Chemometric analysis of multiple species of Bacillus bacterial endospores using infrared spectroscopy: Discrimination to the strain level

Analytica Chimica Acta

Volumn 651, Issue 1, 2009, Pages 24-30

  Forrester, Joel B ^a   Valentine, Nancy B ^a   Su, Yin Fong ^a   Johnson, Timothy J ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

Bacillus; Chemometrics; Discrimination; Endospores; FTIR; Infrared spectroscopy

Indexed keywords

BACILLUS; CHEMOMETRICS; DISCRIMINATION; ENDOSPORES; FTIR;

FOURIER TRANSFORM INFRARED SPECTROSCOPY; GLUCOSE; LAW ENFORCEMENT; PRINCIPAL COMPONENT ANALYSIS; SPECTROSCOPIC ANALYSIS; SPECTROSCOPY; SPECTRUM ANALYSIS;

BACTERIOLOGY;

ARTICLE; BACILLUS; BACILLUS CEREUS; BACILLUS MEGATERIUM; BACILLUS SUBTILIS; BACILLUS THURINGIENSIS; BACTERIAL ENDOSPORE; BACTERIAL STRAIN; BACTERIUM DETECTION; CHEMOMETRIC ANALYSIS; CLASSIFICATION; CONTROLLED STUDY; INFRARED SPECTROSCOPY; NONHUMAN; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; STRAIN IDENTIFICATION;

BACILLUS; BACTERIAL TYPING TECHNIQUES; PRINCIPAL COMPONENT ANALYSIS; SPECTROPHOTOMETRY, INFRARED; SPORES, BACTERIAL;

BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS);

EID: 69449106252     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2009.08.005     Document Type: Article

References (49)

1. Johnson T.J., Su Y.-F., Valentine N.B., Kreuzer-Martin H.W., Wahl K.L., and Williams S.D. The Infrared Spectra of Bacillus Bacteria - Part I: vegetative Bacillus vs. sporulated cells and the contributions of phospholipids to vegetative IR spectra. Appl. Spectrosc. 63 (2009) 104-112
2. 2O. Appl. Spectrosc. 63 (2009) 113-120
3. Iqbal S.S., Mayo M.W., Bruno J.G., Bronk B.V., Batt C.A., and Chambers J.P. A review of molecular recognition technologies for detection of biological threat agents. Biosens. Bioelectron. 15 (2000) 549-578
4. Vanderberg L.A. Detection of biological agents: looking for bugs in all the wrong places. Appl. Spectrosc. 54 (2000) 376A-385A
5. Greenfield R.A., Drevets D.A., Machado L.J., Voskuhl G.W., Cornea P., and Bronze M.S. Bacterial pathogens as biological weapons and agents of bioterrorism. Am. J. Med. Sci. 323 (2002) 299-315
6. Pearman W.F., and Fountain III A.W. Classification of chemical and biological warfare agent simulants by surface-enhanced raman spectroscopy and multivariate statistical techniques. Appl. Spectrosc. 60 (2006) 356-365
7. Samuels A.C., Snyder A.P., Emge D.K., Amant D.St., Minter J., Campbell M., and Tripathi A. Classification of select category A and B bacteria by Fourier transform infrared spectroscopy. Appl. Spectrosc. 63 (2009) 14-24
8. Moayeri M., and Leppla S.H. The roles of anthrax toxin in pathogenesis. Curr. Opin. Microbiol. 7 (2004) 19-24
9. Guidi-Rontani C., Weber-Levy M., Labruyère E., and Mock M. Germination of Bacillus anthracis spores within alveolar macrophages. Mol. Microbiol. 31 1 (1999) 9-17
10. Wunschel S.C., Jarman K.H., Petersen C.E., Valentine N.B., Wahl K.L., Schauki D., Jackman J., Nelson C.P., and White V.E. Bacterial analysis by MALDI-TOF mass spectrometry: an inter-laboratory comparison. J. Am. Soc. Mass Spectrom. 16 (2005) 456-462
11. Filip Z., Herrmann S., and Kubat J. FT-IR spectroscopic characteristics of differently cultivated Bacillus subtilis. Microbiol. Res. 159 3 (2004) 257-262
12. Naumann D., Helm D., and Labischinski H. Microbiological characterizations by FT-IR spectroscopy. Nature 351 6321 (1991) 81-82
13. Naumann D., Keller S., Helm D., Schultz C.P., and Schrader B. FT-IR spectroscopy and FT-Raman spectroscopy are powerful analytical tools for the noninvasive characterization of intact microbial cells. J. Mol. Struct. 347 (1995) 399-405
14. Naumann D. Infrared spectroscopy in microbiology. In: Meyers R.A. (Ed). Encyclopedia of Analytical Chemistry (2000), John Wiley & Sons, New York
15. Goodacre R., Timmins E.M., Rooney P.J., Rowland J.J., and Kell D.B. Rapid identification of Streptococcus and Enterococcus species using diffuse reflectance-absorbance Fourier transform infrared spectroscopy and artificial neural networks. FEMS Microbiol. Lett. 140 2-3 (1996) 233-239
16. Goodacre R., Shann B., Gilbert R.J., Timmins E.A., McGovern A.C., Alsberg B.K., Kell D.B., and Logan N.A. Detection of the dipicolinic acid biomarker in Bacillus spores using Curie-point pyrolysis mass spectrometry & FT-IR spectroscopy. Anal. Chem. 72 (2000) 119-127
17. Perkins D.L., Lovell C.R., Bronk B.V., Setlow B., Setlow P., and Myrick M.L. Effects of autoclaving on bacterial endospores studied by Fourier transform infrared microspectroscopy. Appl. Spectrosc. 58 6 (2004) 749-753
18. Perkins D.L., Lovell C.R., Bronk B.V., Setlow B., Setlow P., and Myrick M.L. Fourier transform infrared reflectance microspectroscopy study of Bacillus subtilis engineered without dipicolinic acid: the contribution of calcium dipicolinate to the mid-infrared absorbance of Bacillus subtilis endospores. Appl. Spectrosc. 59 7 (2005) 893-896
19. Thompson S.E., Foster N.S., Johnson T.J., Valentine N.B., and Amonette J.E. Identification of bacterial spores using statistical analysis of Fourier transform infrared photoacoustic spectroscopy data. Appl. Spectrosc. 57 (2003) 893-899
20. Foster N.S., Thompson S.E., Valentine N.B., Amonette J.E., and Johnson T.J. Identification of sporulated and vegetative bacteria using statistical analysis of Fourier transform mid-infrared transmission data. Appl. Spectrosc. 58 (2004) 203-211
21. Baldauf N.A., Rodriguez-Romo L.A., Yousef A.E., and Rodriguez-Saona L.E. Differentiation of selected Salmonella enterica serovars by Fourier transform mid-infrared spectroscopy. Appl. Spectrosc. 60 6 (2006) 592-598
22. Irudayaraj J., Yang H., and Sakhamuri S. Differentiation and detection of microorganisms using Fourier transform infrared photoacoustic spectroscopy. J. Mol. Struct. 606 (2002) 181-188
23. Rebuffo-Scheer C.A., Kirschner C., Staemmler M., and Naumann D. Rapid species and strain differentiation of non-tubercoulous mycobacteria by Fourier-transform infrared microspectroscopy. J. Microbiol. Methods 68 2 (2007) 282-290
24. Li H., and Tripp C.P. Detection of Bacillus globigii spores using a Fourier transform infrared-attenuated total reflection method. Appl. Spectrosc. 62 9 (2008) 963-967
25. Wahl K.L., Wunschel S.C., Jarman K.H., Valentine N.B., Petersen C.E., Kingsley M.T., Zartolas K.A., and Saenz A.J. Analysis of microbial mixtures by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Anal. Chem. 74 24 (2002) 6191-6199
26. Johnson T.J., Valentine N.B., and Sharpe S.W. Mid-infrared versus far-infrared (THz) relative intensities of room-temperature Bacillus spores. Chem. Phys. Lett. 403 (2005) 152-157
27. Naumann D., Schultz C.P., and Helm D. What can infrared spectroscopy tell us about the structure and composition of intact bacterial cells. In: Mantsch H.H., and Chapman D. (Eds). Infrared Spectroscopy of Biomolecules (1996), Wiley, New York 279-310
28. Helm D., Labischinski H., and Naumann D. Elaboration of a procedure for identification of bacteria using Fourier-transform infrared spectral libraries: a stepwise correlation approach. J. Microbiol. Methods 14 (1991) 127-142
29. Johnson T.J., Sams R.L., Blake T.A., and Sharpe S.W. Removing aperture-induced artifacts from FT-IR intensity values. Appl. Opt. 41 (2002) 2831-2839
30. Sharpe S.W., Johnson T.J., Sams R.L., Chu P.M., Rhoderick G.C., and Johnson P.A. Gas-phase databases for quantitative Infrared Spectroscopy. Appl. Spectrosc. 58 (2004) 1452-1461
31. 2: implications for its atmospheric fate. J. Phys. Chem. A 107 (2003) 6183-6190
32. Schiza M.V., Perkins D.L., Priore R.J., Setlow B., Setlow P., Bronk B.V., Wong D.M., and Myrick M.L. Improved dispersion of bacterial endospores for quantitative infrared sampling on gold coated porous alumina membranes. Appl. Spectrosc. 59 (2005) 1068-1074
33. Rencher A.C. Methods of Multivariate Analysis. second Ed. (2002), Wiley-Interscience, Danvers, Massachusetts
34. Bligh E.G., and Dyer W.J. A rapid method of total lipid extraction and purification. Can. J. Biochem. Physiol. 37 (1959) 911-917
35. Macnaughton S.J., Jenkins T.L., Wimpee M.H., Cormiér M.R., and White D.C. Rapid extraction of lipid biomarkers from pure culture and environmental samples using pressurized accelerated hot solvent extraction. J. Microbiol. Methods 31 (1997) 19-27
36. Bertsch L.L., Bonsen P.P.M., and Kornberg A. Biochemical studies of bacterial sporulation and germination XIV. Phospholipids in Bacillus megaterium. J. Bacteriol. 98 (1969) 75-81
37. Lang D.R., and Lundgren D.G. Lipid composition of Bacillus cereus during growth and sporulation. J. Bacteriol. 101 2 (1970) 483-489
38. Scandella C., and Kornberg A. Biochemical studies of bacterial sporulation and germination XV. Fatty acids in growth, sporulation, and germination of Bacillus megaterium. J. Bacteriol. 98 1 (1969) 82-86
39. Kalivas J.H., and Gemperline P.J. Calibration. In: Gemperline P. (Ed). Practical Guide to Chemometrics. second ed. (2006), CRC Press, Boca Raton, Florida
40. Nishikida K., Nishio E., and Hannah R.W. Selected Applications of Modern FT-IR Techniques (1995), Kodansha Ltd, Tokyo
41. D.L., C.R. Lovell, B.V. Bronk, B. Setlow, P. Setlow, M.L. Myrick, Classification of endospores of Bacillus and Clostridium species by FT-IR reflectance microscpectroscopy and autoclaving, IEEE International Workshop on Measurement Systems for Homeland Security, Contraband Detection and Personal Safety, Orlando, Florida, 29-30 March 2005.
42. Helm D., and Naumann D. Identification of some bacterial cell components by FT-IR spectroscopy. FEMS Microbiol. Lett. 126 (1995) 75-80
43. T.J. Johnson, S.D. Williams, N.B Valentine, Y.-F. Su, Vib. Spectrosc., submitted August 2009.
44. Goodacre R., Shann B., Gilbert R.J., Timmins E.A., McGovern A.C., Alsberg B.K., Kell D.B., and Logan N.A. Detection of the dipicolinic acid biomarker in Bacillus spores using Curie-point pyrolysis mass spectrometry and FT-IR spectroscopy. Anal. Chem. 72 (2000) 119-127
45. Socrates G. Infrared characteristic group frequencies: Tables and Charts, second sub ed. (1994), Wiley-Interscience, Chichester, New York
46. Johnson T.J., Hipps K.W., and Willett R.D. Salts of the l,l,2,3,3-Pentacyanopropenide anion: crystallographic and spectroscopic studies. J. Phys. Chem. 92 (1988) 6892-6899
47. Beattie S.H., Holt C., Hirst D., and Williams A.G. Discrimination among Bacillus cereus, B. mycoides, and B. thuringiensis and some other species of the genus Bacillus by Fourier transform infrared spectroscopy. FEMS Microbiol. Lett. 164 (1998) 201-206
48. Young K.B., and Cote J.C. A single phylogenetic analysis of Bacillus thuringiensis strains and Bacilli species inferred from 16S rRNA gene restriction fragment length polymorphism is congruent with two independent phylogenetic analyses. J. Appl. Microbiol. 93 (2002) 1075-1082
49. van der Mei H.C., Naumann D., and Busscher H.J. Grouping of Streptococcus mitis strains grown on different growth media by FT-IR. Infrared Phys. Technol. 37 (1996) 561-564