Planobacterium taklimakanense gen. nov., sp. nov., a member of the family Flavobacteriaceae that exhibits swimming motility, isolated from desert soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 7, 2009, Pages 1672-1678

  Peng, Fang ^a   Liu, Ming ^a   Zhang, Lei ^a   Dai, Jun ^a   Luo, Xueshong ^a   An, Hongli ^a   Fang, Chengxiang ^a  

^a WUHAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMOXICILLIN; AZITHROMYCIN; CEFALEXIN; CEFAZOLIN; CEFIXIME; CEFOTAXIME; CEFOXITIN; CEFRADINE; CEFTIZOXIME; CEFTRIAXONE; FARNOQUINONE; FATTY ACID; FLEXIRUBIN; FURAZOLIDONE; GENTAMICIN; IMIPENEM; LINCOMYCIN; NEOMYCIN; NITROFURANTOIN; NOVOBIOCIN; OFLOXACIN; PIGMENT; RIFAMPICIN; RNA 16S; SODIUM CHLORIDE; SPECTINOMYCIN; STREPTOMYCIN; TETRACYCLINE; UNCLASSIFIED DRUG; UNINDEXED DRUG; VANCOMYCIN; BACTERIAL DNA;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CELL MOTILITY; CHINA; CHRYSEOBACTERIUM; CLOACIBACTERIUM; CONTROLLED STUDY; DESERT; DNA CONTENT; ELIZABETHKINGIA; FLAVOBACTERIACEAE; GRAM NEGATIVE BACTERIUM; LIQUID CULTURE; MICROBIAL MORPHOLOGY; MOLECULAR PHYLOGENY; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PLANOBACTERIUM TAKLIMAKANENSE; PRIORITY JOURNAL; RIEMERELLA COLUMBINA; RNA SEQUENCE; SEJONGIA; SEQUENCE ANALYSIS; SOIL MICROFLORA; STRAIN DIFFERENCE; TYPE STRAIN; CLASSIFICATION; DESERT CLIMATE; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; MOVEMENT (PHYSIOLOGY); PHYLOGENY; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); CHRYSEOBACTERIUM; ELIZABETHKINGIA; FLAVOBACTERIACEAE; NEGIBACTERIA; RIEMERELLA COLUMBINA; SEJONGIA;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DESERT CLIMATE; DNA, BACTERIAL; FATTY ACIDS; FLAVOBACTERIACEAE; GENES, RRNA; MOLECULAR SEQUENCE DATA; MOVEMENT; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

EID: 69449086562     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.006619-0     Document Type: Article

References (38)

1. Allen, T. D., Lawson, P. A., Collins, M. D., Falsen, E. & Tanner, R. S. (2006). Cloacibacterium normanense gen. nov., sp. nov., a novel bacterium from the family Flavobacteriaceae isolated from municipal wastewater. Int J Syst Evol Microbiol 56, 1311-1316.
2. Bae, S. S., Kwon, K. K., Yang, S. H., Lee, H.-S., Kim, S.-J. & Lee, J.-H. (2007). Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome. Int J Syst Evol Microbiol 57, 1050-1054.
3. Bernardet, J.-F. & Nakagawa, Y. (2006). An introduction to the family Flavobacteriaceae. In The Prokaryotes: A Handbook on the Biology of Bacteria, 3rd edn, vol. 7, pp. 455-480. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
4. Bernardet, J.-F., Segers, P., Vancanneyt, M., Berthe, F., Kersters, K. & Vandamme, P. (1996). Cutting a Gordian knot: Emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46, 128-148.
5. Bernardet, J.-F., Nakagawa, Y. & Holmes, B. (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
6. Bernardet, J.-F., Hugo, C. & Bruun, B. (2006). The genera Chryseobacterium and Elizabethkingia. In The Prokaryotes: A Handbook on the Biology of Bacteria, 3rd edn, vol. 7, pp. 638-676. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
7. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861- 1868.
8. Bruns, A., Rohde, M. & Berthe-Corti, L. (2001). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997-2006.
9. Buck, J. D. (1982). Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl Environ Microbiol 44, 992- 993.
10. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: A web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261.
11. Gallego, V., Garcia, M. T. & Ventosa, A. (2006). Chryseobacterium hispanicum sp. nov., isolated from the drinking water distribution system of Sevilla, Spain. Int J Syst Evol Microbiol 56, 1589-1592.
12. Gosink, J. J., Woese, C. R. & Staley, J. T. (1998). Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of 'Flectobacillus glomeratus' as Polaribacter glomeratus comb. nov. Int J Syst Bacteriol 48, 223-235.
13. Hantsis-Zacharov, E. & Halpern, M. (2007). Chryseobacterium haifense sp. nov., a psychrotolerant bacterium isolated from raw milk. Int J Syst Evol Microbiol 57, 2344-2348.
14. Herzog, P., Winkler, I., Wolking, D., Kämpfer, P. & Lipski, A. (2008). Chryseobacterium ureilyticum sp. nov., Chryseobacterium gambrini sp. nov., Chryseobacterium pallidum sp. nov. and Chryseobacterium molle sp. nov., isolated from beer-bottling plants. Int J Syst Evol Microbiol 58, 26-33.
15. Holmes, B., Owen, R. J., Steigerwalt, A. G. & Brenner, D. J. (1984). Flavobacterium gleum, a new species found in human clinical specimens. Int J Syst Bacteriol 34, 21-25.
16. Hugo, C. J., Segers, P., Hoste, B., Vancanneyt, M. & Kersters, K. (2003). Chryseobacterium joostei sp. nov., isolated from the dairy environment. Int J Syst Evol Microbiol 53, 771-777.
17. Kämpfer, P., Dreyer, U., Neef, A., Dott, W. & Busse, H.-J. (2003). Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53, 93-97.
18. Kim, M. K., Im, W.-T., Shin, Y. K., Lim, J. H., Kim, S.-H., Lee, B. C., Park, M.-Y., Lee, K. Y. & Lee, S.-T. (2004). Kaistella koreensis gen. nov., sp. nov., a novel member of the Chryseobacterium-Bergeyella-Riemerella branch. Int J Syst Evol Microbiol 54, 2319-2324.
19. Kim, K. K., Kim, M. K., Lim, J. H., Park, H. Y. & Lee, S. T. (2005). Transfer of Chryseobacterium meningosepticum and Chryseobacterium miricola to Elizabethkingia gen. nov. as Elizabethkingia meningoseptica comb. nov. and Elizabethkingia miricola comb. nov. Int J Syst Evol Microbiol 55, 1287-1293.
20. Kim, K. K., Lee, K. C., Oh, H.-M. & Lee, J.-S. (2008). Chryseobacterium aquaticum sp. nov., isolated from a water reservoir. Int J Syst Evol Microbiol 58, 533-537.
21. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA 3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
22. Lee,K., Lee, H. K.,Choi, T.-H.&Cho, J.-C. (2007). Sejongia marina sp. nov., isolated from Antarctic seawater. Int J Syst Evol Microbiol 57, 2917-2921.
23. Lin, Y.-C., Uemori, K., de Briel, D. A., Arunpairojana, V. & Yokota, A. (2004). Zimmermannella helvola gen. nov. sp. nov., Zimmermannella alba sp. nov., Zimmermannella bifida sp. nov., Zimmermannella faecalis sp. nov. and Leucobacter albus sp. nov., novel members of the family Microbacteriaceae. Int J Syst Evol Microbiol 54, 1669-1676.
24. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
25. NCCLS (2003). Performance standards for antimicrobial disk susceptibility tests, 8th edn. Approved Standard, M2-A8. Wayne, PA: National Committee for Clinical Laboratory Standards.
26. O'Sullivan, L. A., Rinna, J., Humphreys, G., Weightman, A. J. & Fry, J. C. (2006). Culturable phylogenetic diversity of the phylum ' Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae: Epilithonimonas tenax gen. nov., sp. nov. and Persicivirga xylanidelens gen. nov., sp. nov. Int J Syst Evol Microbiol 56, 169-180.
27. Park, M. S., Jung, S. R., Lee, K. H., Lee, M.-S., Do, J. O., Kim, S. B. & Bae, K. S. (2006). Chryseobacterium soldanellicola sp. nov. and Chryseobacterium taeanense sp. nov., isolated from roots of sand-dune plants. Int J Syst Evol Microbiol 56, 433-438.
28. Park, S. C., Kim, M. S., Baik, K. S., Kim, E. M., Rhee, M. S. & Seong, C. N. (2008). Chryseobacterium aquifrigidense sp. nov., isolated from a water-cooling system. Int J Syst Evol Microbiol 58, 607-611.
29. Quan, Z.-X., Kim, K. K., Kim, M. K., Jin, L. & Lee, S.-T. (2007). Chryseobacterium caeni sp. nov., isolated from bioreactor sludge. Int J Syst Evol Microbiol 57, 141-145.
30. Skerman, V. B. D. (1967). A Guide to the Identification of the Genera of Bacteria, 2nd edn. Baltimore: Williams & Wilkins.
31. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Woods & N. R. Krieg. Washington, DC: American Society for Microbiology.
32. Tai, C.-J., Kuo, H.-P., Lee, F.-L., Che, H.-K., Yokota, A. & Lo, C.-C. (2006). Chryseobacterium taiwanense sp. nov., isolated from soil in Taiwan. Int J Syst Evol Microbiol 56, 1771-1776.
33. Vancanneyt, M., Vandamme, P., Segers, P., Torck, U., Coopman, R., Kersters, K. & Hinz, K.-H. (1999). Riemerella columbina sp. nov., a bacterium associated with respiratory disease in pigeons. Int J Syst Bacteriol 49, 289-295.
34. Vandamme, P., Bernardet, J.-F., Segers, P., Kersters, K. & Holmes, B. (1994). New perspectives in the classification of the Flavobacteria: Description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 44, 827-831.
35. Xie, C. H. & Yokota, A. (2003). Phylogenetic analysis of Lampropedia hyalina based on the 16S rRNA gene sequence. J Gen Appl Microbiol 49, 345-349.
36. Yi, H., Yoon, H. I. & Chun, J. (2005). Sejongia antarctica gen. nov., sp. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic. Int J Syst Evol Microbiol 55, 409-416.
37. Yoon, J. H., Lee, M. H., Oh, T. K. & Park, Y. H. (2005). Muricauda flavescens sp. nov. and Muricauda aquimarina sp. nov., isolated from a salt lake near Hwajinpo Beach of the East Sea in Korea, and emended description of the genus Muricauda. Int J Syst Evol Microbiol 55, 1015-1019.
38. Yoon, J.-H., Kang, S.-J., Jung, Y.-T. & Oh, T.-K. (2008). Muricauda lutimaris sp. nov., isolated from a tidal flat of the Yellow Sea. Int J Syst Evol Microbiol 58, 1603-1607.