Feature selection and the class imbalance problem in predicting protein function from sequence Appl Bioinformatics 2005, 4:195-203 16231961
    • (2005) Appl Bioinformatics , vol.4 , pp. 195-203
    • Al-Shahib, A.1    Breitling, R.2    Gilbert, D.3
  • 35
    • 39749147033 scopus 로고    scopus 로고
    • Protein classification with imbalanced data
    • 18076026
    • Zhao XM Li X Chen L Aihara K Protein classification with imbalanced data Proteins 2008, 70:1125-1132 18076026
    • (2008) Proteins , vol.70 , pp. 1125-1132
    • Zhao, X.M.1    Li, X.2    Chen, L.3    Aihara, K.4
  • 36
    • 0035014847 scopus 로고    scopus 로고
    • Multi-class protein fold recognition using support vector machines and neural networks
    • 11301304
    • Ding CH Dubchak I Multi-class protein fold recognition using support vector machines and neural networks Bioinformatics 2001, 17:349-358 11301304
    • (2001) Bioinformatics , vol.17 , pp. 349-358
    • Ding, C.H.1    Dubchak, I.2
  • 37
    • 34748889938 scopus 로고    scopus 로고
    • Proteome-wide prediction of novel DNA/RNA-binding proteins using amino acid composition and periodicity in the hyperthermophilic archaeon Pyrococcus furiosus
    • 17573465
    • Fujishima K Komasa M Kitamura S Suzuki H Tomita M Kanai A Proteome-wide prediction of novel DNA/RNA-binding proteins using amino acid composition and periodicity in the hyperthermophilic archaeon Pyrococcus furiosus DNA Res 2007, 14:91-102 17573465
    • (2007) DNA Res , vol.14 , pp. 91-102
    • Fujishima, K.1    Komasa, M.2    Kitamura, S.3    Suzuki, H.4    Tomita, M.5    Kanai, A.6
  • 39
    • 46149114940 scopus 로고    scopus 로고
    • The combination approach of SVM and ECOC for powerful identification and classification of transcription factor
    • 2440765 18554421
    • Zheng G Qian Z Yang Q Wei C Xie L Zhu Y Li Y The combination approach of SVM and ECOC for powerful identification and classification of transcription factor BMC Bioinformatics 2008, 9:282 2440765 18554421
    • (2008) BMC Bioinformatics , vol.9 , pp. 282
    • Zheng, G.1    Qian, Z.2    Yang, Q.3    Wei, C.4    Xie, L.5    Zhu, Y.6    Li, Y.7
  • 40
    • 48249145694 scopus 로고    scopus 로고
    • Computational identification of ubiquitylation sites from protein sequences
    • 2488362 18625080
    • Tung CW Ho SY Computational identification of ubiquitylation sites from protein sequences BMC Bioinformatics 2008, 9:310 2488362 18625080
    • (2008) BMC Bioinformatics , vol.9 , pp. 310
    • Tung, C.W.1    Ho, S.Y.2
  • 41
    • 44849090379 scopus 로고    scopus 로고
    • A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scale data model
    • 2409339 18489778
    • Judson R Elloumi F Setzer RW Li Z Shah I A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scale data model BMC Bioinformatics 2008, 9:241 2409339 18489778
    • (2008) BMC Bioinformatics , vol.9 , pp. 241
    • Judson, R.1    Elloumi, F.2    Setzer, R.W.3    Li, Z.4    Shah, I.5
  • 42
    • 39849091628 scopus 로고    scopus 로고
    • VirulentPred: A SVM based prediction method for virulent proteins in bacterial pathogens
    • 2254373 18226234
    • Garg A Gupta D VirulentPred: A SVM based prediction method for virulent proteins in bacterial pathogens BMC Bioinformatics 2008, 9:62 2254373 18226234
    • (2008) BMC Bioinformatics , vol.9 , pp. 62
    • Garg, A.1    Gupta, D.2
  • 43
    • 38649127567 scopus 로고    scopus 로고
    • Identification of DNA-binding proteins using support vector machines and evolutionary profiles
    • 2216048 18042272
    • Kumar M Gromiha MM Raghava GPS Identification of DNA-binding proteins using support vector machines and evolutionary profiles BMC Bioinformatics 2007, 8:463 2216048 18042272
    • (2007) BMC Bioinformatics , vol.8 , pp. 463
    • Kumar, M.1    Gromiha, M.M.2    Raghava, G.P.S.3
  • 44
    • 38649097852 scopus 로고    scopus 로고
    • A machine learning approach for the identification of odorant binding proteins from sequence-derived properties
    • 2216042 17880712
    • Pugalenthi G Tang K Suganthan PN Archunan G Sowdhamini R A machine learning approach for the identification of odorant binding proteins from sequence-derived properties BMC Bioinformatics 2007, 8:351 2216042 17880712
    • (2007) BMC Bioinformatics , vol.8 , pp. 351
    • Pugalenthi, G.1    Tang, K.2    Suganthan, P.N.3    Archunan, G.4    Sowdhamini, R.5
  • 45
    • 36349010717 scopus 로고    scopus 로고
    • Prediction of potential drug targets based on simple sequence properties
    • 2082046 17883836
    • Li Q Lai L Prediction of potential drug targets based on simple sequence properties BMC Bioinformatics 2007, 8:353 2082046 17883836
    • (2007) BMC Bioinformatics , vol.8 , pp. 353
    • Li, Q.1    Lai, L.2
  • 46
    • 28944450149 scopus 로고    scopus 로고
    • Prediction of protein-protein interactions using random decision forest framework
    • 16234318
    • Chen XW Liu M Prediction of protein-protein interactions using random decision forest framework Bioinformatics 2005, 21:4394-4400 16234318
    • (2005) Bioinformatics , vol.21 , pp. 4394-4400
    • Chen, X.W.1    Liu, M.2
  • 49
    • 52249116089 scopus 로고    scopus 로고
    • The FEATURE framework for protein function annotation: Modelling new functions, improving performance, and extending to novel applications
    • Halperin I Glazer DS Wu S Altman RB The FEATURE framework for protein function annotation: Modelling new functions, improving performance, and extending to novel applications BMC Genomics 2008, 16:9
    • (2008) BMC Genomics , vol.16 , pp. 9
    • Halperin, I.1    Glazer, D.S.2    Wu, S.3    Altman, R.B.4
  • 50
    • 33750488443 scopus 로고    scopus 로고
    • Towards the identification of essential genes using targeted genome sequencing and comparative analysis
    • 1624830 17052348
    • Gustafson AM Snitkin ES Parker SCJ DeLisi C Kasif S Towards the identification of essential genes using targeted genome sequencing and comparative analysis BMC Genomics 2006, 7:265 1624830 17052348
    • (2006) BMC Genomics , vol.7 , pp. 265
    • Gustafson, A.M.1    Snitkin, E.S.2    Parker, S.C.J.3    DeLisi, C.4    Kasif, S.5
  • 52
    • 38849163717 scopus 로고    scopus 로고
    • Glycosylation site prediction using ensembles of support vector machine classifiers
    • 2220009 17996106
    • Caragea C Sinapov J Silvescu A Bobbs D Honavar V Glycosylation site prediction using ensembles of support vector machine classifiers BMC Bioinformatics 2007, 8:438 2220009 17996106
    • (2007) BMC Bioinformatics , vol.8 , pp. 438
    • Caragea, C.1    Sinapov, J.2    Silvescu, A.3    Bobbs, D.4    Honavar, V.5
  • 53
    • 46149101211 scopus 로고    scopus 로고
    • Classification of premalignant pancreatic cancer mass-spectrometry data using decision tree ensembles
    • 2440392 18547427
    • Ge G Wong GW Classification of premalignant pancreatic cancer mass-spectrometry data using decision tree ensembles BMC Bioinformatics 2008, 9:275 2440392 18547427
    • (2008) BMC Bioinformatics , vol.9 , pp. 275
    • Ge, G.1    Wong, G.W.2
  • 55
    • 48549094895 scopus 로고    scopus 로고
    • A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification
    • 2492881 18647401
    • Statnikov A Wang L Aliferis CF A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification BMC Bioinformatics 2008, 9:319 2492881 18647401
    • (2008) BMC Bioinformatics , vol.9 , pp. 319
    • Statnikov, A.1    Wang, L.2    Aliferis, C.F.3
  • 56
    • 0035815113 scopus 로고    scopus 로고
    • Evolution of function in protein superfamilies, from a structural perspective
    • 11286560
    • Todd AE Orengo CA Thornton JM Evolution of function in protein superfamilies, from a structural perspective J Mol Biol 2001, 307:1113-1143 11286560
    • (2001) J Mol Biol , vol.307 , pp. 1113-1143
    • Todd, A.E.1    Orengo, C.A.2    Thornton, J.M.3
  • 57
    • 0032893084 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
    • 148094 9847139
    • Bairoch A Apweiler R The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999 Nucleic Acids Res 1999, 27:49-54 148094 9847139
    • (1999) Nucleic Acids Res , vol.27 , pp. 49-54
    • Bairoch, A.1    Apweiler, R.2
  • 58
    • 0036677719 scopus 로고    scopus 로고
    • The EBI SRS server - New features
    • 12176845
    • Zdobnov EM Lopez R Apweiler R The EBI SRS server - new features Bioinformatics 2002, 18:1149-1150 12176845
    • (2002) Bioinformatics , vol.18 , pp. 1149-1150
    • Zdobnov, E.M.1    Lopez, R.2    Apweiler, R.3
  • 60
    • 0036529501 scopus 로고    scopus 로고
    • A positively charged residue of φ29 DNA polymerase, highly conserved in DNA polymerases from families A and B, is involved in binding the incoming nucleotide
    • 101840 11917008
    • Truniger V Lazaro JM Esteban FJ Blanco L Salas M A positively charged residue of φ29 DNA polymerase, highly conserved in DNA polymerases from families A and B, is involved in binding the incoming nucleotide Nucleic Acids Res 2002, 30:1483-1492 101840 11917008
    • (2002) Nucleic Acids Res , vol.30 , pp. 1483-1492
    • Truniger, V.1    Lazaro, J.M.2    Esteban, F.J.3    Blanco, L.4    Salas, M.5
  • 61
    • 0036568353 scopus 로고    scopus 로고
    • Classification of proteins based on the properties of the ligand-binding site: The case of adenine-binding proteins
    • 11933058
    • Cappello V Tramontano A Koch U Classification of proteins based on the properties of the ligand-binding site: The case of adenine-binding proteins Proteins 2002, 47:106-115 11933058
    • (2002) Proteins , vol.47 , pp. 106-115
    • Cappello, V.1    Tramontano, A.2    Koch, U.3
  • 62
    • 2942734703 scopus 로고    scopus 로고
    • Benefitting from the variables that variable selection discards
    • Caruana R de Sa VR Benefitting from the variables that variable selection discards J Mach Learn Res 2003, 3:1245-1264
    • (2003) J Mach Learn Res , vol.3 , pp. 1245-1264
    • Caruana, R.1    de Sa, V.R.2
  • 63
    • 35748932917 scopus 로고    scopus 로고
    • A review of feature selection techniques in bioinformatics
    • 17720704
    • Saeys Y Inza I Larranaga P A review of feature selection techniques in bioinformatics Bioinformatics 2007, 23:2507-2517 17720704
    • (2007) Bioinformatics , vol.23 , pp. 2507-2517
    • Saeys, Y.1    Inza, I.2    Larranaga, P.3
  • 64
    • 33745561205 scopus 로고    scopus 로고
    • An introduction to variable and feature selection
    • Guyon I Elisseeff A An introduction to variable and feature selection J Mach Learn Res 2003, 3:1157-1182
    • (2003) J Mach Learn Res , vol.3 , pp. 1157-1182
    • Guyon, I.1    Elisseeff, A.2
  • 65
    • 0242410408 scopus 로고    scopus 로고
    • Benchmarking attribute selection techniques for discrete class data mining
    • Hall MA Holmes B Benchmarking attribute selection techniques for discrete class data mining IEEE Trans Knowl Data Eng 2003, 15:1-16
    • (2003) IEEE Trans Knowl Data Eng , vol.15 , pp. 1-16
    • Hall, M.A.1    Holmes, B.2
  • 68
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Netherlands: Springer Schapire RE
    • Breiman L Random forests Machine Learning Netherlands: Springer Schapire RE 2001, 5-32
    • (2001) Machine Learning , pp. 5-32
    • Breiman, L.1
  • 70
  • 71
    • 0033931867 scopus 로고    scopus 로고
    • Assessing the accuracy of prediction algorithms for classification: An overview
    • 10871264
    • Baldi P Brunak S Chauvin Y Andersen CAF Nielsen H Assessing the accuracy of prediction algorithms for classification: An overview Bioinformatics 2000, 16:412-424 10871264
    • (2000) Bioinformatics , vol.16 , pp. 412-424
    • Baldi, P.1    Brunak, S.2    Chauvin, Y.3    Andersen, C.A.F.4    Nielsen, H.5
  • 72
    • 0016772212 scopus 로고
    • Comparison of the predicted and observed secondary structure of T4 phage lysozyme
    • 1180967
    • Matthews BW Comparison of the predicted and observed secondary structure of T4 phage lysozyme Biochim Biophys Acta 1975, 405:442-451 1180967
    • (1975) Biochim Biophys Acta , vol.405 , pp. 442-451
    • Matthews, B.W.1
  • 74
    • 14644390912 scopus 로고    scopus 로고
    • Using AUC and accuracy in evaluating learning algorithms
    • Huang J Ling CX Using AUC and accuracy in evaluating learning algorithms IEEE Trans Knowl Data Eng 2005, 17:299-310
    • (2005) IEEE Trans Knowl Data Eng , vol.17 , pp. 299-310
    • Huang, J.1    Ling, C.X.2
  • 75
    • 0003562954 scopus 로고    scopus 로고
    • A simple generalisation of the area under the roc curve for multiple class classification problems
    • Netherlands: Kluwer Academic Publishers Aha DW
    • Hand DJ Till RJ A simple generalisation of the area under the roc curve for multiple class classification problems Machine Learning Netherlands: Kluwer Academic Publishers Aha DW 2001, 171-186
    • (2001) Machine Learning , pp. 171-186
    • Hand, D.J.1    Till, R.J.2
  • 76
    • 33744815655 scopus 로고    scopus 로고
    • Proteins of the same fold and unrelated sequences have similar amino acid composition
    • 16565950
    • Ofran Y Margalit H Proteins of the same fold and unrelated sequences have similar amino acid composition Proteins 2006, 64:275-279 16565950
    • (2006) Proteins , vol.64 , pp. 275-279
    • Ofran, Y.1    Margalit, H.2
  • 77
    • 23144461988 scopus 로고    scopus 로고
    • LOCSVMPSI: A web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST
    • 1160120 15980436
    • Xie D Li A Wang M Fan Z Feng H LOCSVMPSI: A web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST Nucleic Acids Res 2005, 33:W105-110 1160120 15980436
    • (2005) Nucleic Acids Res , vol.33
    • Xie, D.1    Li, A.2    Wang, M.3    Fan, Z.4    Feng, H.5
  • 79
    • 33646169012 scopus 로고    scopus 로고
    • Identification of functionally important negatively charged residues in the carboxy end of mouse hepatitis coronavirus A59 nucleocapsid protein
    • 1472032 16611893
    • Verma S Bednar V Blount A Hogue BG Identification of functionally important negatively charged residues in the carboxy end of mouse hepatitis coronavirus A59 nucleocapsid protein J Virol 2006, 80:4344-4355 1472032 16611893
    • (2006) J Virol , vol.80 , pp. 4344-4355
    • Verma, S.1    Bednar, V.2    Blount, A.3    Hogue, B.G.4
  • 80
    • 0026529067 scopus 로고
    • Different positively charged amino acids have similar effects on the topology of a polytopic transmembrane protein in Escherichia coli
    • 1346135
    • Andersson H Bakker E Heijne G Different positively charged amino acids have similar effects on the topology of a polytopic transmembrane protein in Escherichia coli J Biol Chem 1992, 267:1491-1495 1346135
    • (1992) J Biol Chem , vol.267 , pp. 1491-1495
    • Andersson, H.1    Bakker, E.2    Heijne, G.3
  • 81
    • 0033584852 scopus 로고    scopus 로고
    • A single negatively charged residue affects the orientation of a membrane protein in the inner membrane of Escherichia coli only when it is located adjacent to a transmembrane domain
    • 10559268
    • Rutz C Rosenthal W Schulein R A single negatively charged residue affects the orientation of a membrane protein in the inner membrane of Escherichia coli only when it is located adjacent to a transmembrane domain J Biol Chem 1999, 274:33757-33763 10559268
    • (1999) J Biol Chem , vol.274 , pp. 33757-33763
    • Rutz, C.1    Rosenthal, W.2    Schulein, R.3
  • 82
    • 0023479265 scopus 로고
    • Determinants of membrane protein topology
    • 299577 3317413
    • Boyd D Manoil C Beckwith J Determinants of membrane protein topology Proc Natl Acad Sci USA 1987, 84:8525-8529 299577 3317413
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 8525-8529
    • Boyd, D.1    Manoil, C.2    Beckwith, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.