Identification of three wheat globulin genes by screening a triticum aestivum BAC genomic library with cDNA from a diabetes-associated globulin

BMC Plant Biology

Volumn 9, Issue , 2009, Pages

  Loit, Evelin ^a   Melnyk, Charles W ^a,c   MacFarlane, Amanda J ^a,b,d   Scott, Fraser W ^a,b   Altosaar, Illimar ^a  

^a UNIVERSITY OF OTTAWA   (Canada)

^b OTTAWA HOSPITAL RESEARCH INSTITUTE   (Canada)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^d Bureau of Nutritional Sciences   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

MUS; RATTUS; TRITICUM AESTIVUM;

COMPLEMENTARY DNA; GLOBULIN; PLANT DNA; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENE LIBRARY; GENETICS; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT GENE; PROMOTER REGION; SEQUENCE ALIGNMENT; WHEAT;

AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; DNA, COMPLEMENTARY; DNA, PLANT; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENOMIC LIBRARY; GLOBULINS; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; PROMOTER REGIONS, GENETIC; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TRITICUM;

EID: 69149109841     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-9-93     Document Type: Article

References (45)

1. A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium. BS Gill R Appels AM Botha-Oberholster CR Buell JL Bennetzen B Chalhoub F Chumley J Dvorak M Iwanaga B Keller, Genetics 2004 168 2 1087 1096 15514080 10.1534/genetics.104.034769 (Pubitemid 39491484)
2. Celiac-related properties of chemically and enzymatically modified gluten proteins. C Berti L Roncoroni ML Falini R Caramanico E Dolfini MT Bardella L Elli C Terrani F Forlani, J Agric Food Chem. 2007 55 6 2482 2488 10.1021/jf062623n 17311397 (Pubitemid 46556242)
3. Biomedicine - Gluten and the gut - Lessons for immune regulation. D Schuppan EG Hahn, Science 2002 297 5590 2218 2220 10.1126/science.1077572 12351776
4. Structural basis for gluten intolerance in Celiac sprue. L Shan O Molberg I Parrot F Hausch F Filiz GM Gray LM Sollid C Khosla, Science 2002 297 5590 2275 2279 10.1126/science.1074129 12351792
5. Characterized allergens causing bakers' asthma. X Baur A Posch, Allergy 1998 53 6 562 566 10.1111/j.1398-9995.1998.tb03931.x 9689337
6. Identification of wheat gliadins as an allergen family related to baker's asthma. C Bittner B Grassau K Frenzel X Baur, J Allergy Clin Immunol 2008 121 3 744 749 10.1016/j.jaci.2007.09.051 18036646 (Pubitemid 351323854)
7. Early infant feeding and risk of developing type 1 diabetes-associated autoantibodies. AG Ziegler S Schmid D Huber M Hummel E Bonifacio, JAMA 2003 290 13 1721 1728 10.1001/jama.290.13.1721 14519706 (Pubitemid 37430622)
8. Timing of initial cereal exposure in infancy and risk of islet autoimmunity. JM Norris K Barriga G Klingensmith M Hoffman GS Eisenbarth HA Erlich M Rewers, JAMA 2003 290 13 1713 1720 10.1001/jama.290.13.1713 14519705 (Pubitemid 37430621)
9. Dietary proteins as environmental modifiers of type 1 diabetes mellitus. DE Lefebvre KL Powell A Strom FW Scott, Annu Rev Nutr 2006 26 175 202 10.1146/annurev.nutr.26.061505.111206 16848704
10. In vitro-deranged intestinal immune response to gliadin in type 1 diabetes. R Auricchio F Paparo M Maglio A Franzese F Lombardi G Valerio G Nardone S Percopo L Greco R Troncone, Diabetes 2004 53 7 1680 1683 10.2337/diabetes.53.7.1680 15220190 (Pubitemid 38857024)
11. A type 1 diabetes-related protein from wheat (Triticum aestivum) - cDNA clone of a wheat storage globulin, Glb1, linked to islet damage. AJ MacFarlane KM Burghardt J Kelly T Simell O Simell I Altosaar FW Scott, Journal of Biological Chemistry 2003 278 1 54 63 10.1074/jbc.M210636200 12409286 (Pubitemid 36043543)
12. 7S globulins of cereal. AL Kriz, Seed Proteins Dordrecht, The Netherlands: Kluwer Academic Publishers, Shewry PR, Casey R, 1999 477 498
13. Barley embryo globulin-1 gene, beg1 - characterization of cDNA, chromosome mapping and regulation of expression. GR Heck AK Chamberlain THD Ho, Mol Gen Genet 1993 239 1-2 209 218 8510647
14. Characterization of Embryo Globulins Encoded by the Maize Glb Genes. AL Kriz, Biochemical Genetics 1989 27 3-4 239 251 10.1007/BF02401804 2775172
15. Molecular characterization of the major maize embryo globulin encoded by the glb1 gene. FC Belanger AL Kriz, Plant Physiol 1989 91 2 636 643 16667080 10.1104/pp.91.2.636
16. A family of endosperm globulins encoded by genes located in group 1 chromosomes of wheat and related species. L Gomez R Sanchezmonge G Salcedo, Mol Gen Genet 1988 214 3 541 546 10.1007/BF00330492
17. Purification and biochemical characterization of triticin, a legumin-like protein in wheat endosperm. NK Singh KW Shepherd P Langridge LC Gruen, J Cereal Sci 1991 13 3 207 219 10.1016/S0733-5210(09)80001-5
18. The wheat D-genome HMW-glutenin locus: BAC sequencing, gene distribution, and retrotransposon clusters. OD Anderson C Rausch O Moullet ES Lagudah, Funct Integr Genomics 2003 3 1-2 56 68 12590343
19. Recombinant Peanut Allergen Ara-H-I Expression and Ige Binding in Patients with Peanut Hypersensitivity. AW Burks G Cockrell JS Stanley RM Helm GA Bannon, J Clin Invest 1995 96 4 1715 1721 7560062 10.1172/JCI118216
20. Ana o 1, a cashew (Anacardium occidental) allergen of the vicilin seed storage protein family. F Wang JM Robotham SS Teuber P Tawde SK Sathe KH Roux, J Allergy Clin Immunol 2002 110 1 160 166 10.1067/mai.2002.125208 12110836 (Pubitemid 36132743)
21. Cloning of cDNA encoding a soybean allergen, Gly m Bd 28K. H Tsuji M Hiemori M Kimoto H Yamashita R Kobatake M Adachi T Fukuda N Bando M Okita S Utsumi, Biochim Biophys Acta 2001 1518 1-2 178 182 11267676
22. Cupins: the most functionally diverse protein superfamily? JM Dunwell A Purvis S Khuri, Phytochemistry 2004 65 1 7 17 10.1016/j.phytochem.2003.08.016 14697267 (Pubitemid 38155888)
23. Allergens of the cupin superfamily. EN Mills J Jenkins N Marigheto PS Belton AP Gunning VJ Morris, Biochem Soc Trans 2002 30 925 929 10.1042/BST0300925 12440948 (Pubitemid 36002382)
24. PlantProm: a database of plant promoter sequences. IA Shahmuradov AJ Gammerman JM Hancock PM Bramley VV Solovyev, Nucleic Acids Res 2003 31 1 114 117 12519961 10.1093/nar/gkg041 (Pubitemid 36150347)
25. Plant cis-acting regulatory DNA elements (PLACE) database: 1999. K Higo Y Ugawa M Iwamoto T Korenaga, Nucleic Acids Res 1999 27 1 297 300 9847208 10.1093/nar/27.1.297 (Pubitemid 29209466)
26. Conserved regulatory elements identified from a comparative puroindoline gene sequence survey of Triticum and Aegilops diploid taxa. MC Simeone KR Gedye R Mason-Gamer BS Gill CF Morris, J Cereal Sci 2006 44 1 21 33 10.1016/j.jcs.2006.02.002 (Pubitemid 43816230)
27. Genome evolution in polyploids. JF Wendel, Plant Mol Biol 2000 42 1 225 249 10688139 10.1023/A:1006392424384 (Pubitemid 30096119)
28. Characterization of vicilin during seed development in Vicia faba (L). DJ Wright D Boulter, Planta 1972 105 1 60 65 10.1007/BF00385164
29. Biochemistry of legume seed proteins. A Millerd, Annu Rev Plant Physiol Plant Molec Biol 1975 26 53 72 10.1146/annurev.pp.26.060175.000413
30. Regulation of gene-expression during plant embryogenesis. RB Goldberg SJ Barker L Perezgrau, Cell 1989 56 2 149 160 10.1016/0092-8674(89)90888-X 2643470
31. Gene expression during plant embryogenesis and germination - an overview. TL Thomas, Plant Cell 1993 5 10 1401 1410 8281041 10.1105/tpc.5.10.1401 (Pubitemid 2001883)
32. Functional dissection of a napin gene promoter: Identification of promoter elements required for embryo and endosperm-specific transcription. M Ellerstrom K Stalberg I Ezcurra L Rask, Plant Mol Biol 1996 32 6 1019 1027 10.1007/BF00041385 9002600
33. Quantitative nature of the Prolamin-box, ACGT and AACA motifs in a rice glutelin gene promoter: minimal cis-element requirements for endosperm-specific gene expression. CY Wu H Washida Y Onodera K Harada F Takaiwa, Plant J 2000 23 3 415 421 10.1046/j.1365-313x.2000.00797.x 10929134 (Pubitemid 30620848)
34. Abscisic acid-responsive sequences from the em gene of wheat. WR Marcotte SH Russell RS Quatrano, Plant Cell 1989 1 10 969 976 2562556 10.1105/tpc.1.10.969
35. Globulin gene expression in embryos of maize viviparous mutants - evidence for regulation of the glb1-gene by ABA. AR Kriz MS Wallace R Paiva, Plant Physiol 1990 92 2 538 542 16667311 10.1104/pp.92.2.538
36. Abscicic acid and the developmental regulation of embryo storage proteins in maize. CJ Rivin T Grudt, Plant Physiol 1991 95 2 358 365 16667991 10.1104/pp.95.2.358
37. Module-specific regulation of the beta-phaseolin promoter during embryogenesis. MB Chandrasekharan KJ Bishop TC Hall, Plant J 2003 33 5 853 866 10.1046/j.1365-313X.2003.01678.x 12609027 (Pubitemid 36339377)
38. Tissue-specific and temporal regulation of a beta-conglycinin gene - roles of the RY repeat and other cis-acting elements. T Fujiwara RN Beachy, Plant Mol Biol. 1994 24 2 261 272 10.1007/BF00020166 8111031
39. Detailed analysis of the expression of an alpha-gliadin promoter and the deposition of alpha-gliadin protein during wheat grain development. T Van Herpen M Riley C Sparks HD Jones C Gritsch EH Dekking RJ Hamer D Bosch EMJ Salentijn MJM Smulders, Ann Bot 2008 102 3 331 342 10.1093/aob/mcn114 18621967
40. The low-molecular-weight glutenin subunits of wheat gluten. R D'Ovidio S Masci, J Cereal Sci 2004 39 3 321 339 10.1016/j.jcs.2003.12.002 (Pubitemid 38836722)
41. A molecular marker map in 'Kanota' × 'Ogle' hexaploid oat (Avena spp.) enhanced by additional markers and a robust framework. CP Wight NA Tinker SF Kianian ME Sorrells LS O'Donoughue DL Hoffman S Groh GJ Scoles CD Li FH Webster, Genome 2003 46 1 28 47 10.1139/g02-099 12669794 (Pubitemid 36453211)
42. Construction and characterization of a bacterial artificial chromosome (BAC) library of hexaploid wheat (Triticum aestivum L.) and validation of genome coverage using locus-specific primers. SD Nilmalgoda S Cloutier AZ Walichnowski, Genome 2003 46 5 870 878 10.1139/g03-067 14608404 (Pubitemid 37481522)
43. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins, Nucleic Acids Res 1997 25 24 4876 4882 9396791 10.1093/nar/25.24.4876 (Pubitemid 28022245)
44. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. SF Altschul TL Madden AA Schaffer JH Zhang Z Zhang W Miller DJ Lipman, Nucleic Acids Res 1997 25 17 3389 3402 9254694 10.1093/nar/25.17.3389 (Pubitemid 27359211)
45. CDD: a conserved domain database for protein classification. A Marchler-Bauer JB Anderson PF Cherukuri C DeWweese-Scott LY Geer M Gwadz SQ He DI Hurwitz JD Jackson ZX Ke, Nucleic Acids Res 2005 33 D192 D196 15608175 10.1093/nar/gki069 (Pubitemid 40207858)