메뉴 건너뛰기




Volumn 21, Issue SUPPL. 1, 2005, Pages

Protein function prediction via graph kernels

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; COMPUTER ANALYSIS; CONTROLLED STUDY; INFORMATION PROCESSING; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FUNCTION; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; STRUCTURE ANALYSIS;

EID: 33745771638     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti1007     Document Type: Article
Times cited : (1076)

References (38)
  • 3
    • 0037263940 scopus 로고    scopus 로고
    • Inferring protein function from structure
    • Bourne,P.E. and Welssig,H. (eds), Wiley-Liss, Inc., New York
    • Bartlett,G.J., Todd,A.E. and Thornton,J.M. (2003) Inferring protein function from structure. In Bourne,P.E. and Welssig,H. (eds), Structural Bioinformatics. Wiley-Liss, Inc., New York, pp. 387-407.
    • (2003) Structural Bioinformatics , pp. 387-407
    • Bartlett, G.J.1    Todd, A.E.2    Thornton, J.M.3
  • 5
    • 0041989751 scopus 로고    scopus 로고
    • Castp: Computed atlas of surface topography of proteins
    • Binkowski,T.A., Naghibzadeh,S. and Liang,J. (2003) Castp: Computed atlas of surface topography of proteins. Nucleic Acids Res., 31, 3352-3355.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3352-3355
    • Binkowski, T.A.1    Naghibzadeh, S.2    Liang, J.3
  • 7
    • 1442275650 scopus 로고    scopus 로고
    • Enzyme family classification by support vector machines
    • Cai,C.Z., Han,L.Y., Ji,Z.L. and Chen,Y.Z. (2004) Enzyme family classification by support vector machines. Proteins, 55, 66-76.
    • (2004) Proteins , vol.55 , pp. 66-76
    • Cai, C.Z.1    Han, L.Y.2    Ji, Z.L.3    Chen, Y.Z.4
  • 8
    • 0041736652 scopus 로고    scopus 로고
    • Protein function classification via support vector machine approach
    • Cai,C.Z., Wang,W.L., Sun,L.Z. and Chen,Y.Z. (2003) Protein function classification via support vector machine approach. Math. Biosci., 185, 111-122.
    • (2003) Math. Biosci. , vol.185 , pp. 111-122
    • Cai, C.Z.1    Wang, W.L.2    Sun, L.Z.3    Chen, Y.Z.4
  • 9
    • 0020371598 scopus 로고
    • The structural dependence of amino acid hydrophobicity parameters
    • Charton,M. and Charton,B.I. (1982) The structural dependence of amino acid hydrophobicity parameters. J. Theor. Biol., 99, 629-644.
    • (1982) J. Theor. Biol. , vol.99 , pp. 629-644
    • Charton, M.1    Charton, B.I.2
  • 10
    • 0026636312 scopus 로고
    • Hydrophobicity and structural classes in proteins
    • Cid,H., Bunster,M., Canales,M. and Gazitua,F. (1992) Hydrophobicity and structural classes in proteins. Protein Eng., 5, 373-375.
    • (1992) Protein Eng. , vol.5 , pp. 373-375
    • Cid, H.1    Bunster, M.2    Canales, M.3    Gazitua, F.4
  • 12
    • 34249753618 scopus 로고
    • Support vector networks
    • Cortes,C. and Vapnik,V. (1995) Support vector networks.Machine Learning, 20, 273-297.
    • (1995) Machine Learning , vol.20 , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 13
    • 0041743078 scopus 로고    scopus 로고
    • Distinguishing enzyme structures from non-enzymes without alignments
    • Dobson,P.D. and Doig,A.J. (2003) Distinguishing enzyme structures from non-enzymes without alignments. J. Mol. Biol., 330, 771-783.
    • (2003) J. Mol. Biol. , vol.330 , pp. 771-783
    • Dobson, P.D.1    Doig, A.J.2
  • 14
  • 15
    • 0041494125 scopus 로고    scopus 로고
    • Efficient SVM training using lowrank kernel representations
    • Fine,S. and Scheinberg,K. (2001) Efficient SVM training using lowrank kernel representations. J. Mach. Learn. Res., 2, 243-264.
    • (2001) J. Mach. Learn. Res. , vol.2 , pp. 243-264
    • Fine, S.1    Scheinberg, K.2
  • 17
    • 0016197604 scopus 로고
    • Amino acid difference formula to help explain protein evolution
    • Grantham,R. (1974) Amino acid difference formula to help explain protein evolution. Science, 185, 862-864.
    • (1974) Science , vol.185 , pp. 862-864
    • Grantham, R.1
  • 19
    • 0008267184 scopus 로고    scopus 로고
    • Convolutional kernels on discrete structures
    • Technical Report UCSC-CRL-99-10, Computer Science Department, University of California, Santa Cruz CA
    • Haussler,D. (1999) Convolutional kernels on discrete structures. Technical Report UCSC-CRL-99-10, Computer Science Department, University of California, Santa Cruz CA.
    • (1999)
    • Haussler, D.1
  • 20
    • 0033597176 scopus 로고    scopus 로고
    • The relationship between protein structure and function: A comprehensive survey with application to the yeast genome
    • Hegyi,H. and Gerstein,M. (1999) The relationship between protein structure and function: A comprehensive survey with application to the yeast genome. J. Mol. Biol., 288, 147-164.
    • (1999) J. Mol. Biol. , vol.288 , pp. 147-164
    • Hegyi, H.1    Gerstein, M.2
  • 21
    • 0029785147 scopus 로고    scopus 로고
    • Mapping the protein universe
    • Holm,L. and Sander,C. (1996) Mapping the protein universe. Science, 273, 595-602.
    • (1996) Science , vol.273 , pp. 595-602
    • Holm, L.1    Sander, C.2
  • 22
    • 1942516986 scopus 로고    scopus 로고
    • Marginalized kernels between labeled graphs
    • Washington, DC
    • Kashima,H., Tsuda,K. and Inokuchi,A. (2003) Marginalized kernels between labeled graphs. Proceedings of ICML, Washington, DC, pp. 321-328.
    • (2003) Proceedings of ICML , pp. 321-328
    • Kashima, H.1    Tsuda, K.2    Inokuchi, A.3
  • 24
    • 0041775676 scopus 로고    scopus 로고
    • Diffusion kernels on graphs and other discrete structures
    • Sydney, Australia
    • Kondor,R.S. and Lafferty,J. (2002) Diffusion kernels on graphs and other discrete structures. Proceedings of ICML, Sydney, Australia, pp. 322-325.
    • (2002) Proceedings of ICML , pp. 322-325
    • Kondor, R.S.1    Lafferty, J.2
  • 27
    • 1942452307 scopus 로고    scopus 로고
    • Machine learning with hyperkernels
    • Washington, DC
    • Ong,C.S. and Smola,A.J. (2003) Machine learning with hyperkernels. Proceedings of ICML, Washington, DC, pp. 568-575.
    • (2003) Proceedings of ICML , pp. 568-575
    • Ong, C.S.1    Smola, A.J.2
  • 34
    • 0037197254 scopus 로고    scopus 로고
    • A novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature
    • Tsodikov,O.V., Record,M.T.Jr. and Sergeev,Y.V. (2002) A novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature. J. Comput. Chem., 23, 600-609.
    • (2002) J. Comput. Chem. , vol.23 , pp. 600-609
    • Tsodikov, O.V.1    Record Jr., M.T.2    Sergeev, Y.V.3
  • 35
    • 0346799108 scopus 로고    scopus 로고
    • Prediction of protein function from protein sequence and structure
    • Whisstock,J.C. and Lesk,A.M. (2003) Prediction of protein function from protein sequence and structure. Q. Rev. Biophys., 36, 307-340.
    • (2003) Q. Rev. Biophys. , vol.36 , pp. 307-340
    • Whisstock, J.C.1    Lesk, A.M.2
  • 37
    • 0036088133 scopus 로고    scopus 로고
    • Dip, the database of interacting proteins: A research tool for studying cellualr networks of protein interactions
    • Xenarios,I., Salwinski,L., Duan,X., Higney,P., Kim,S.M. and Eisenberg,D. (2002) Dip, the database of interacting proteins: A research tool for studying cellualr networks of protein interactions. Nucleic Acids Res., 30, 303-305.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 303-305
    • Xenarios, I.1    Salwinski, L.2    Duan, X.3    Higney, P.4    Kim, S.M.5    Eisenberg, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.