FORCA, a promoter element that responds to crosstalk between defense and light signaling

BMC Plant Biology

Volumn 9, Issue , 2009, Pages

  Evrard, Alexandre ^a,b   Ndatimana, Theogene ^a   Eulgem, Thomas ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; HYALOPERONOSPORA PARASITICA; NICOTIANA BENTHAMIANA;

ARABIDOPSIS PROTEIN;

ARABIDOPSIS; ARTICLE; DARKNESS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; IMMUNOLOGY; LIGHT; METABOLISM; MICROBIOLOGY; MULTIGENE FAMILY; OOMYCETES; PLANT DISEASE; PROMOTER REGION; SIGNAL TRANSDUCTION; TOBACCO; TRANSGENIC PLANT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; DARKNESS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; LIGHT; MULTIGENE FAMILY; OOMYCETES; PLANT DISEASES; PLANTS, GENETICALLY MODIFIED; PROMOTER REGIONS, GENETIC; SIGNAL TRANSDUCTION; TOBACCO; TRANSCRIPTION, GENETIC;

EID: 60349118246     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-9-2     Document Type: Article

References (56)

1. Innate immunity in plants and animals: striking similarities and obvious differences. T Nürnberger F Brunner B Kemmerling L Piater, Immunol Rev 2004 198 249 266 10.1111/j.0105-2896.2004.0119.x 15199967
2. Host-microbe interactions: shaping the evolution of the plant immune response. ST Chisholm G Coaker B Day BJ Staskawicz, Cell 2006 124 4 803 814 10.1016/j.cell.2006.02.008 16497589
3. The plant immune system. JD Jones JL Dangl, Nature 2006 444 7117 323 329 10.1038/nature05286 17108957
4. Wake of the flood: ascribing functions to the wave of type III effector proteins of phytopathogenic bacteria. JH Chang AK Goel SR Grant JL Dangl, Curr Opin Microbiol 2004 7 1 11 18 10.1016/j.mib.2003.12.006 15036134
5. Nitric oxide and salicylic acid signaling in plant defense. DF Klessig J Durner R Noad DA Navarre D Wendehenne D Kumar JM Zhou J Shah S Zhang P Kachroo Y Trifa D Pontier E Lam H Silva, Proc Natl Acad Sci USA 2000 97 16 8849 8855 10922045 10.1073/pnas.97.16.8849
6. Recognition and response in the plant immune system. Z Nimchuk T Eulgem IB Holt JL Dangl, Annu Rev Genet 2003 37 579 609 10.1146/annurev.genet.37. 110801.142628 14616074
7. Contrasting mechanisms of defense against biotrophic and necrotrophic pathogens. J Glazebrook, Annu Rev Phytopathol 2005 43 205 227 10.1146/annurev.phyto.43.040204.135923 16078883
8. The outcomes of concentration-specific interactions between salicylate and jasmonate signaling include synergy, antagonism, and oxidative stress leading to cell death. LA Mur P Kenton R Atzorn O Miersch C Wasternack, Plant Physiol 2006 140 1 249 262 16377744 10.1104/pp.105.072348
9. NPR1 modulates cross-talk between salicylate- and jasmonate-dependent defense pathways through a novel function in the cytosol. SH Spoel A Koornneef SM Claessens JP Korzelius JA Van Pelt MJ Mueller AJ Buchala JP Metraux R Brown K Kazan LC Van Loon X Dong CM Pieterse, Plant Cell 2003 15 3 760 770 12615947 10.1105/tpc.009159
10. Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping. J Glazebrook W Chen B Estes HS Chang C Nawrath JP Metraux T Zhu F Katagiri, Plant J 2003 34 2 217 228 10.1046/j.1365-313X.2003.01717.x 12694596
11. Pathological hormone imbalances. A Robert-Seilaniantz L Navarro R Bari JD Jones, Curr Opin Plant Biol 2007 10 4 372 379 10.1016/j.pbi.2007.06.003 17646123
12. Phytochrome signalling modulates the SA-perceptive pathway in Arabidopsis. T Genoud AJ Buchala NH Chua JP Metraux, Plant J 2002 31 1 87 95 10.1046/j.1365-313X.2002.01338.x 12100485
13. Light regulation and daytime dependency of inducible plant defenses in Arabidopsis: phytochrome signaling controls systemic acquired resistance rather than local defense. T Griebel J Zeier, Plant Physiol 2008 147 2 790 801 10.1104/pp.108.119503 18434604
14. Crosstalk among stress responses in plants: pathogen defense overrides UV protection through an inversely regulated ACE/ACE type of light-responsive gene promoter unit. E Logemann K Hahlbrock, Proc Natl Acad Sci USA 2002 99 4 2428 2432 11842215 10.1073/pnas.042692199
15. Gene Expression Signatures from Three Genetically Separable Resistance Gene Signaling Pathways for Downy Mildew Resistance. T Eulgem VJ Weigman H-S Chang JM McDowell EB Holub J Glazebrook Ta Zhu JL Dangl, Plant Physiology 2004 135 1129 1144 15181204 10.1104/pp.104.040444
16. Arabidopsis WRKY70 is required for full RPP4-mediated disease resistance and basal defense against Hyaloperonospora parasitica. C Knoth J Ringler JL Dangl T Eulgem, Molecular Plant Microbe Interactions 2007 20 2 120 128 10.1094/MPMI-20-2-0120 17313163
17. The oomycete response gene LURP1 is required for defense against Hyaloperonospora parasitica in Arabidopsis thaliana. C Knoth T Eulgem, The Plant Journal 2008 55 53 64 10.1111/j.1365-313X.2008.03486.x 18346188
18. NPR1, all things considered. X Dong, Curr Opin Plant Biol 2004 7 5 547 552 10.1016/j.pbi.2004.07.005 15337097
19. Regulation of the Arabidopsis defense transcriptome. T Eulgem, Trends Plant Sci 2005 10 2 71 78 10.1016/j.tplants.2004.12.006 15708344
20. The transcriptome of Arabidopsis thaliana during systemic acquired resistance. K Maleck A Levine T Eulgem A Morgan J Schmid KA Lawton JL Dangl RA Dietrich, Nat Genet 2000 26 4 403 410 10.1038/82521 11101835
21. Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. W Chen NJ Provart J Glazebrook F Katagiri HS Chang T Eulgem F Mauch S Luan G Zou SA Whitham PR Budworth Y Tao Z Xie X Chen S Lam JA Kreps JF Harper A Si-Ammour B Mauch-Mani M Heinlein K Kobayashi T Hohn JL Dangl X Wang T Zhu, Plant Cell 2002 14 3 559 574 11910004 10.1105/tpc.010410
22. Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. SL Harmer JB Hogenesch M Straume H-S Chang B Han T Zhu X Wang JA Kreps SA Kay, Science 2000 290 2110 2113 10.1126/science.290.5499.2110 11118138
23. Induction of protein secretory pathway is required for systemic acquired resistance. D Wang ND Weaver M Kesarwani X Dong, Science 2005 308 5724 1036 1040 10.1126/science.1108791 15890886
24. EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels. T Eulgem T Tsuchiya X Wang A Cuzick B Beasley M Toer JM McDowell E Holub T Zhu JL Dangl, The Plant Journal 2007 49 829 839 10.1111/j.1365-313X.2006.02999.x 17253987
25. The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. K Toufighi SM Brady R Austin E Ly NJ Provart, Plant J 2005 43 1 153 163 10.1111/j.1365-313X.2005.02437.x 15960624
26. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. JD Hughes PW Estep S Tavazoie GM Church, J Mol Biol 2000 296 5 1205 1214 10.1006/jmbi.2000. 3519 10698627
27. Activation of pepper basic PR-1 gene promoter during defense signaling to pathogen, abiotic and environmental stresses. JK Hong SC Lee BK Hwang, Gene 2005 356 169 180 10.1016/j.gene.2005.04.030 16005163
28. Identification and functional expression of the pepper pathogen-induced gene, CAPIP2, involved in disease resistance and drought and salt stress tolerance. SC Lee SH Kim SH An SY Yi BK Hwang, Plant Mol Biol 2006 62 (1-2) 151 164 10.1007/s11103-006-9010-5 16900319
29. Role of salicylic acid and NIM1/NPR1 in race-specific resistance in arabidopsis. GJ Rairdan TP Delaney, Genetics 2002 161 2 803 811 12072475
30. Evaluation and Comparison of the GUS, LUC and GFP Reporter Systems for Gene Expression Studies in Plants. NCA de Ruijter J Verhees W van Leeuwen AR van der Krol, Plant Bio 2003 5 103 115 10.1055/s-2003-40722
31. A central role of salicylic acid in plant disease resistance. T Delaney S Uknes B Vernooij L Friedrich K Weymann D Negrotto T Gaffney M Gut-Rella H Kessman E Ward J Ryals, Science 1994 266 1247 1250 10.1126/science.266.5188.1247 17810266
32. A global view of defense gene expression regulation a highly interconnected signaling network. F Katagiri, Current Opinion in Plant Biology 2004 7 506 511 10.1016/j.pbi.2004.07.013 15337092
33. Functional analysis of regulatory sequences controlling PR-1 gene expression in Arabidopsis. E Lebel P Heifetz L Thorne S Uknes J Ryals E Ward, Plant J 1998 16 2 223 233 10.1046/j.1365-313x.1998.00288.x 9839467
34. Interaction of elicitor-induced DNA-binding proteins with elicitor response elements in the promoters of parsley PR1 genes. PJ Rushton J Tovar Torres M Parniske P Wernert K Hahlbrock IE Somssich, The EMBO Journal 1996 15 20 5690 5700 8896462
35. Bacterial disease resistance in Arabidopsis through flagellin perception. C Zipfel S Robatzek L Navarro EJ Oakeley JD Jones G Felix T Boller, Nature 2004 428 6984 764 767 10.1038/nature02485 15085136
36. A Genomic Approach to Identify Regulatory Nodes in the Transcriptional Network of Systemic Acquited Resistance in Plants. D Wang N Amornsiripanitch X Dong, PLoS Pathog 2006 2 11 e123 17096590 10.1371/journal.ppat.0020123
37. Vascular-specific expression of the bean GRP 1.8 gene is negatively regulated. B Keller C Baumgartner, Plant Cell 1991 3 10 1051 1061 1821759 10.1105/tpc.3.10.1051
38. A negatively acting DNA sequence element mediates phytochrome-directed repression of phyA gene transcription. WB Bruce XW Deng PH Quail, Embo J 1991 10 10 3015 3024 1915276
39. phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation. JM Tepperman YS Hwang PH Quail, Plant J 2006 48 5 728 742 10.1111/j.1365-313X.2006.02914.x 17076805
40. Genome wide analysis of Arabidopsis core promoters. C Molina E Grotewold, BMC Genomics 2005 6 15733318
41. Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. TP Michael TC Mockler G Breton C McEntee A Byer JD Trout SP Hazen R Shen HD Priest CM Sullivan SA Givan M Yanovsky F Hong SA Kay J Chory, PLoS Genet 2008 4 2 e14 18248097 10.1371/journal.pgen.0040014
42. Seduced by the dark side: integrating molecular and ecological perspectives on the influence of light on plant defence against pests and pathogens. MR Roberts ND Paul, New Phytol 2006 170 4 677 699 10.1111/j.1469-8137.2006.01707.x 16684231
43. Arabidopsis mutants simulating disease resistance response. RA Dietrich TP Delaney SJ Uknes EJ Ward JA Ryals JL Dangl, Cell 1994 77 565 578 10.1016/0092-8674(94)90218-6 8187176
44. Death Don't Have No Mercy: cell death programs in plant-microbe interactions. JL Dangl RA Dietrich MH Richberg, Plant Cell 1996 8 1793 1807 12239362 10.1105/tpc.8.10.1793
45. Functions of the respiratory burst oxidase in biotic interactions, abiotic stress and development. MA Torres JL Dangl, Curr Opin Plant Biol 2005 8 4 397 403 10.1016/j.pbi.2005.05.014 15939662
46. Elicitor-stimulated ion fluxes and reactive oxygen species from the oxidative burst signal defense gene activation and phytoalexin synthesis in parsley. T Jabs C Colling M Tschöpe K Hahlbrock D Scheel, Proc Natl Acad Sci USA 1997 94 4800 4805 9114072 10.1073/pnas.94.9.4800
47. Salicylic acid potentiates an agonist-dependent gain control that amplifies pathogen signals in the activation of defense mechanisms. K Shirasu H Nakajima VK Rajasekhar RA Dixon CJ Lamb, Plant Cell 1997 9 261 270 9061956 10.1105/tpc.9.2.261
48. Signalling crosstalk in plants: emerging issues. JE Taylor MR McAinsh, J Exp Bot 2004 55 395 147 149 10.1093/jxb/erh060 14673021
49. Downy mildew (Peronospora parasitica) resistance genes in Arabidopsis vary in functional requirements for NDR1, EDS1, NPR1, and Salicylic Acid accumulation. JM McDowell A Cuzick C Can J Beynon JL Dangl EB Holub, Plant J 2000 22 523 530 10.1046/j.1365-313x.2000.00771.x 10886772
50. A "Whirly" transcription factor is required for salicylic acid-dependent disease resistance in Arabidopsis. D Desveaux R Subramaniam C Despres JN Mess C Levesque PR Fobert JL Dangl N Brisson, Dev Cell 2004 6 2 229 240 10.1016/S1534-5807(04)00028-0 14960277
51. Transactivation properties of parsley proline-rich bZIP transcription factors. M Sprenger-Haussels B Weisshaar, Plant J 2000 22 1 1 8 10.1046/j.1365-313x.2000.00687.x 10792815
52. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. SC Popescu GV Popescu S Bachan Z Zhang M Seay M Gerstein M Snyder SP Dinesh-Kumar, Proc Natl Acad Sci USA 2007 104 11 4730 4735 17360592 10.1073/pnas.0611615104
53. Molecular cloning: A laboratory manual. J Sambrook S Fritsch T Maniatis, Cold Spring Harbor: Cold Spring HarborPress 1989 2 2574319
54. Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. SJ Clough AF Bent, Plant J 1998 16 735 743 10.1046/j.1365-313x.1998.00343.x 10069079
55. Genevestigator V3: a reference expression database for the meta-analysis of transcriptomes. T Hruz O Laule G Szabo F Wessendorp S Bleuler L Oertle P Widmayer W Gruissem P Zimmermann, Advances in Bioinformatics 2008 420747
56. Genome-wide gene expression analysis reveals a critical role for CRYPTOCHROME1 in the response of Arabidopsis to high irradiance. T Kleine P Kindgren C Benedict L Hendrickson A Strand, Plant Physiol 2007 144 3 1391 1406 17478635 10.1104/pp.107.098293