Cell contact-dependent acquisition of cellular and viral nonautonomously encoded small RNAs

Genes and Development

Volumn 23, Issue 16, 2009, Pages 1971-1979

  Rechavi, Oded ^a   Erlich, Yaniv ^b   Amram, Hila ^a,c   Flomenblit, Lena ^a,c   Karginov, Fedor V ^b   Goldstein, Itamar ^a,c   Hannon, Gregory J ^b   Kloog, Yoel ^a  

^a TEL AVIV UNIVERSITY   (Israel)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^c SHEBA MEDICAL CENTER   (Israel)

Author keywords

Immunity; Intercellular transfer; microRNA; shRNA

Indexed keywords

MICRORNA; VIRUS RNA;

ARTICLE; B LYMPHOCYTE; CELL COMMUNICATION; CELL CONTACT; CONTROLLED STUDY; GENE EXPRESSION; GENE TARGETING; HUMAN; HUMAN CELL; IMMUNE RESPONSE; IMMUNOCOMPETENT CELL; PRIORITY JOURNAL; RNA TRANSPORT; SIGNAL TRANSDUCTION; T LYMPHOCYTE; CELL CULTURE; GENE EXPRESSION REGULATION; LEUKEMIA CELL LINE; METABOLISM;

MAMMALIA;

B-LYMPHOCYTES; CELL COMMUNICATION; CELLS, CULTURED; GENE EXPRESSION REGULATION; HUMANS; JURKAT CELLS; MICRORNAS; RNA, VIRAL; T-LYMPHOCYTES;

EID: 69249245325     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.1789609     Document Type: Article

References (30)

1. Bartel DP. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
2. Bopp T, Becker C, Klein M, Klein-Hessling S, Palmetshofer A, Serfling E, Heib V, Becker M, Kubach J, Schmitt S, et al. 2007. Cyclic adenosine monophosphate is a key component of regulatory T cell-mediated suppression. J Exp Med 204: 1303 1310. (Pubitemid 46919868)
3. Borchert GM, Lanier W, Davidson BL. 2006. RNA polymerase III transcribes human microRNAs. Nat Struct Mol Biol 13: 1097-1101. (Pubitemid 44885920)
4. Bromley SK, Burack WR, Johnson KG, Somersalo K, Sims TN, Sumen C, Davis MM, Shaw AS, Allen PM, Dustin ML. 2001. The immunological synapse. Annu Rev Immunol 19: 375-396.
5. Cai X, Schafer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR. 2006. Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed. PLoS Pathog 2: e23. doi: 10.1371/journal.ppat. 0020023.
6. Carrington JC. 2000. RNA silencing. Moving targets. Nature 408: 150-151.
7. Chang K, Elledge SJ, Hannon GJ. 2006. Lessons from nature: MicroRNA-based shRNA libraries. Nat Methods 3: 707-714. (Pubitemid 44275738)
8. Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR, et al. 2005. Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 33: e179. doi: 10.1093/nar/gni178. (Pubitemid 41806407)
9. Davis DM. 2007. Intercellular transfer of cell-surface proteins is common and can affect many stages of an immune response. Nat Rev Immunol 7: 238-243.
10. Dinger ME, Mercer TR, Mattick JS. 2008. RNAs as extracellular signaling molecules. J Mol Endocrinol 40: 151-159.
11. Dykxhoorn DM, Novina CD, Sharp PA. 2003. Killing the messenger: Short RNAs that silence gene expression. Nat Rev Mol Cell Biol 4: 457-467.
12. Feinberg EH, Hunter CP. 2003. Transport of dsRNA into cells by the transmembrane protein SID-1. Science 301: 1545-1547. (Pubitemid 37128548)
13. Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ. 2008. miRBase: Tools for microRNA genomics. Nucleic Acids Res 36: D154-D158. doi: 10.1093/nar/gkm952.
14. He L, Hannon GJ. 2004. MicroRNAs: Small RNAs with a big role in gene regulation. Nat Rev Genet 5: 522-531. (Pubitemid 38868508)
15. Hofmann C, Sambade A, Heinlein M. 2007. Plasmodesmata and intercellular transport of viral RNA. Biochem Soc Trans 35: 142-145. (Pubitemid 46271829)
16. Ibarra I, Erlich Y, Muthuswamy SK, Sachidanandam R, Hannon GJ. 2007. A role for microRNAs in maintenance of mouse mammary epithelial progenitor cells. Genes & Dev 21: 3238-3243. (Pubitemid 350277751)
17. Joly E, Hudrisier D. 2003. What is trogocytosis and what is its purpose? Nat Immunol 4: 815.
18. Kent WJ. 2002. BLAT - The BLAST-like alignment tool. Genome Res 12: 656-664.
19. Lowe TM, Eddy SR. 1997. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964.
20. Meister G, Tuschl T. 2004. Mechanisms of gene silencing by double-stranded RNA. Nature 431: 343-349. (Pubitemid 39265674)
21. Mello CC, Conte D Jr. 2004. Revealing the world of RNA interference. Nature 431: 338-342.
22. Paddison PJ, Caudy AA, Sachidanandam R, Hannon GJ. 2004. Short hairpin activated gene silencing in mammalian cells. Methods Mol Biol 265: 85-100.
23. Rechavi O, Goldstein I, Vernitsky H, Rotblat B, Kloog Y. 2007. Intercellular transfer of oncogenic H-Ras at the immunological synapse. PLoS One 2: e1204. doi: 10.1371/journal.pone.0001204. (Pubitemid 351638151)
24. Saleh MC, Tassetto M, van Rij RP, Goic B, Gausson V, Berry B, Jacquier C, Antoniewski C, Andino R. 2009. Antiviral immunity in Drosophila requires systemic RNA interference spread. Nature 458: 346-350.
25. Selbach M, Schwanhausser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N. 2008. Widespread changes in protein synthesis induced by microRNAs. Nature 455: 58-63.
26. Skog, J., Wurdinger, T., van Rijn, S., Meijer, D.H., Gainche, L., Curry, W.T., Carter, B.S., Krichevsky, A.M., and Breakefield, X.O. 2008. Glioblastoma microvesicles transport RNA and proteins that promote tumour growth and provide diagnostic biomarkers. Nat Cell Biol 10: 1470-1476.
27. Tijsterman M, Ketting RF, Plasterk RH. 2002. The genetics of RNA silencing. Annu Rev Genet 36: 489-519.
28. Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO. 2007. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol 9: 654-659. (Pubitemid 47214727)
29. Valencia-Sanchez MA, Liu J, Hannon GJ, Parker R. 2006. Control of translation and mRNA degradation by miRNAs and siRNAs. Genes & Dev 20: 515-524. (Pubitemid 43345317)
30. Wu H, Neilson JR, Kumar P, Manocha M, Shankar P, Sharp PA, Manjunath N. 2007. miRNA profiling of naive, effector and memory CD8 T cells. PLoS One 2: e1020. doi: 10.1371/journal.pone.0001020. (Pubitemid 351560146)