Uncovering the arabidopsis thaliana nectary transcriptome: Investigation of differential gene expression in floral nectariferous tissues

BMC Plant Biology

Volumn 9, Issue , 2009, Pages

  Kram, Brian W ^a   Xu, Wayne W ^b   Carter, Clay J ^a  

^a UNIVERSITY OF MINNESOTA DULUTH   (United States)

^b UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; MAGNOLIOPHYTA;

PLANT RNA;

ARABIDOPSIS; ARTICLE; CLUSTER ANALYSIS; DNA MICROARRAY; FLOWER; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PLANT GENE; PROMOTER REGION;

ARABIDOPSIS; CLUSTER ANALYSIS; FLOWERS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROMOTER REGIONS, GENETIC; RNA, PLANT;

EID: 68949086927     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-9-92     Document Type: Article

References (77)

1. Evolution and diversity of floral rewards. BB Simpson JL Neff, Handbook of experimental pollination biology New York: Van Nostrand Reinhold, Jones CE, Little RJ, 1983 142 159
2. A brief historical review of chemistry of floral nectar. H Baker I Baker, The Biology of Nectaries New York: Columbia University Press, Bentley BL, 1983 126 152
3. Amino acids in nectar and their evolutionary significance. H Baker I Baker, Nature 1973 241 543 545 4693956
4. Studies of nectar-constitution and pollinator-plant coevolution. H Baker I Baker, Coevolution of animals and plants Austin, TX: University of Texas Press, Gilbert LE, Raven PH, 1975 100 140
5. Volatile constituents of Cactylanthus taylorii flower nectar in relation to flower pollination and browsing by animals. CE Ecroyd RA Franich HW Kroese D Steward, Phytochemistry 1995 40 1387 1389
6. Pyrrolizidine alkaloids: their occurrence in honey from tansy ragwort (Senecio jacobaea L.). ML Deinzer PA Thomson DM Burgett DL Isaacson, Science 1977 195 497 499 835011
7. Floral nectar phenolics as biochemical markers for the botanical origin of heather honey. F Ferreres P Andrade MI Gil FA Tomas Barberan, Z Lebensm Unters Forsch 1996 202 40 44
8. VV Roshchina VD Roshchina, The Excretory Function of Higher Plants New York: Springer-Verlag 1993
9. The vitamin C content of flower nectar of certain Labiatae. C Griebel G Hess, Z Unters Lebensm 1990 79 168 171
10. Analysis of cations in nectars by means of a laser microprobe mass analyser (LAMMA). G Heinrich, Beitr Biol Pflanz 1989 64 293 308
11. Flowers offering fatty oil instead of nectar. S Vogel, Abstracts XIth International Botany Congress 1969 Seattle, WA
12. Identification, cloning and characterization of a GDSL lipase secreted into the nectar of Jacaranda mimosifolia. BW Kram EA Bainbridge MADN Perera C Carter, Plant Mol Biol 2008 68 173 183 18553138
13. Is the nectar redox cycle a floral defense against microbial attack? C Carter RW Thornburg, Trends Plant Sci 2004 9 320 324 15231276
14. Nectar-carbohydrate production and composition vary in relation to nectary anatomy and location within individual flowers of several species of Brassicaceae. AR Davis JD Pylatuik JC Paradis NH Low, Planta 1998 205 305 318 9637073
15. RF Evert SE Eichorn, Esau's Plant Anatomy: Meristems, Cells, and Tissues of the Plant Body: Their Structure, Function, and Development Wilmington, DE: Wiley-Liss 3 2006
16. Nectary structure and ultrastructure. M Nepi, Nectaries and nectar Dordrecht: Springer Netherlands, Nicolson SW, Nepi M, Pacini E, 2007 129 166
17. Ultrastructural investigations on floral nectary of Arabidopsis thaliana prepared by high pressure freezing and freeze substitution. J Zhu Z Hu IM Muuml, Biol Cell 1995 84 225
18. Cytological studies on the development of sieve element and floral nectary tissue in Arabidopsis thaliana. J Zhu ZH Hu, Acta Bot Sin 2002 44 9 14
19. Ultrastructure of the floral nectary of Arabidopsis thaliana L. prepared from high pressure freezing and freeze substitution. J Zhu ZH Hu M Müller, Acta Bot Sin 1997 39 289 295
20. Transient starch metabolism in ornamental tobacco floral nectaries regulates nectar composition and release. G Ren RA Healy AM Klyne HT Horner MG James RW Thornburg, Plant Sci 2007 173 277 290
21. A Fahn, Secretory Tissues in Plants London: Academic Press 1979
22. Ultrastructure of nectaries in relation to nectar secretion. A Fahn, Am J Bot 1979 66 977 985
23. Nectar production and presentation. E Pacini M Nepi, Nectaries and nectar Dordrecht: Springer, Nicolson SW, Nepi M, Pacini E, 2007
24. Tansley Review No. 14 Secretory Tissues in Vascular Plants. A Fahn, New Phytologist 1988 108 229 257
25. The ultrastructure of floral and extrafloral nectaries. L Durkee, The Biology of Nectaries New York: Columbia University Press, Bentley B, Elias T, 1983 1 29
26. CRABS CLAW, a gene that regulates carpel and nectary development in Arabidopsis, encodes a novel protein with zinc finger and helix-loop-helix domains. JL Bowman DR Smyth, Development 1999 126 2387 2396 10225998
27. The Arabidopsis nectary is an ABC-independent floral structure. SF Baum Y Eshed JL Bowman, Development 2001 128 4657 4667 11714690
28. Activation of CRABS CLAW in the nectaries and carpels of Arabidopsis. JY Lee SF Baum J Alvarez A Patel DH Chitwood JL Bowman, Plant Cell 2005 17 25 36 15598802
29. The BLADE-ON-PETIOLE genes are essential for abscission zone formation in Arabidopsis. SM McKim GE Stenvik MA Butenko W Kristiansen SK Cho SR Hepworth RB Aalen GW Haughn, Development 2008 135 1537 1546 18339677
30. Recruitment of CRABS CLAW to promote nectary development within the eudicot clade. JY Lee SF Baum SH Oh CZ Jiang JC Chen JL Bowman, Development 2005 132 5021 5032 16236772
31. Nectarin I is a novel, soluble germin-like protein expressed in the nectar of Nicotiana sp. C Carter RA Graham RW Thornburg, Plant Mol Biol 1999 41 207 216 10579488
32. The nectary-specific pattern of expression of the tobacco Nectarin I promoter is regulated by multiple promoter elements. C Carter RW Thornburg, Plant Mol Biol 2003 51 451 457 12650612
33. Tobacco nectarin V is a flavin-containing berberine bridge enzyme-like protein with glucose oxidase activity. CJ Carter RW Thornburg, Plant Physiol 2004 134 460 469 14730073
34. Tobacco Nectarin III is a bifunctional enzyme with monodehydroascorbate reductase and carbonic anhydrase activities. CJ Carter RW Thornburg, Plant Mol Biol 2004 54 415 425 15284496
35. NEC1, a novel gene, highly expressed in nectary tissue of Petunia hybrida. YX Ge GC Angenent PE Wittich J Peters J Franken M Busscher LM Zhang E Dahlhaus MM Kater GJ Wullems T Creemers-Molenaar, Plant J 2000 24 725 734 11135107
36. Expression patterns of myb genes from Antirrhinum flowers. D Jackson F Culianez-Macia AG Prescott K Roberts C Martin, Plant Cell 1991 3 115 125 1840903
37. NTR1 encodes a floral nectary-specific gene in Brassica campestris L. ssp. pekinensis. JT Song HS Seo SI Song JS Lee YD Choi, Plant Mol Biol 2000 42 647 655 10809010
38. Two sesquiterpene synthases are responsible for the complex mixture of sesquiterpenes emitted from Arabidopsis flowers. D Tholl F Chen J Petri J Gershenzon E Pichersky, Plant J 2005 42 757 771 15918888
39. Temporal relationship between the transcription of two Arabidopsis MADS box genes and the floral organ identity genes. B Savidge SD Rounsley MF Yanofsky, Plant Cell 1995 7 721 733 7647563
40. The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. H Goda E Sasaki K Akiyama A Maruyama-Nakashita K Nakabayashi W Li M Ogawa Y Yamauchi J Preston K Aoki, Plant J 2008 55 526 542 18419781
41. A gene expression map of Arabidopsis thaliana development. M Schmid TS Davison SR Henz UJ Pape M Demar M Vingron B Scholkopf D Weigel JU Lohmann, Nat Genet 2005 37 501 506 15806101
42. Flower visitors in a natural population of Arabidopsis thaliana. MH Hoffmann M Bremer K Schneider F Burger E Stolle G Moritz, Plant Biol 2003 5 491 494
43. Floral nectar secretion and ploidy in Brassica rapa and B. napus (Brassicaceae) II. Quantified variability of nectary structure and function in rapid-cycling lines. AR Davis LC Fowke VK Sawhney NH Low, Ann Bot 1996 77 223 234
44. Pollination and contamination of Brassica oleracea L. M Nieuwhof, Euphytica 1963 12 17 26
45. Study of the life history of Brassica oleracea. OH Pearson, Bot Gaz 1933 94 534 550
46. Insect pollinators of toria (Brassica napus Linn., var. dichotoma prain) and sarson (B. campestris Linn., var. sarson prain) at Lyallpur. KA Rahman, Indian J Agr Sci 1940 10 422 447
47. The economic effectiveness of bee polination on winter rape (Brassica napus L., var. oleifera metz.). V Vesely, Min Zemedel Lesn a Vodniho Hospodar Ust Vedtach Inform Zemedel Ekon 1962 8 659 673
48. Do flowers reabsorb nectar? A Brquez SA Corbet, Funct Ecol 1991 5 369 379
49. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. T Czechowski M Stitt T Altmann MK Udvardi WR Scheible, Plant Physiol 2005 139 5 17 16166256
50. Dissecting salt stress pathways. SS Ma QQ Gong HJ Bohnert, J Exp Bot 2006 57 1097 1107 16510518
51. Localization of sucrose synthase in developing seed and siliques of Arabidopsis thaliana reveals diverse roles for SUS during development. H Fallahi GN Scofield MR Badger WS Chow RT Furbank YL Ruan, J Exp Bot 2008 59 3283 3295 18635527
52. Tissue-specific expression of a gene encoding a cell wall-localized lipid transfer protein from Arabidopsis. S Thoma U Hecht A Kippers J Botella S Devries C Somerville, Plant Physiol 1994 105 35 45 8029357
53. Genevestigator. Arabidopsis Microarray Database and Analysis Toolbox. P Zimmermann M Hirsch-Hoffmann L Hennig W Gruissem, Plant Physiol 2004 136 2621 2632 15375207
54. JL Bowman, Arabidopsis: An Atlas of Morphology and Development New York: Springer-Verlag New York, Inc 1994
55. Source-sink regulation by sugar and stress. T Roitsch, Curr Opin Plant Biol 1999 2 198 206 10375568
56. Roles of cell-wall invertases and monosaccharide transporters in the growth and development of Arabidopsis. SM Sherson HL Alford SM Forbes G Wallace SM Smith, J Exp Bot 2003 54 525 531 12508063
57. TAIR AraCyc Database. http://www.arabidopsis.org/biocyc/index.jsp
58. Members of the YABBY gene family specify abaxial cell fate in Arabidopsis. KR Siegfried Y Eshed SF Baum D Otsuga GN Drews JL Bowman, Development 1999 126 4117 4128 10457020
59. CRABS CLAW and SPATULA, two Arabidopsis genes that control carpel development in parallel with AGAMOUS. J Alvarez DR Smyth, Development 1999 126 2377 2386 10225997
60. FORCA, a promoter element that responds to crosstalk between defense and light signaling. A Evrard T Ndatimana T Eulgem, BMC Plant Biol 2009 9 2 19128484
61. AGL15, a MADS domain protein expressed in developing embryos. GR Heck SE Perry KW Nichols DE Fernandez, Plant Cell 1995 7 1271 1282 7549483
62. The MADS-domain protein AGAMOUS-like 15 accumulates in embryonic tissues with diverse origins. SE Perry MD Lehti DE Fernandez, Plant Physiol 1999 120 121 129 10318690
63. Transcriptional repression by AtMYB4 controls production of UV-protecting sunscreens in Arabidopsis. HL Jin E Cominelli P Bailey A Parr F Mehrtens J Jones C Tonelli B Weisshaar C Martin, EMBO J 2000 19 6150 6161 11080161
64. Arabidopsis UVR8 regulates ultraviolet-B signal transduction and tolerance and contains sequence similarity to human Regulator of Chromatin Condensation 1. DJ Kliebenstein JE Lim LG Landry RL Last, Plant Physiol 2002 130 234 243 12226503
65. Role of auxin in regulating Arabidopsis flower development. R Aloni E Aloni M Langhans CI Ullrich, Planta 2006 223 315 328 16208486
66. Growth regulators affect nectar-pollen production and insect foraging in Brassica seed crops. R Mishra S Sharma, Curr Sci India 1988 57 1297 1299
67. Early flower development in Arabidopsis. DR Smyth JL Bowman EM Meyerowitz, Plant Cell 1990 2 755 767 2152125
68. Denaturing Agarose Gel Electrophoresis of RNA. http://www.ambion.com/ techlib/append/supp/rna-gel.html
69. Summaries of Affymetrix GeneChip probe level data. RA Irizarry BM Bolstad F Collin LM Cope B Hobbs TP Speed, Nucleic Acids Res 2003 31 e15 12582260
70. Effects of pooling mRNA in microarray class comparisons. JH Shih AM Michalowska K Dobbin YM Ye TH Qiu JE Green, Bioinformatics 2004 20 3318 3325 15247103
71. Effect of pooling samples on the efficiency of comparative studies using microarrays. SD Zhang TW Gant, Bioinformatics 2005 21 4378 4383 16234321
72. Statistical significance for genomewide studies. JD Storey R Tibshirani, P Natl Acad Sci USA 2003 100 9440 9445
73. The Arabidopsis Information Resource (TAIR). http://www.arabidopsis.org
74. OMICS Viewer of the Plant Metabolic Network. http://www.plantcyc.org/ tools/tools-overview.faces
75. Java TreeView. http://bonsai.ims.u-tokyo.ac.jp/∼mdehoon/software/ cluster/software.htm
76. Arabidopsis thaliana expression network analysis (Athena). http://www.bioinformatics2.wsu.edu/cgi-bin/Athena/cgi/home.pl
77. Athena: a resource for rapid visualization and systematic analysis of Arabidopsis promoter sequences. TR O'connor C Dyreson JJ Wyrick, Bioinformatics 2005 21 4411 4413 16223790