Phytophthora multivora sp. nov., a new species recovered from declining Eucalyptus, Banksia, Agonis and other plant species in Western Australia

Persoonia: Molecular Phylogeny and Evolution of Fungi

Volumn 22, Issue , 2009, Pages 1-13

  Scott, P M ^a   Burgess, T I ^a   Barber, P A ^a   Shearer, B L ^a,b   Stukely, M J C ^b   Hardy, G E S J ^a   Jung, T ^a  

^a MURDOCH UNIVERSITY   (Australia)

^b DEPARTMENT OF ENVIRONMENT AND CONSERVATION   (Australia)

Author keywords

Decline; Dieback; Forest; Jarrah; Phylogeny; Phytophthora citricola; Tuart

Indexed keywords

AGONIS; AGONIS FLEXUOSA; BANKSIA; BANKSIA ATTENUATA; EUCALYPTUS; EUCALYPTUS GOMPHOCEPHALA; EUCALYPTUS MARGINATA; PHYTOPHTHORA; PHYTOPHTHORA CITRICOLA;

EID: 69149093325     PISSN: 00315850     EISSN: None     Source Type: Journal    
DOI: 10.3767/003158509X415450     Document Type: Article

References (60)

1. Andjic V, Barber PA, Carnegie AJ, Hardy GEStJ, Wingfield MJ, Burgess TI. 2007. Phylogenetic reassessment supports accommodation of Phaeo-phleospora and Colletogloeopsis from eucalypts in Kirramyces. Mycological Research 111: 1184-1198.
2. Archibald R. 2006. Fire and the persistence of tuart woodlands. PhD thesis, Murdoch University, Perth, Australia.
3. Balci Y, Balci S, Eggers J, MacDonald WL, Juzwik J, Long RP, Gottschalk KW. 2007. Phytophthora spp. associated with forest soils in eastern and north-central U.S. oak ecosystems. Plant Disease 91: 705-710.
4. Bhat RG, Browne GT. 2007. Genetic diversity in populations of Phytophthora citricola associated with horticultural crops in California. Plant Disease 91: 1556-1563.
5. Brasier CM. 2008. The biosecurity threat to the UK and global environment from international trade in plants. Plant Pathology 57: 792-808.
6. Brasier CM, Beales PA, Kirk SA, Denman S, Rose J. 2005. Phytophthora kernoviae sp. nov., an invasive pathogen causing bleeding stem lesions on forest trees and foliar necrosis of ornamentals in the UK. Mycological Research 109: 835-859.
7. Brasier CM, Cooke DEL, Duncan JM, Hansen EM. 2003. Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-P. megasperma ITS Clade 6, which tend to be high-temperature tolerant and either inbreeding or sterile. Mycological Research 107: 277-290.
8. Brasier CM, Griffin MJ. 1979. Taxonomy of 'Phytophthora palmivora' on cocoa. Transactions of the British Mycological Society 72: 111-143.
9. Brasier CM, Kirk SA, Delcan J, Cooke DEL, Jung T, Man in 't Veld WA. 2004. Phytophthora alni sp. nov. and its variants: designation of emerging heteroploid hybrid pathogens spreading on Alnus trees. Mycological Research 108: 1172-1184.
10. Bunny FJ. 1995. The biology, ecology and taxonomy of Phytophthora citricola in native plant communities in Western Australia. PhD thesis, Murdoch University, Perth, Australia.
11. Burgess TI, Webster JL, Ciampini JA, White D, Hardy GEStJ, Stukely MJC. 2009. Re-evaluation of Phytophthora species isolated during 30 years of vegetation health surveys in Western Australia using molecular techniques. Plant Disease 93: 215-223.
12. Caroselli NE, Tucker CM. 1949. Pit canker of elm. Phytopathology 39: 481-488.
13. Cooke DEL, Drenth A, Duncan JM, Wagels G, Brasier CM. 2000. A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genetics and Biology 30: 17-32.
14. Delcan J, Brasier CM. 2001. Oospore viability and variation in zoospore and hyphal tip derivatives of the hybrid alder Phytophthoras. Forest Pathology 31: 65-83.
15. Dick MW. 1990. Keys to Pythium. University of Reading Press, Reading, United Kingdom.
16. Edwards, T. 2004. Environmental correlates and associations of tuart (Eucalyptus gomphocephala DC.) decline. Masters thesis, Edith Cowen University, Perth, Australia.
17. Erwin DC, Ribeiro OK. 1996. Phytophthora diseases worldwide. APS Press, American Phytopathological Society, St. Paul, Minnesota.
18. Felsenstein J. 1985. Confidence intervals on phylogenetics: an approach using bootstrap. Evolution 39: 783-791.
19. Fontaneto D, Barraclough TG, Chen K, Ricci C, Herniou EA. 2008. Molecular evidence for broad-scale distributions in bdelloid rotifers: everything is not everywhere but most things are very widespread. Molecular Ecology 17: 3136-3146.
20. Greslebin AG, Hansen EM, Sutton W. 2007. Phytophthora austrocedrae sp. nov., a new species associated with Austrocedrus chilensis mortality in Patagonia (Argentinia). Mycological Research 111: 308-316.
21. Hall GS, Dobson S, Nicholls C. 1992. First record of Phytophthora inflata in the United Kingdom. Plant Pathology 41: 95-97.
22. Hall T. 2001. BioEdit version 5.0.6. Department of Microbiology, North Carolina State University. http://www.mbio.ncsu.edu/BioEdit/bioedit.html.
23. Hillis DM. 1992. Signal, noise and reliability in molecular phylogenetic analysis. Journal of Heredity 83: 189-195.
24. Hooper RJ, Sivasithamparam K. 2005. Characterization of damage and biotic factors associated with the decline of Eucalyptus wandoo in southwest Western Australia. Canadian Journal of Forest Research 35: 2589-2602.
25. Jung T. 2008. Beech decline in Central Europe driven by the interaction between Phytophthora infections and climatic extremes. Forest Pathology 38: doi: 10.1111/j.1439-0329.2008.00566.x.
26. Jung T, Blaschke H, Neumann P. 1996. Isolation, identification and pathogenicity of Phytophthora species from declining oak stands. European Journal of Forest Pathology 26: 253-272.
27. Jung T, Blaschke H, Oßwald W. 2000. Involvement of soilborne Phytophthora species in Central European oak decline and the effect of site factors on the disease. Plant Pathology 49: 706-718.
28. Jung T, Blaschke M. 2004. Phytophthora root and collar rot of alders in Bavaria: distribution, modes of spread and possible management strategies. Plant Pathology 53: 197-208.
29. Jung T, Cooke DEL, Blaschke H, Duncan JM, Oßwald W. 1999. Phytophthora quercina sp. nov., causing root rot of European oaks. Mycological Research 103: 785-798.
30. Jung T, Hansen EM, Winton L, Oßwald W, Delatour C. 2002. Three new species of Phytophthora from European oak forests. Mycological Research 106: 397-411.
31. Jung T, Nechwatal J, Cooke DEL, Hartmann G, Blaschke M, Oßwald WF, Duncan JM, Delatour C. 2003. Phytophthora pseuosyringae sp. nov., a new species causing root and collar rot of deciduous tree species in Europe. Mycological Research 107: 772-789.
32. Kroon LPNM, Bakker FT, Bosch GBM van den, Bonants PJM, Flier WG. 2004. Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences. Fungal Genetics and Biology 41: 766-782.
33. Martin FN, Tooley PW. 2003. Phylogenetic relationships among Phytophthora species inferred from sequence analysis of mitochondrially encoded cytochrome oxidase I and II genes. Mycologia 95: 269-284.
34. Moralejo E, Pérez-Sierra AM, Álavez LA, Belbahri L, Lefort F, Descals E. 2008. Multiple alien Phytophthora taxa discovered on diseased ornamental plants in Spain. Plant Pathology 57: 1-11.
35. Oudemans P, Förster H, Coffey MD. 1994. Evidence for distinct isozyme subgroups within Phytophthora citricola and close relationships with P. capsici and P. citrophthora. Mycological Research 98: 189-199.
36. Paap T, Burgess TI, McComb JA, Shearer BL, Hardy GEStJ. 2008. Quambalaria species, including Q. coyrecup sp. nov., implicated in canker and shoot blight diseases causing decline of Corymbia species in the southwest of Western Australia. Mycological Research 112: 57-69.
37. Podger FD, Doepel RF, Zentmyer GA. 1965. Association of Phytophthora cinnamomi with a disease of Eucalyptus marginata forest in Western Australia. Plant Disease Reporter 49: 943-947.
38. Rizzo DM, Garbelotto M, Davidson JM, Slaughter GW, Koike T. 2002. Phytophthora ramorum as the cause of extensive mortality of Quercus spp. and Lithocarpus densiflorus in California. Plant Disease 86: 205-214.
39. Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
40. Sawada K. 1927. Descriptive catalogue of the Formosan fungi. Report of the Government Research Institute Department of Agriculture Formosa 27: 21-24.
41. Schlenzig, A. 2005. First report of Phytophthora inflata on nursery plants of Rhododendron spp., Gaultheria shalon and Vaccinium vitis-idaea in Scotland. Plant Pathology 54: 582.
42. Schubert R, Bahnweg G, Nechwatal J, Jung T, Cooke DEL, Duncan JM, Müller-Starck G, Langebartels C, Sandermann Jr H, Oßwald W. 1999. Detection and quantification of Phytophthora species which are associated with root-rot diseases in European deciduous forests by species-specific polymerase chain reaction. European Journal of Forest Pathology 29: 169-188.
43. Schwingle BW, Smith JA, Blanchette RA. 2007. Phytophthora species associated with diseased woody ornamentals in Minnesota nurseries. Plant Disease 91: 97-102.
44. Shearer BL, Crane CE, Cochrane A. 2004. Quantification of the susceptibility of the native flora of the South-West Botanical Province, Western Australia, to Phytophthora cinnamomi. Australian Journal of Botany 52: 435-443.
45. Shearer BL, Michaelsen BJ, Somerford PJ. 1988. Effects of isolate and time of inoculation on invasion of secondary phloem of Eucalyptus spp. and Banksia grandis by Phytophthora spp. Plant Disease 72: 121-126.
46. Shearer BL, Michaelsen BJ, Warren HJ. 1987. Comparative behaviour of Phytophthora species in the secondary phloem of stems and excised roots of Banksia grandis and Eucalyptus marginata. Australian Journal of Botany 35: 103-110.
47. Shearer BL, Smith IW. 2000. Diseases of Eucalyptus caused by soilborne species of Phytophthora and Pythium. In: Keane PJ, Kile GA, Podger FD, Brown BN (eds), Diseases and pathogens of Eucalyptus: 259-291. CSIRO Publishing, Melbourne, Australia.
48. Shearer BL, Tippett JT. 1989. Jarrah dieback: the dynamics and management of Phytophthora cinnamomi in the jarrah (Eucalyptus marginata) forest of south-western Australia. Research Bulletin No. 3. Department of Conservation and Land Management, Como, Western Australia.
49. Stukely MJC, Shearer BL, Tay FCS, Hart RM, Hart RP. 1997. Phytophthora species in natural vegetation in Western Australia. In: 'Programme and Summaries', 11th Biennial Conference of the Australasian Plant Pathology Society: 199. Perth, Western Australia.
50. Stukely MJC, Webster JL, Ciampini JA, Brown E, Dunstan WA, Hardy GEStJ, Woodman J, Davison EM, Tay FCS. 2007a. Phytophthora inundata isolated from native vegetation in Western Australia. Australasian Plant Pathology 36: 606-608.
51. Stukely MJC, Webster JL, Ciampini JA, Kerp NL, Colquhoun IJ, Dunstan WA, Hardy GEStJ. 2007b. A new homothallic Phytophthora from the jarrah forest in Western Australia. Australian Plant Disease Notes 2: 49-51.
52. Swofford DL. 2003. PAUP*: Phylogenetic analysis using parsimony (* and other methods), version 4.0b 10. Sinauer Associates, Sunderland, Massa-chusetts.
53. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24: 4876-4882.
54. Vettraino AM, Barzanti GP, Bianco MC, Ragazzi A, Capretti P, Paoletti E, Luisi N, Anselmi N, Vannini A. 2002. Occurrence of Phytophthora species in oak stands in Italy and their association with declining oak trees. Forest Pathology 32: 19-28.
55. Vettraino AM, Natili G, Anselmi N, Vannini A. 2001. Recovery and pathogenicity of Phytophthora species associated with a resurgence of ink disease in Castanea sativa in Italy. Plant Pathology 50: 90-96.
56. Villa NO, Kageyama K, Asano T, Suga H. 2006. Phylogenetic relationships of Pythium and Phytophthora species based on ITS rDNA, cytochrome oxidase II and beta-tubulin gene sequences. Mycologia 98: 410-422.
57. Waterhouse GM, Waterston JM. 1964. Phytophthora syringae. CMI Descriptions of Pathogenic Fungi and Bacteria 32: 1-2.
58. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds), PCR Protocols: a guide to methods and applications: 315-321. Academic Press, San Diego, California.
59. Zea-Bonilla T, Martin-Sánchez PM, Hermoso JM, Carmona MP, Segundo E, Pérez-Jimenéz RM. 2007. First report of Phytophthora citricola on Mangifera indica in Spain. Plant Pathology 56: 356.
60. Zentmyer GA, Jefferson L, Hickman CJ, Chang-Ho Y. 1974. Studies of Phytophthora citricola, isolated from Persea americana. Mycologia 66: 830-845.