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Volumn 3, Issue , 2009, Pages

A systematic design method for robust synthetic biology to satisfy design specifications

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; GENE REGULATORY NETWORK; GENETIC TRANSCRIPTION; METHODOLOGY; SYSTEMS BIOLOGY;

EID: 69549091790     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-3-66     Document Type: Article
Times cited : (29)

References (49)
  • 1
    • 33746199797 scopus 로고    scopus 로고
    • The promise and perils of synthetic biology
    • 16832953
    • Tucker JB Zilinskas RA The promise and perils of synthetic biology New Atlantis 2006, 12:25-45 16832953
    • (2006) New Atlantis , vol.12 , pp. 25-45
    • Tucker, J.B.1    Zilinskas, R.A.2
  • 2
    • 33745454125 scopus 로고    scopus 로고
    • Synthetic biology: New engineering rules for an emerging discipline
    • 1681505 16738572
    • Andrianantoandro E Basu S Karig DK Weiss R Synthetic biology: New engineering rules for an emerging discipline Mol Syst Biol 2006, 2:2006.0028 1681505 16738572
    • (2006) Mol Syst Biol , vol.2
    • Andrianantoandro, E.1    Basu, S.2    Karig, D.K.3    Weiss, R.4
  • 3
    • 28544451327 scopus 로고    scopus 로고
    • Foundations for engineering biology
    • 16306983
    • Endy D Foundations for engineering biology Nature 2005, 438(7067):449-453 16306983
    • (2005) Nature , vol.438 , Issue.7067 , pp. 449-453
    • Endy, D.1
  • 4
    • 0037079012 scopus 로고    scopus 로고
    • Engineered gene circuits
    • 12432407
    • Hasty J McMillen D Collins JJ Engineered gene circuits Nature 2002, 420(6912):224-230 12432407
    • (2002) Nature , vol.420 , Issue.6912 , pp. 224-230
    • Hasty, J.1    McMillen, D.2    Collins, J.J.3
  • 6
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • 10659857
    • Gardner TS Cantor CR Collins JJ Construction of a genetic toggle switch in Escherichia coli Nature 2000, 403(6767):339-342 10659857
    • (2000) Nature , vol.403 , Issue.6767 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 7
    • 34548747486 scopus 로고    scopus 로고
    • Robustness analysis and tuning of synthetic gene networks
    • 17660209
    • Batt G Yordanov B Weiss R Belta C Robustness analysis and tuning of synthetic gene networks Bioinformatics 2007, 23(18):2415 17660209
    • (2007) Bioinformatics , vol.23 , Issue.18 , pp. 2415
    • Batt, G.1    Yordanov, B.2    Weiss, R.3    Belta, C.4
  • 8
    • 1842558252 scopus 로고    scopus 로고
    • Robust control in bacterial regulatory circuits
    • 15063859
    • Goulian M Robust control in bacterial regulatory circuits Current Opinion in Microbiology 2004, 7(2):198-202 15063859
    • (2004) Current Opinion in Microbiology , vol.7 , Issue.2 , pp. 198-202
    • Goulian, M.1
  • 9
    • 7644238181 scopus 로고    scopus 로고
    • Biological robustness
    • 15520792
    • Kitano H Biological robustness Nature Reviews Genetics 2004, 5(11):826-837 15520792
    • (2004) Nature Reviews Genetics , vol.5 , Issue.11 , pp. 826-837
    • Kitano, H.1
  • 10
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: A literature review
    • 11911796
    • de Jong H Modeling and simulation of genetic regulatory systems: A literature review Journal of Computational Biology 2002, 9(1):67-103 11911796
    • (2002) Journal of Computational Biology , vol.9 , Issue.1 , pp. 67-103
    • de Jong, H.1
  • 12
    • 33847134821 scopus 로고    scopus 로고
    • Efficient classification of complete parameter regions based on semidefinite programming
    • 1800867 17224043
    • Kuepfer L Sauer U Parrilo P Efficient classification of complete parameter regions based on semidefinite programming BMC Bioinformatics 2007, 8(1):12 1800867 17224043
    • (2007) BMC Bioinformatics , vol.8 , Issue.1 , pp. 12
    • Kuepfer, L.1    Sauer, U.2    Parrilo, P.3
  • 14
    • 52249111600 scopus 로고    scopus 로고
    • Robust engineered circuit design principles for stochastic biochemical networks with parameter uncertainties and disturbances
    • Chen BS Chen PW Robust engineered circuit design principles for stochastic biochemical networks with parameter uncertainties and disturbances Biomedical Circuits and Systems, IEEE Transactions on 2008, 2(2):114-132
    • (2008) Biomedical Circuits and Systems, IEEE Transactions on , vol.2 , Issue.2 , pp. 114-132
    • Chen, B.S.1    Chen, P.W.2
  • 15
    • 67649887149 scopus 로고    scopus 로고
    • Robust synthetic biology design: Stochastic game theory approach
    • 2705229 19435742
    • Chen BS Chang CH Lee HC Robust synthetic biology design: Stochastic game theory approach Bioinformatics 2009, 25(14):1822-1830 2705229 19435742
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1822-1830
    • Chen, B.S.1    Chang, C.H.2    Lee, H.C.3
  • 16
    • 0033083733 scopus 로고    scopus 로고
    • It's a noisy business! Genetic regulation at the nanomolar scale
    • 10098409
    • McAdams HH Arkin A It's a noisy business! Genetic regulation at the nanomolar scale Trends Genet 1999, 15(2):65-69 10098409
    • (1999) Trends Genet , vol.15 , Issue.2 , pp. 65-69
    • McAdams, H.H.1    Arkin, A.2
  • 17
    • 0031879114 scopus 로고    scopus 로고
    • Stochastic kinetic analysis of developmental pathway bifurcation in phage ë-infected Escherichia coli cells
    • 1460268 9691025
    • Arkin A Ross J McAdams HH Stochastic kinetic analysis of developmental pathway bifurcation in phage ë-infected Escherichia coli cells Genetics 1998, 149(4):1633-1648 1460268 9691025
    • (1998) Genetics , vol.149 , Issue.4 , pp. 1633-1648
    • Arkin, A.1    Ross, J.2    McAdams, H.H.3
  • 18
    • 33645831442 scopus 로고    scopus 로고
    • State feedback H∞ control for a class of nonlinear stochastic systems
    • Zhang W Chen BS State feedback H∞ control for a class of nonlinear stochastic systems SIAM journal on control and optimization 2006, 44(6):1973-1991
    • (2006) SIAM Journal on Control and Optimization , vol.44 , Issue.6 , pp. 1973-1991
    • Zhang, W.1    Chen, B.S.2
  • 23
    • 33645813418 scopus 로고    scopus 로고
    • On the attenuation and amplification of molecular noise in genetic regulatory networks
    • 1435772 16457708
    • Chen BS Wang YC On the attenuation and amplification of molecular noise in genetic regulatory networks BMC Bioinformatics 2006, 7(1):52 1435772 16457708
    • (2006) BMC Bioinformatics , vol.7 , Issue.1 , pp. 52
    • Chen, B.S.1    Wang, Y.C.2
  • 27
    • 0742269301 scopus 로고    scopus 로고
    • Stochastic H-2/H-infinity control with state-dependent noise
    • Chen BS Zhang W Stochastic H-2/H-infinity control with state-dependent noise IEEE Transactions on Automatic Control 2004, 49(1):45-57
    • (2004) IEEE Transactions on Automatic Control , vol.49 , Issue.1 , pp. 45-57
    • Chen, B.S.1    Zhang, W.2
  • 28
    • 39849084368 scopus 로고    scopus 로고
    • The switching threshold reconstruction problem for piecewise affine models of genetic regulatory networks
    • Drulhe S Ferrari-Trecate G de Jong H The switching threshold reconstruction problem for piecewise affine models of genetic regulatory networks IEEE Automatic Control 2008, 53:153-165
    • (2008) IEEE Automatic Control , vol.53 , pp. 153-165
    • Drulhe, S.1    Ferrari-Trecate, G.2    de Jong, H.3
  • 30
    • 0035487293 scopus 로고    scopus 로고
    • Recombineering: A powerful new tool for mouse functional genomics
    • 11584293
    • Copeland NG Jenkins NA Court DL Recombineering: A powerful new tool for mouse functional genomics Nat Rev Genet 2001, 2:769-779 11584293
    • (2001) Nat Rev Genet , vol.2 , pp. 769-779
    • Copeland, N.G.1    Jenkins, N.A.2    Court, D.L.3
  • 31
    • 0036953835 scopus 로고    scopus 로고
    • Genetic engineering using homologous recombination
    • 12429697
    • Court DL Sawitzke JA Thomason LC Genetic engineering using homologous recombination Annu Rev Genet 2002, 36:361-388 12429697
    • (2002) Annu Rev Genet , vol.36 , pp. 361-388
    • Court, D.L.1    Sawitzke, J.A.2    Thomason, L.C.3
  • 32
    • 0033790503 scopus 로고    scopus 로고
    • Mechanisms and control of mRNA decapping in Saccharomyces cerevisiae
    • 10966469
    • Tucker M Parker R Mechanisms and control of mRNA decapping in Saccharomyces cerevisiae Annu Rev Biochem 2000, 69:571-595 10966469
    • (2000) Annu Rev Biochem , vol.69 , pp. 571-595
    • Tucker, M.1    Parker, R.2
  • 33
    • 0036276986 scopus 로고    scopus 로고
    • Analyzing mRNA decay in Saccharomyces cerevisiae
    • 12073375
    • Steiger MA Parker R Analyzing mRNA decay in Saccharomyces cerevisiae Methods Enzymol 2002, 351:648-660 12073375
    • (2002) Methods Enzymol , vol.351 , pp. 648-660
    • Steiger, M.A.1    Parker, R.2
  • 34
    • 0034518317 scopus 로고    scopus 로고
    • Directed evolution of metabolically engineered Escherichia coli for carotenoid production
    • 11101317
    • Wang C Oh MK Liao JC Directed evolution of metabolically engineered Escherichia coli for carotenoid production Biotechnology Progress 2000, 16(6):922-926 11101317
    • (2000) Biotechnology Progress , vol.16 , Issue.6 , pp. 922-926
    • Wang, C.1    Oh, M.K.2    Liao, J.C.3
  • 35
    • 1442306167 scopus 로고    scopus 로고
    • Design of artificial cell-cell communication using gene and metabolic networks
    • 356945 14983004
    • Bulter T Lee S Wong W Fung E Connor M Liao J Design of artificial cell-cell communication using gene and metabolic networks Proc Natl Acad Sci U S A 2004, 101(8):2299-2304 356945 14983004
    • (2004) Proc Natl Acad Sci U S A , vol.101 , Issue.8 , pp. 2299-2304
    • Bulter, T.1    Lee, S.2    Wong, W.3    Fung, E.4    Connor, M.5    Liao, J.6
  • 36
    • 0034024497 scopus 로고    scopus 로고
    • Improving lycopene production in Escherichia coli by engineering metabolic control
    • 10802621
    • Farmer WR Liao JC Improving lycopene production in Escherichia coli by engineering metabolic control Nature Biotechnology 2000, 18:533-537 10802621
    • (2000) Nature Biotechnology , vol.18 , pp. 533-537
    • Farmer, W.R.1    Liao, J.C.2
  • 37
    • 0034212551 scopus 로고    scopus 로고
    • Engineering stability in gene networks by autoregulation
    • 10850721
    • Becskei A Serrano L Engineering stability in gene networks by autoregulation Nature 2000, 405(6786):590-593 10850721
    • (2000) Nature , vol.405 , Issue.6786 , pp. 590-593
    • Becskei, A.1    Serrano, L.2
  • 39
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • 10659856
    • Elowitz MB Leibler S A synthetic oscillatory network of transcriptional regulators Nature 2000 403(6767):335-338 10659856
    • (2000) Nature , vol.403 , Issue.6767 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 40
    • 1542380403 scopus 로고    scopus 로고
    • The evolution of genetic regulatory systems in bacteria
    • 14970819
    • McAdams HH Srinivasan B Arkin AP The evolution of genetic regulatory systems in bacteria Nature Reviews Genetics 2004, 5(3):169-178 14970819
    • (2004) Nature Reviews Genetics , vol.5 , Issue.3 , pp. 169-178
    • McAdams, H.H.1    Srinivasan, B.2    Arkin, A.P.3
  • 41
    • 33746603530 scopus 로고    scopus 로고
    • Programming and engineering biological networks
    • 16842994
    • Chin JW Programming and engineering biological networks Current Opinion in Structural Biology 2006, 16(4):551-556 16842994
    • (2006) Current Opinion in Structural Biology , vol.16 , Issue.4 , pp. 551-556
    • Chin, J.W.1
  • 42
    • 0037366966 scopus 로고    scopus 로고
    • Design principles and operating principles: The yin and yang of optimal functioning
    • 12547041
    • Voit EO Design principles and operating principles: The yin and yang of optimal functioning Mathematical Biosciences 2003, 182(1):81-92 12547041
    • (2003) Mathematical Biosciences , vol.182 , Issue.1 , pp. 81-92
    • Voit, E.O.1
  • 43
    • 0015231849 scopus 로고
    • Parameter sensitivity as a criterion for evaluating and comparing the performance of biochemical systems
    • 4925348
    • Savageau MA Parameter sensitivity as a criterion for evaluating and comparing the performance of biochemical systems Nature 1971, 229(5286):542-544 4925348
    • (1971) Nature , vol.229 , Issue.5286 , pp. 542-544
    • Savageau, M.A.1
  • 45
    • 0035578429 scopus 로고    scopus 로고
    • Design principles for elementary gene circuits: Elements, methods, and examples
    • 12779449
    • Savageau MA Design principles for elementary gene circuits: Elements, methods, and examples Chaos 2001, 11(1):142-159 12779449
    • (2001) Chaos , vol.11 , Issue.1 , pp. 142-159
    • Savageau, M.A.1
  • 46
    • 0036500993 scopus 로고    scopus 로고
    • Systems biology: A brief overview
    • 11872829
    • Kitano H Systems biology: A brief overview Science 2002, 295(5560):1662-1664 11872829
    • (2002) Science , vol.295 , Issue.5560 , pp. 1662-1664
    • Kitano, H.1
  • 47
    • 0642281331 scopus 로고    scopus 로고
    • Quantifying robustness of biochemical network models
    • 65048 11818024
    • Ma L Iglesias P Quantifying robustness of biochemical network models BMC Bioinformatics 2002, 3(38):1-13 65048 11818024
    • (2002) BMC Bioinformatics , vol.3 , Issue.38 , pp. 1-13
    • Ma, L.1    Iglesias, P.2
  • 49
    • 10444264607 scopus 로고    scopus 로고
    • Some new directions in control theory inspired by systems biology
    • 17052111
    • Sontag ED Some new directions in control theory inspired by systems biology Syst Biol (Stevenage) 2004, 1(1):9-18 17052111
    • (2004) Syst Biol (Stevenage) , vol.1 , Issue.1 , pp. 9-18
    • Sontag, E.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.