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Volumn 282, Issue 3, 2009, Pages 273-281

Mapping SNP-anchored genes using high-resolution melting analysis in almond

Author keywords

Almond; HRM; Mapping; Protein similarity; SNP

Indexed keywords

PROTEIN; VEGETABLE PROTEIN;

EID: 69249230972     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-009-0464-4     Document Type: Article
Times cited : (41)

References (50)
  • 2
    • 41049102508 scopus 로고    scopus 로고
    • Advances in molecular marker techniques and their applications in plant sciences
    • M Agarwal N Shrivastava H Padh 2008 Advances in molecular marker techniques and their applications in plant sciences Plant Cell Rep 27 617 631
    • (2008) Plant Cell Rep , vol.27 , pp. 617-631
    • Agarwal, M.1    Shrivastava, N.2    Padh, H.3
  • 3
    • 44049086018 scopus 로고    scopus 로고
    • Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation
    • D Bielenberg Y Wang Z Li T Zhebentyayeva S Fan G Reighard R Scorza A Abbott 2008 Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation Tree Genet Genomes 4 495 507
    • (2008) Tree Genet Genomes , vol.4 , pp. 495-507
    • Bielenberg, D.1    Wang, Y.2    Li, Z.3    Zhebentyayeva, T.4    Fan, S.5    Reighard, G.6    Scorza, R.7    Abbott, A.8
  • 6
    • 0033934105 scopus 로고    scopus 로고
    • A newly identified barley gene, Dhn12, encoding a YSK2 DHN, is located on chromosome 6H and has embryo-specific expression
    • DW Choi TJ Close 2000 A newly identified barley gene, Dhn12, encoding a YSK2 DHN, is located on chromosome 6H and has embryo-specific expression Theor Appl Genet 100 1274 1278
    • (2000) Theor Appl Genet , vol.100 , pp. 1274-1278
    • Choi, D.W.1    Close, T.J.2
  • 7
    • 54049154729 scopus 로고    scopus 로고
    • High-resolution melt analysis to identify and map sequence-tagged site anchor points onto linkage maps: A white lupin (Lupinus albus) map as an exemplar
    • AE Croxford T Rogers PD Caligari MJ Wilkinson 2008 High-resolution melt analysis to identify and map sequence-tagged site anchor points onto linkage maps: a white lupin (Lupinus albus) map as an exemplar New Phytol 180 594 607
    • (2008) New Phytol , vol.180 , pp. 594-607
    • Croxford, A.E.1    Rogers, T.2    Caligari, P.D.3    Wilkinson, M.J.4
  • 9
    • 0031773382 scopus 로고    scopus 로고
    • Genetic linkage map of peach [Prunus persica (L.) Batsch] using morphological and molecular markers
    • E Dirlewanger V Pronier C Parvery C Rothan A Guye R Monet 1998 Genetic linkage map of peach [Prunus persica (L.) Batsch] using morphological and molecular markers Theor Appl Genet 97 888 895
    • (1998) Theor Appl Genet , vol.97 , pp. 888-895
    • Dirlewanger, E.1    Pronier, V.2    Parvery, C.3    Rothan, C.4    Guye, A.5    Monet, R.6
  • 13
    • 35848964045 scopus 로고    scopus 로고
    • Champuru 1.0: A computer software for unraveling mixtures of two DNA sequences of unequal lengths
    • JF Flot 2007 Champuru 1.0: a computer software for unraveling mixtures of two DNA sequences of unequal lengths Mol Ecol Notes 7 974 977
    • (2007) Mol Ecol Notes , vol.7 , pp. 974-977
    • Flot, J.F.1
  • 14
    • 33747401249 scopus 로고    scopus 로고
    • Phase determination from direct sequencing of length-variable DNA regions
    • JF Flot A Tillier S Samadi S Tillier 2006 Phase determination from direct sequencing of length-variable DNA regions Mol Ecol Notes 6 627 630
    • (2006) Mol Ecol Notes , vol.6 , pp. 627-630
    • Flot, J.F.1    Tillier, A.2    Samadi, S.3    Tillier, S.4
  • 16
    • 0029140739 scopus 로고
    • Molecular characterization of cDNAs corresponding to genes expressed during almond (Prunus amygdalus Batsch) seed development
    • J Garcia-Mas R Messeguer P Arús P Puigdomenech 1995 Molecular characterization of cDNAs corresponding to genes expressed during almond (Prunus amygdalus Batsch) seed development Plant Mol Biol 27 205 210
    • (1995) Plant Mol Biol , vol.27 , pp. 205-210
    • Garcia-Mas, J.1    Messeguer, R.2    Arús, P.3    Puigdomenech, P.4
  • 17
    • 69249245114 scopus 로고    scopus 로고
    • An integrated genetic linkage map for almond based on RAPD, ISSR, SSR and morphological markers
    • D Gregory M Sedgley MG Wirthensohn P Arús B Kaiser GG Collins 2005 An integrated genetic linkage map for almond based on RAPD, ISSR, SSR and morphological markers Acta Hortic 694 67 72
    • (2005) Acta Hortic , vol.694 , pp. 67-72
    • Gregory, D.1    Sedgley, M.2    Wirthensohn, M.G.3    Arús, P.4    Kaiser, B.5    Collins, G.G.6
  • 18
    • 34547175751 scopus 로고    scopus 로고
    • Expression of MdCAS1 and MdCAS2, encoding apple β-cyanoalanine synthase homologs, is concomitantly induced during ripening and implicates MdCASs in the possible role of the cyanide detoxification in Fuji apple (Malus domestica Borkh.) fruits
    • S Han Y Seo D Kim S-K Sung W Kim 2007 Expression of MdCAS1 and MdCAS2, encoding apple β-cyanoalanine synthase homologs, is concomitantly induced during ripening and implicates MdCASs in the possible role of the cyanide detoxification in Fuji apple (Malus domestica Borkh.) fruits Plant Cell Rep 26 1321 1331
    • (2007) Plant Cell Rep , vol.26 , pp. 1321-1331
    • Han, S.1    Seo, Y.2    Kim, D.3    Sung, S.-K.4    Kim, W.5
  • 19
    • 2442557312 scopus 로고    scopus 로고
    • Development of PCR-based SNP markers for rice blast resistance genes at the Piz locus
    • K Hayashi N Hashimoto M Daigen I Ashikawa 2004 Development of PCR-based SNP markers for rice blast resistance genes at the Piz locus Theor Appl Genet 108 1212 1220
    • (2004) Theor Appl Genet , vol.108 , pp. 1212-1220
    • Hayashi, K.1    Hashimoto, N.2    Daigen, M.3    Ashikawa, I.4
  • 20
    • 23244451433 scopus 로고    scopus 로고
    • Isolation and expression of protein disulfide isomerase cDNA from sweet potato (Ipomoea batatas [L.] Lam 'Tainong 57') storage roots
    • D-J Huang H-J Chen Y-H Lin 2005 Isolation and expression of protein disulfide isomerase cDNA from sweet potato (Ipomoea batatas [L.] Lam 'Tainong 57') storage roots Plant Sci 169 776 784
    • (2005) Plant Sci , vol.169 , pp. 776-784
    • Huang, D.-J.1    Chen, H.-J.2    Lin, Y.-H.3
  • 22
    • 0033843974 scopus 로고    scopus 로고
    • Development of a second-generation linkage map for almond using RAPD and SSR markers
    • T Joobeur N Periam MC Vicente GJ King P Arús 2000 Development of a second-generation linkage map for almond using RAPD and SSR markers Genome 43 649 655
    • (2000) Genome , vol.43 , pp. 649-655
    • Joobeur, T.1    Periam, N.2    Vicente, M.C.3    King, G.J.4    Arús, P.5
  • 24
    • 0031159313 scopus 로고    scopus 로고
    • Accumulation of 19-kDa plasma membrane polypeptide during induction of freezing tolerance in wheat suspension-cultured cells by abscisic acid
    • M Koike D Takezawa K Arakawa S Yoshida 1997 Accumulation of 19-kDa plasma membrane polypeptide during induction of freezing tolerance in wheat suspension-cultured cells by abscisic acid Plant Cell Physiol 38 707 716
    • (1997) Plant Cell Physiol , vol.38 , pp. 707-716
    • Koike, M.1    Takezawa, D.2    Arakawa, K.3    Yoshida, S.4
  • 25
    • 0027232818 scopus 로고
    • Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development
    • H Kouchi S Hata 1993 Isolation and characterization of novel nodulin cDNAs representing genes expressed at early stages of soybean nodule development Mol Gen Genet 238 106 119
    • (1993) Mol Gen Genet , vol.238 , pp. 106-119
    • Kouchi, H.1    Hata, S.2
  • 27
    • 0031939078 scopus 로고    scopus 로고
    • Using simple sequence repeats (SSRs) for DNA fingerprinting germplasm accessions of grape (Vitis L.) species
    • WF Lamboy CG Alpha 1998 Using simple sequence repeats (SSRs) for DNA fingerprinting germplasm accessions of grape (Vitis L.) species J Am Soc Hortic Sci 123 182 188
    • (1998) J Am Soc Hortic Sci , vol.123 , pp. 182-188
    • Lamboy, W.F.1    Alpha, C.G.2
  • 28
    • 36448988254 scopus 로고    scopus 로고
    • Predicting protein function from sequence and structure
    • D Lee O Redfern C Orengo 2007 Predicting protein function from sequence and structure Nat Rev Mol Cell Biol 8 995 1005
    • (2007) Nat Rev Mol Cell Biol , vol.8 , pp. 995-1005
    • Lee, D.1    Redfern, O.2    Orengo, C.3
  • 29
    • 50249161491 scopus 로고    scopus 로고
    • The use of high-resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley
    • A Lehmensiek MW Sutherland RB McNamara 2008 The use of high-resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley Theor Appl Genet 117 721 728
    • (2008) Theor Appl Genet , vol.117 , pp. 721-728
    • Lehmensiek, A.1    Sutherland, M.W.2    McNamara, R.B.3
  • 30
    • 3042651880 scopus 로고    scopus 로고
    • Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons
    • M Liew R Pryor R Palais C Meadows M Erali E Lyon C Wittwer 2004 Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons Clin Chem 50 1156 1164
    • (2004) Clin Chem , vol.50 , pp. 1156-1164
    • Liew, M.1    Pryor, R.2    Palais, R.3    Meadows, C.4    Erali, M.5    Lyon, E.6    Wittwer, C.7
  • 31
    • 28444461439 scopus 로고    scopus 로고
    • MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis
    • M Luo ES Dennis F Berger WJ Peacock A Chaudhury 2005 MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis Proc Natl Acad Sci USA 102 17531 17536
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 17531-17536
    • Luo, M.1    Dennis, E.S.2    Berger, F.3    Peacock, W.J.4    Chaudhury, A.5
  • 32
    • 0034807334 scopus 로고    scopus 로고
    • β-Cyanoalanine synthase and cysteine synthase from potato: Molecular cloning, biochemical characterization, and spatial and hormonal regulation
    • A Maruyama K Saito K Ishizawa 2001 β-Cyanoalanine synthase and cysteine synthase from potato: molecular cloning, biochemical characterization, and spatial and hormonal regulation Plant Mol Biol 46 749 760
    • (2001) Plant Mol Biol , vol.46 , pp. 749-760
    • Maruyama, A.1    Saito, K.2    Ishizawa, K.3
  • 33
    • 2942626251 scopus 로고    scopus 로고
    • Text mining of DNA sequence homology searches
    • J McCallum S Ganesh 2003 Text mining of DNA sequence homology searches Appl Bioinformatics 2 S59 S63
    • (2003) Appl Bioinformatics , vol.2
    • McCallum, J.1    Ganesh, S.2
  • 34
    • 69249241505 scopus 로고    scopus 로고
    • DgPDI (Accession No. AF131223), a full-length cDNA from symbiotic root nodules of Datisca glomerata with homology to protein disulfide isomerase genes
    • PA Okubara AM Berry 1999 DgPDI (Accession No. AF131223), a full-length cDNA from symbiotic root nodules of Datisca glomerata with homology to protein disulfide isomerase genes Plant Physiol 119 1568
    • (1999) Plant Physiol , vol.119 , pp. 1568
    • Okubara, P.A.1    Berry, A.M.2
  • 35
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • RDM Page 1996 TreeView: an application to display phylogenetic trees on personal computers Comput Appl Biosci 12 357 358
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 36
    • 0030924358 scopus 로고    scopus 로고
    • Up-regulation of two cDNA clones encoding metallothionein-like proteins in apple fruit during cool storage
    • SJ Reid GS Ross 1997 Up-regulation of two cDNA clones encoding metallothionein-like proteins in apple fruit during cool storage Physiol Plant 100 183 189
    • (1997) Physiol Plant , vol.100 , pp. 183-189
    • Reid, S.J.1    Ross, G.S.2
  • 37
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • S Rozen H Skaletsky 2000 Primer3 on the WWW for general users and for biologist programmers Methods Mol Biol 132 365 386
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 38
    • 17444424980 scopus 로고    scopus 로고
    • Looking into flowering time in almond (Prunus dulcis (Mill) D. A. Webb): The candidate gene approach
    • C Silva J Garcia-Mas AM Sanchez P Arús M Oliveira 2005 Looking into flowering time in almond (Prunus dulcis (Mill) D. A. Webb): the candidate gene approach Theor Appl Genet 110 959 968
    • (2005) Theor Appl Genet , vol.110 , pp. 959-968
    • Silva, C.1    Garcia-Mas, J.2    Sanchez, A.M.3    Arús, P.4    Oliveira, M.5
  • 39
    • 25844515725 scopus 로고    scopus 로고
    • Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein
    • S Singh CC Cornilescu RC Tyler G Cornilescu M Tonelli MS Lee JL Markley 2005 Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein Protein Sci 14 2601 2609
    • (2005) Protein Sci , vol.14 , pp. 2601-2609
    • Singh, S.1    Cornilescu, C.C.2    Tyler, R.C.3    Cornilescu, G.4    Tonelli, M.5    Lee, M.S.6    Markley, J.L.7
  • 40
    • 0033604619 scopus 로고    scopus 로고
    • Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology
    • PS Soltis DE Soltis MW Chase 1999 Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology Nature 402 402 404
    • (1999) Nature , vol.402 , pp. 402-404
    • Soltis, P.S.1    Soltis, D.E.2    Chase, M.W.3
  • 41
    • 0024399053 scopus 로고
    • Characterization of two genes encoding small heat-shock proteins in Arabidopsis thaliana
    • T Takahashi Y Komeda 1989 Characterization of two genes encoding small heat-shock proteins in Arabidopsis thaliana Mol Gen Genet 219 365 372
    • (1989) Mol Gen Genet , vol.219 , pp. 365-372
    • Takahashi, T.1    Komeda, Y.2
  • 43
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 46
    • 0029112270 scopus 로고
    • The molecular evolution of the small heat-shock proteins in plants
    • ER Waters 1995 The molecular evolution of the small heat-shock proteins in plants Genetics 141 785 795
    • (1995) Genetics , vol.141 , pp. 785-795
    • Waters, E.R.1
  • 48
    • 2942549269 scopus 로고    scopus 로고
    • LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles
    • M Wise 2003 LEAping to conclusions: a computational reanalysis of late embryogenesis abundant proteins and their possible roles BMC Bioinformatics 4 52
    • (2003) BMC Bioinformatics , vol.4 , pp. 52
    • Wise, M.1
  • 49
    • 1942424148 scopus 로고    scopus 로고
    • A molecular linkage map of olive (Olea europaea L) based on RAPD, microsatellite, and SCAR markers
    • SB Wu G Collins M Sedgley 2004 A molecular linkage map of olive (Olea europaea L) based on RAPD, microsatellite, and SCAR markers Genome 47 26 35
    • (2004) Genome , vol.47 , pp. 26-35
    • Wu, S.B.1    Collins, G.2    Sedgley, M.3


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