Methods for analyzing deep sequencing expression data: Constructing the human and mouse promoterome with deepCAGE data

Genome Biology

Volumn 10, Issue 7, 2009, Pages

  Balwierz, Piotr J ^a   Carninci, Piero ^b   Daub, Carsten O ^b   Kawai, Jun ^b   Hayashizaki, Yoshihide ^b   Van Belle, Werner ^c   Beisel, Christian ^c   van Nimwegen, Erik ^a  

^a UNIVERSITY OF BASEL   (Switzerland)

^b RIKEN YOKOHAMA INSTITUTE   (Japan)

^c ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ANALYTIC METHOD; ARTICLE; CPG ISLAND; DATA ANALYSIS; DEEP SEQUENCING EXPRESSION; GENE CLUSTER; GENE CONSTRUCT; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE MAPPING; GENE SEQUENCE; HUMAN; MOUSE; NOISE MEASUREMENT; NOISE MODEL; NONHUMAN; PROBABILITY; PROMOTER REGION; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE TAGGED SITE; STATISTICAL ANALYSIS; STATISTICAL MODEL; TRANSCRIPTION INITIATION SITE; ALGORITHM; ANIMAL; BIOLOGY; CELL LINE; CLUSTER ANALYSIS; DNA BASE COMPOSITION; DNA MICROARRAY; DNA SEQUENCE; GENETIC ASSOCIATION; GENETICS; METHODOLOGY; REPRODUCIBILITY; STATISTICS;

ALGORITHMS; ANIMALS; BASE COMPOSITION; CELL LINE; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; CPG ISLANDS; GENE EXPRESSION PROFILING; GENOME-WIDE ASSOCIATION STUDY; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROMOTER REGIONS, GENETIC; REPRODUCIBILITY OF RESULTS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION INITIATION SITE;

EID: 68849123047     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2009-10-7-r79     Document Type: Article

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