Detection of four human coronaviruses in respiratory infections in children: A one-year study in Colorado

Journal of Medical Virology

Volumn 81, Issue 9, 2009, Pages 1597-1604

  Dominguez, Samuel R ^a,b   Robinson, Christine C ^a   Holmes, Kathryn V ^a  

^a UNIVERSITY OF COLORADO SCHOOL OF MEDICINE   (United States)

^b CHILDREN S HOSPITAL COLORADO   (United States)

Author keywords

Children; Coronavirus; Respiratory infection; Rhinovirus

Indexed keywords

ARTICLE; CHILD; CHILD HOSPITALIZATION; CONTROLLED STUDY; CORONAVIRUS; DIARRHEA; FEMALE; HUMAN; IMMUNE DEFICIENCY; MAJOR CLINICAL STUDY; MALE; MENINGOENCEPHALITIS; PRESCHOOL CHILD; RESPIRATORY TRACT INFECTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SCHOOL CHILD; UNITED STATES; VIRUS DETECTION; VOMITING;

ADOLESCENT; CHILD; CHILD, PRESCHOOL; COLORADO; CORONAVIRUS; CORONAVIRUS INFECTIONS; FEMALE; HOSPITALIZATION; HUMANS; INFANT; INFANT, NEWBORN; MALE; RESPIRATORY TRACT INFECTIONS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEASONS;

CORONAVIRUS; RHINOVIRUS;

EID: 68949161934     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.21541     Document Type: Article

References (53)

1. Arbour N, Day R, Newcombe J, Talbot PJ. 2000. Neuroinvasion by human respiratory coronaviruses. J Virol 74:8913-8921.
2. Arden KE, Nissen MD, Sloots TP, Mackay IM. 2005. New human coronavirus, HCoV-NL63, associated with severe lower respiratory tract disease in Australia. J Med Virol 75:455-462. (Pubitemid 40175913)
3. Bastien N, Robinson JL, Tse A, Lee BE, Hart L, Li Y. 2005. Human coronavirus NL-63 infections in children: A 1-year study. J Clin Microbiol 43:4567-4573. (Pubitemid 41298244)
4. Bellau-Pujol S, Vabret A, Legrand L, Dina J, Gouarin S, Petitjean- Lecherbonnier J, Pozzetto B, Ginevra C, Freymuth F. 2005. Development of three multiplex RT-PCR assays for the detection of 12 respiratory RNA viruses. J Virol Methods 126:53-63. (Pubitemid 40558743)
5. Briese T, Renwick N, Venter M, Jarman RG, Ghosh D, Kondgen S, Shrestha SK, Hoegh AM, Casas I, Adjogoua EV, Akoua-Koffi C, Myint KS, Williams DT, Chidlow G, van den Berg R, Calvo C, Koch O, Palacios G, Kapoor V, Villari J, Dominguez SR, Holmes KV, Harnett G, Smith D, Mackenzie JS, Ellerbrok H, Schweiger B, Schonning K, Chadha MS, Leendertz FH, Mishra AC, Gibbons RV, Holmes EC, Lipkin WI. 2008. Global distribution of novel rhinovirus genotype. Emerg Infect Dis 14:944-947. (Pubitemid 351838607)
6. Cabirac GF, Soike KF, Zhang JY, Hoel K, Butunoi C, Cai GY, Johnson S, Murray RS. 1994. Entry of coronavirus into primate CNS following peripheral infection. Microb Pathog 16:349-357. (Pubitemid 24270621)
7. Caul EO, Ashley CR, Egglestone SI. 1977. Recognition of human enteric coronaviruses by electron microscopy.Med Lab Sci 34:259-263.
8. Chiu SS, Chan KH, Chu KW, Kwan SW, Guan Y, Poon LL, Peiris JS. 2005. Human coronavirus NL63 infection and other coronavirus infections in children hospitalizedwith acute respiratory disease in Hong Kong, China. Clin Infect Dis 40:1721-1729. (Pubitemid 40803500)
9. Coiras MT, Aguilar JC, Garcia ML, Casas I, Perez-Brena P. 2004. Simultaneous detection of fourteen respiratory viruses in clinical specimens by two multiplex reverse transcription nested-PCR assays. J Med Virol 72:484-495. (Pubitemid 38133991)
10. Dare RK, Fry AM, Chittaganpitch M, Sawanpanyalert P, Olsen SJ, Erdman DD. 2007. Human coronavirus infections in rural Thailand: A comprehensive study using real-time reverse-transcription polymerase chain reaction assays. J Infect Dis 196:1321-1328.
11. de Souza Luna LK, Heiser V, Regamey N, Panning M, Drexler JF, Mulangu S, Poon L, Baumgarte S, Haijema BJ, Kaiser L, Drosten C. 2007. Generic detection of coronaviruses and differentiation at the prototype strain level by reverse transcription-PCR and nonfluorescent low-density microarray. J Clin Microbiol 45:1049-1052. (Pubitemid 46427736)
12. Dominguez SR, Briese T, Palacios G, Hui J, Villari J, Kapoor V, Tokarz R, Glode MP, Anderson MS, Robinson CC, Holmes KV, Lipkin WI. 2008. Multiplex MassTag-PCR for respiratory pathogens in pediatric nasopharyngeal washes negative by conventional diagnostic testing shows a high prevalence of viruses belonging to a newly recognized rhinovirus clade. J Clin Virol 43:219-222.
13. Drosten C, Gunther S, Preiser W, van der Werf S, Brodt HR, Becker S, Rabenau H, Panning M, Kolesnikova L, Fouchier RA, Berger A, Burguiere AM, Cinatl J, Eickmann M, Escriou N, Grywna K, Kramme S, Manuguerra JC, Muller S, Rickerts V, Sturmer M, Vieth S, Klenk HD, Osterhaus AD, Schmitz H, Doerr HW. 2003. Identification of a novel coronavirus in patients with severe acute respiratory syndrome. N Engl J Med 348:1967-1976.
14. Ebihara T, Endo R, Ma X, Ishiguro N, Kikuta H. 2005. Detection of human coronavirus NL63 in young children with bronchiolitis. J Med Virol 75:463-465. (Pubitemid 40175914)
15. Esper F,Weibel C, Ferguson D, Landry ML, Kahn JS. 2005. Evidence of a novel human coronavirus that is associated with respiratory tract disease in infants and young children. J Infect Dis 191:492-498. (Pubitemid 40216662)
16. Esper F, Weibel C, Ferguson D, Landry ML, Kahn JS. 2006. Coronavirus HKU1 infection in the United States. Emerg Infect Dis 12:775-779. (Pubitemid 43726853)
17. Fendrick AM, Monto AS, Nightengale B, Sarnes M. 2003. The economic burden of non-influenza-related viral respiratory tract infection in the United States. Arch Intern Med 163:487-494. (Pubitemid 36244917)
18. Gerna G, Percivalle E, Sarasini A, Campanini G, Piralla A, Rovida F, Genini E, Marchi A, Baldanti F. 2007. Human respiratory coronavirus HKU1 versus other coronavirus infections in Italian hospitalised patients. J Clin Virol 38:244-250. (Pubitemid 46275520)
19. Glaser CA, Gilliam S, Schnurr D, Forghani B, Honarmand S, Khetsuriani N, Fischer M, Cossen CK, Anderson LJ. 2003. In search of encephalitis etiologies: Diagnostic challenges in the California Encephalitis Project, 1998-2000. Clin Infect Dis 36: 731-742.
20. Griffin MR, Walker FJ, Iwane MK, Weinberg GA, Staat MA, Erdman DD. 2004. Epidemiology of respiratory infections in young children: Insights from the new vaccine surveillance network. Pediatr Infect Dis J 23:S188-S192.
21. Heikkinen T, Jarvinen A. 2003. The common cold. Lancet 361:51-59.
22. Heim A, Ebnet C, Harste G, Pring-Akerblom P. 2003. Rapid and quantitative detection of human adenovirus DNA by real-time PCR. J Med Virol 70:228-239. (Pubitemid 36520631)
23. Holmes KV. 2001. Coronaviruses. In: Knipe D, editor. Fields' virology, 4th edition. Philadelphia: Lippincott Williams and Wilkins. pp 1187-1203.
24. Houtman JJ, Fleming JO. 1996. Pathogenesis of mouse hepatitis virusinduced demyelination. J Neurovirol 2:361-376.
25. Kaiser L, Regamey N, Roiha H, Deffernez C, Frey U. 2005. Human coronavirus NL63 associated with lower respiratory tract symptoms in early life. Pediatr Infect Dis J 24:1015-1017. (Pubitemid 41689614)
26. Klig JE. 2004. Current challenges in lower respiratory infections in children. Curr Opin Pediatr 16:107-112. (Pubitemid 38168170)
27. Klig JE, Shah NB. 2005. Office pediatrics: Current issues in lower respiratory infections in children. Curr Opin Pediatr 17:111-118.
28. Ksiazek TG, Erdman D, Goldsmith CS, Zaki SR, Peret T, Emery S, Tong S, Urbani C, Comer JA, LimW,Rollin PE, Dowell SF, Ling AE, Humphrey CD, Shieh WJ,Guarner J, Paddock CD, Rota P, Fields B, DeRisi J, Yang JY, Cox N, Hughes JM, LeDuc JW, Bellini WJ, Anderson LJ. 2003. A novel coronavirus associated with severe acute respiratory syndrome. N Engl J Med 348:1953-1966. (Pubitemid 36569984)
29. Kusel MM, de Klerk NH, Holt PG, Kebadze T, Johnston SL, Sly PD. 2006. Role of respiratory viruses in acute upper and lower respiratory tract illness in the first year of life: A birth cohort study. Pediatr Infect Dis J 25:680-686. (Pubitemid 44162123)
30. Kuypers J, Martin ET, Heugel J, Wright N, Morrow R, Englund JA. 2007. Clinical disease in children associated with newly described coronavirus subtypes. Pediatrics 119:e70-e76. (Pubitemid 46397808)
31. Lau SK, Woo PC, Yip CC, Tse H, Tsoi HW, Cheng VC, Lee P, Tang BS, Cheung CH, Lee RA, So LY, Lau YL, Chan KH, Yuen KY. 2006. CoronavirusHKU1and other coronavirus infections in Hong Kong. J Clin Microbiol 44:2063-2071. (Pubitemid 43902154)
32. Lau SK, Yip CC, Tsoi HW, Lee RA, So LY, Lau YL, Chan KH, Woo PC, Yuen KY. 2007. Clinical features and complete genome characterization of a distinct human rhinovirus (HRV) genetic cluster, probably representing a previously undetected HRV species, HRVC, associated with acute respiratory illness in children. J Clin Microbiol 45:3655-3664.
33. Leung WK, To KF, Chan PK, Chan HL, Wu AK, Lee N, Yuen KY, Sung JJ. 2003. Enteric involvement of severe acute respiratory syndrome- associated coronavirus infection. Gastroenterology 125: 1011-1017. (Pubitemid 37193447)
34. Lu X, Chittaganpitch M, Olsen SJ, Mackay IM, Sloots TP, Fry AM, Erdman DD. 2006. Real-time PCR assays for detection of bocavirus in human specimens. J Clin Microbiol 44:3231-3235. (Pubitemid 44413757)
35. Maertzdorf J,Wang CK, Brown JB, Quinto JD, Chu M, de GraafM, van denHoogen BG, Spaete R, Osterhaus AD, Fouchier RA. 2004. Realtime reverse transcriptase PCR assay for detection of human metapneumoviruses from all known genetic lineages. J Clin Microbiol 42:981-986.
36. McErlean P, Shackelton LA, Lambert SB, Nissen MD, Sloots TP, Mackay IM. 2007. Characterisation of a newly identified human rhinovirus, HRV-QPM, discovered in infants with bronchiolitis. J Clin Virol 39:67-75. (Pubitemid 46777432)
37. Miller EK, Lu X, Erdman DD, Poehling KA, Zhu Y, Griffin MR, Hartert TV, Anderson LJ,Weinberg GA, Hall CB, Iwane MK, Edwards KM. 2007. Rhinovirus-associated hospitalizations in young children. J Infect Dis 195:773-781.
38. Moes E, Vijgen L, Keyaerts E, Zlateva K, Li S,MaesP, Pyrc K, Berkhout B, van der Hoek L, Van RanstM. 2005. A novel pancoronavirus RTPCR assay: Frequent detection of human coronavirus NL63 in children hospitalized with respiratory tract infections in Belgium. BMC Infect Dis 5:6.
39. Murray RS, Cai GY, Hoel K, Zhang JY, Soike KF, Cabirac GF. 1992. Coronavirus infects and causes demyelination in primate central nervous system. Virology 188:274-284.
40. Pyrc K, Berkhout B, van der Hoek L. 2007. The novel human coronaviruses NL63 and HKU1. J Virol 81:3051-3057. (Pubitemid 46456614)
41. Resta S, Luby JP, Rosenfeld CR, Siegel JD. 1985. Isolation and propagation of a human enteric coronavirus. Science 229:978-981. (Pubitemid 16248490)
42. Rota PA, Oberste MS, Monroe SS, Nix WA, Campagnoli R, Icenogle JP, Penaranda S, Bankamp B, Maher K, Chen MH, Tong S, Tamin A, Lowe L, Frace M, DeRisi JL, Chen Q, Wang D, Erdman DD, Peret TC, Burns C, Ksiazek TG, Rollin PE, Sanchez A, Liffick S, Holloway B, Limor J, McCaustland K, Olsen-Rasmussen M, Fouchier R, Gunther S, Osterhaus AD, Drosten C, Pallansch MA, Anderson LJ, Bellini WJ. 2003. Characterization of a novel coronavirus associated with severe acute respiratory syndrome. Science 300: 1394-1399. (Pubitemid 36638152)
43. Saif LJ. 1996. Mucosal immunity: An overview and studies of enteric and respiratory coronavirus infections in a swine model of enteric disease. Vet Immunol Immunopathol 54:163-169.
44. Simon A, Volz S, Hofling K, Kehl A, Tillman R, Muller A, Kupfer B, Eis-Hubinger AM, Lentze MJ, Bode U, SchildgenO. 2007. Acute life threatening event (ALTE) in an infant with human coronavirus HCoV-229E infection. Pediatr Pulmonol 42:393-396.
45. Sloots TP, McErlean P, Speicher DJ, Arden KE, Nissen MD, Mackay IM. 2006. Evidence of human coronavirus HKU1 and human bocavirus in Australian children. J Clin Virol 35:99-102. (Pubitemid 43020961)
46. Vabret A, Dina J, Gouarin S, Petitjean J, Corbet S, Freymuth F. 2006. Detection of the new human coronavirusHKU1:Areport of 6 cases. Clin Infect Dis 42:634-639. (Pubitemid 43271376)
47. Vabret A, Dina J, Gouarin S, Petitjean J, Tripey V, Brouard J, Freymuth F. 2008. Human (non-severe acute respiratory syndrome) coronavirus infections in hospitalised children in France. J Paediatr Child Health 44:176-181.
48. Vabret A, Mourez T, Dina J, van der Hoek L, Gouarin S, Petitjean J, Brouard J, Freymuth F. 2005. Human coronavirus NL63, France. Emerg Infect Dis 11:1225-1229.
49. van der Hoek L, Pyrc K, Jebbink MF, Vermeulen-OostW,Berkhout RJ, Wolthers KC,Wertheim-van Dillen PM, Kaandorp J, Spaargaren J, Berkhout B. 2004. Identification of a new human coronavirus. Nat Med 10:368-373.
50. van der Hoek L, Sure K, Ihorst G, Stang A, Pyrc K, Jebbink MF, Petersen G, Forster J, Berkhout B, Uberla K. 2005. Croup is associated with the novel coronavirus NL63. PLoS Med 2:e240. (Pubitemid 46179248)
51. WHO. 2003. The World Health Report 2003: Shaping the future. Geneva: World Health Organization.
52. WHO. 2008. The Global Burden of Disease: 2004 Update. Geneva, Switzerland: WHO Press.
53. Woo PC, Lau SK, Chu CM, Chan KH, Tsoi HW, Huang Y, Wong BH, Poon RW, Cai JJ, Luk WK, Poon LL, Wong SS, Guan Y, Peiris JS, Yuen KY. 2005. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J Virol 79:884-895. (Pubitemid 40053872)