-
1
-
-
0023468859
-
Evolution of the genetic apparatus: A review
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
L.E. Orgel, Evolution of the genetic apparatus: a review, in: Cold Spring Harbor Symposia on Quantitate Biology, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1987, pp. 9-16.
-
(1987)
Cold Spring Harbor Symposia on Quantitate Biology
, pp. 9-16
-
-
Orgel, L.E.1
-
2
-
-
3042709433
-
Prebiotic chemistry and the origin of the RNA world
-
Orgel L.E. Prebiotic chemistry and the origin of the RNA world. Crit. Rev. Biochem. Mol. Biol. 39 (2004) 99-123
-
(2004)
Crit. Rev. Biochem. Mol. Biol.
, vol.39
, pp. 99-123
-
-
Orgel, L.E.1
-
3
-
-
0025008851
-
Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet
-
Piccirilli J.A., Krauch T., Moroney S.E., and Benner S.A. Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet. Nature 343 (1990) 33-37
-
(1990)
Nature
, vol.343
, pp. 33-37
-
-
Piccirilli, J.A.1
Krauch, T.2
Moroney, S.E.3
Benner, S.A.4
-
4
-
-
0024325247
-
Enzymatic incorporation of a new base pair into DNA and RNA
-
Switzer C., Moroney S.E., and Benner S.A. Enzymatic incorporation of a new base pair into DNA and RNA. J. Am. Chem. Soc. 111 (1989) 8322-8323
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 8322-8323
-
-
Switzer, C.1
Moroney, S.E.2
Benner, S.A.3
-
5
-
-
0003075565
-
On the problems of evolution and biochemical information transfer
-
Kasha M., and Pullman B. (Eds), Academic Press, New York
-
Rich A. On the problems of evolution and biochemical information transfer. In: Kasha M., and Pullman B. (Eds). Horizons in Biochemistry (1962), Academic Press, New York
-
(1962)
Horizons in Biochemistry
-
-
Rich, A.1
-
6
-
-
1942484534
-
Intrinsic selectivity in some prebiotic reactions of urazole with sugars
-
Hoover R.B., Peape R.R., and Rozanov A.Y. (Eds), CA: Bellingham, SPIE, San Diego
-
Kolb V.M., and Colloton P.A. Intrinsic selectivity in some prebiotic reactions of urazole with sugars. In: Hoover R.B., Peape R.R., and Rozanov A.Y. (Eds). Instrument Methods and Mission for Astrobiology (2003), CA: Bellingham, SPIE, San Diego
-
(2003)
Instrument Methods and Mission for Astrobiology
-
-
Kolb, V.M.1
Colloton, P.A.2
-
7
-
-
0028234664
-
Alternative bases in the RNA world: the prebiotic synthesis of urazole and its ribosides
-
Kolb V.M., Dworkin J.P., and Miller S.L. Alternative bases in the RNA world: the prebiotic synthesis of urazole and its ribosides. J. Mol. Evol. 38 (1994) 549-557
-
(1994)
J. Mol. Evol.
, vol.38
, pp. 549-557
-
-
Kolb, V.M.1
Dworkin, J.P.2
Miller, S.L.3
-
8
-
-
0032493439
-
The stability of the RNA bases: implications for the origin of life
-
Levy M., and Miller S.L. The stability of the RNA bases: implications for the origin of life. Proc. Natl. Acad. Sci. USA 95 (1998) 7933-7938
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 7933-7938
-
-
Levy, M.1
Miller, S.L.2
-
9
-
-
0020769933
-
The primitive code and repeats of base oligomers as the primordial protein-encoding sequence
-
Ohno S., and Epplen J.T. The primitive code and repeats of base oligomers as the primordial protein-encoding sequence. Proc. Natl. Acad. Sci. USA 80 (1983) 3391-3395
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 3391-3395
-
-
Ohno, S.1
Epplen, J.T.2
-
10
-
-
0029311699
-
The prebiotic role of adenine: a critical analysis
-
Shapiro R. The prebiotic role of adenine: a critical analysis. Orig. Life Evol. Biosph. 25 (1995) 83-98
-
(1995)
Orig. Life Evol. Biosph.
, vol.25
, pp. 83-98
-
-
Shapiro, R.1
-
11
-
-
0033551161
-
Prebiotic cytosine synthesis: a critical analysis and implications for the origin of life
-
Shapiro R. Prebiotic cytosine synthesis: a critical analysis and implications for the origin of life. Proc. Natl. Acad. Sci. USA 96 (1999) 4396-4401
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 4396-4401
-
-
Shapiro, R.1
-
12
-
-
68849123762
-
Mars: The search for life
-
Madrid, Spain
-
S. Randall, V.M. Kolb, Mars: the search for life, in: Proceedings of the III European Workshop on Exo-Astrobiology, Madrid, Spain, 2003, pp. 257-258.
-
(2003)
Proceedings of the III European Workshop on Exo-Astrobiology
, pp. 257-258
-
-
Randall, S.1
Kolb, V.M.2
-
13
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura K., and Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10 (1993) 512-526
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
14
-
-
33745744852
-
A novel algebraic structure of the genetic code over the galois field of four DNA bases
-
Sanchez R., and Grau R. A novel algebraic structure of the genetic code over the galois field of four DNA bases. Acta Biotheor. 54 (2006) 27-42
-
(2006)
Acta Biotheor.
, vol.54
, pp. 27-42
-
-
Sanchez, R.1
Grau, R.2
-
15
-
-
33745852604
-
A novel Lie algebra of the genetic code over the Galois field of four DNA bases
-
Sanchez R., Grau R., and Morgado E. A novel Lie algebra of the genetic code over the Galois field of four DNA bases. Math. Biosci. 202 (2006) 156-174
-
(2006)
Math. Biosci.
, vol.202
, pp. 156-174
-
-
Sanchez, R.1
Grau, R.2
Morgado, E.3
-
16
-
-
26444542847
-
Gene algebra from a genetic code algebraic structure
-
Sanchez R., Morgado E., and Grau R. Gene algebra from a genetic code algebraic structure. J. Math. Biol. 51 (2005) 431-457
-
(2005)
J. Math. Biol.
, vol.51
, pp. 431-457
-
-
Sanchez, R.1
Morgado, E.2
Grau, R.3
-
17
-
-
0022376704
-
Dating of human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M., Kishino H., and Yano T. Dating of human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22 (1985) 160-174
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
19
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16 (1980) 111-120
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
20
-
-
0026711010
-
Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C content biases
-
Tamura K. Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C content biases. Mol. Biol. Evol. 9 (1992) 678-687
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 678-687
-
-
Tamura, K.1
-
21
-
-
0015219691
-
Fitting discrete probability distributions to evolutionary events
-
Uzzell T., and Corbin K.W. Fitting discrete probability distributions to evolutionary events. Science 172 (1971) 1089-1096
-
(1971)
Science
, vol.172
, pp. 1089-1096
-
-
Uzzell, T.1
Corbin, K.W.2
-
22
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M., and Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3 (1986) 418-426
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
23
-
-
0025061094
-
Limitations of the evolutionary parsimony method of phylogenetic analysis
-
Jin L., and Nei M. Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol. Biol. Evol. 7 (1990) 82-102
-
(1990)
Mol. Biol. Evol.
, vol.7
, pp. 82-102
-
-
Jin, L.1
Nei, M.2
-
25
-
-
0013936167
-
Codon-anticodon pairing: the wobble hypothesis
-
Crick F.H.C. Codon-anticodon pairing: the wobble hypothesis. J. Mol. Biol. 19 (1966) 548-555
-
(1966)
J. Mol. Biol.
, vol.19
, pp. 548-555
-
-
Crick, F.H.C.1
-
26
-
-
0002912392
-
Metabolism and gene expression
-
Strathern J., et al. (Ed), Cold Spring Harbor Laboratory, New York
-
Guthrie C., and Abelson J. Metabolism and gene expression. In: Strathern J., et al. (Ed). The Molecular Biology of the Yeast Saccharomyces (1982), Cold Spring Harbor Laboratory, New York 487-528
-
(1982)
The Molecular Biology of the Yeast Saccharomyces
, pp. 487-528
-
-
Guthrie, C.1
Abelson, J.2
-
27
-
-
68849130512
-
The transfer RNA genes in Oryza sativa L. ssp. Indica
-
Xiyin W., Xiaoli S., and Bailin H. The transfer RNA genes in Oryza sativa L. ssp. Indica. Sci. China C 45 (2006) 504-511
-
(2006)
Sci. China C
, vol.45
, pp. 504-511
-
-
Xiyin, W.1
Xiaoli, S.2
Bailin, H.3
-
28
-
-
68849094470
-
Collected works
-
Oxford, North-Holland, Amsterdam, 1976
-
N. Bohr, L. Rosenfeld, J.R. Nielsen, Niels Bohr, Collected works. The Correspondence Principle (1918-1923), Oxford, North-Holland, Amsterdam, 1976.
-
(1918)
The Correspondence Principle
-
-
Bohr, N.1
Rosenfeld, L.2
Nielsen, J.R.3
Bohr, N.4
-
29
-
-
0014378880
-
The origin of the genetic code
-
Crick F.H.C. The origin of the genetic code. J. Mol. Biol. 38 (1968) 367-379
-
(1968)
J. Mol. Biol.
, vol.38
, pp. 367-379
-
-
Crick, F.H.C.1
-
30
-
-
0014581827
-
The genetic code and error transmission
-
Alff-Steinberger C. The genetic code and error transmission. Proc. Natl. Acad. Sci. USA 64 (1969) 584-591
-
(1969)
Proc. Natl. Acad. Sci. USA
, vol.64
, pp. 584-591
-
-
Alff-Steinberger, C.1
-
31
-
-
0024722501
-
Errors and alternatives in reading the universal genetic code
-
Parker J. Errors and alternatives in reading the universal genetic code. Microbiol. Rev. 53 (1989) 273-298
-
(1989)
Microbiol. Rev.
, vol.53
, pp. 273-298
-
-
Parker, J.1
-
32
-
-
0013824051
-
On the evolution of the genetic code
-
Woese C.R. On the evolution of the genetic code. Proc. Natl. Acad. Sci. USA 54 (1965) 1546-1552
-
(1965)
Proc. Natl. Acad. Sci. USA
, vol.54
, pp. 1546-1552
-
-
Woese, C.R.1
-
33
-
-
0013592859
-
Role of minimization of chemical distances between amino acids in the evolution of the genetic code
-
Wong J.T. Role of minimization of chemical distances between amino acids in the evolution of the genetic code. Proc. Natl. Acad. Sci. USA 77 (1980) 1083-1086
-
(1980)
Proc. Natl. Acad. Sci. USA
, vol.77
, pp. 1083-1086
-
-
Wong, J.T.1
-
36
-
-
0037022287
-
The origin of the eukaryotic cell: a genomic investigation
-
Hartman H., and Fedorov A. The origin of the eukaryotic cell: a genomic investigation. Proc. Natl. Acad. Sci. USA 99 (2002) 1420-1425
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1420-1425
-
-
Hartman, H.1
Fedorov, A.2
-
37
-
-
0017749245
-
The concept of cellular evolution
-
Woese C.R., and Fox G.E. The concept of cellular evolution. J. Mol. Evol. 10 (1977) 1-6
-
(1977)
J. Mol. Evol.
, vol.10
, pp. 1-6
-
-
Woese, C.R.1
Fox, G.E.2
-
38
-
-
0026520507
-
What is the optimum size for the genetic alphabet?
-
Szathmary E. What is the optimum size for the genetic alphabet?. Proc. Natl. Acad. Sci. USA 89 (1992) 2614-2618
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 2614-2618
-
-
Szathmary, E.1
-
39
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
40
-
-
0020480512
-
Recognition of protein coding regions in DNA sequences
-
Fickett J.W. Recognition of protein coding regions in DNA sequences. Nucleic Acids Res. 10 (1982) 5303-5318
-
(1982)
Nucleic Acids Res.
, vol.10
, pp. 5303-5318
-
-
Fickett, J.W.1
-
41
-
-
0031010292
-
Prediction of probable genes by Fourier analysis of genomic sequences
-
Tiwari S., Ramachandran S., Bhattacharya A., Bhattacharya S., and Ramaswamy R. Prediction of probable genes by Fourier analysis of genomic sequences. CABIOS 13 (1997) 263-270
-
(1997)
CABIOS
, vol.13
, pp. 263-270
-
-
Tiwari, S.1
Ramachandran, S.2
Bhattacharya, A.3
Bhattacharya, S.4
Ramaswamy, R.5
-
42
-
-
0025833642
-
Periodicity in DNA coding sequences: implications in gene evolution
-
Tsonis A.A., Elsner J.B., and Tsonis P.A. Periodicity in DNA coding sequences: implications in gene evolution. J. Theor. Biol. 151 (1991) 323-331
-
(1991)
J. Theor. Biol.
, vol.151
, pp. 323-331
-
-
Tsonis, A.A.1
Elsner, J.B.2
Tsonis, P.A.3
-
43
-
-
0030468869
-
Pattern and timing of evolutionary divergences among hominoids based on analyses of complete mtDNAs
-
Arnason U., Gullberg A., Janke A., and Xu X. Pattern and timing of evolutionary divergences among hominoids based on analyses of complete mtDNAs. J. Mol. Evol. 43 (1996) 650-661
-
(1996)
J. Mol. Evol.
, vol.43
, pp. 650-661
-
-
Arnason, U.1
Gullberg, A.2
Janke, A.3
Xu, X.4
-
44
-
-
24644435903
-
The evolution of noncoding DNA: how much junk how much func?
-
Castillo-Davis C.I. The evolution of noncoding DNA: how much junk how much func?. Trends Genet. 21 (2005) 533-536
-
(2005)
Trends Genet.
, vol.21
, pp. 533-536
-
-
Castillo-Davis, C.I.1
-
45
-
-
18744395183
-
Numerous potentially functional but non-genic conserved sequences on human chromosome 21
-
Dermitzakis E.T. Numerous potentially functional but non-genic conserved sequences on human chromosome 21. Nature 420 (2002) 578-582
-
(2002)
Nature
, vol.420
, pp. 578-582
-
-
Dermitzakis, E.T.1
-
46
-
-
2442695243
-
Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment
-
Dermitzakis E.T., Kirkness E., Schwarz S., Birney E., Reymond A., and Antonarakis S.E. Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment. Genome Res. 14 (2004) 852-859
-
(2004)
Genome Res.
, vol.14
, pp. 852-859
-
-
Dermitzakis, E.T.1
Kirkness, E.2
Schwarz, S.3
Birney, E.4
Reymond, A.5
Antonarakis, S.E.6
-
47
-
-
0242662461
-
Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs)
-
Dermitzakis E.T., Reymond A., Scamuffa N., Ucla C., Kirkness E., Rossier C., and Antonarakis S.E. Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs). Science 302 (2003) 1033-1035
-
(2003)
Science
, vol.302
, pp. 1033-1035
-
-
Dermitzakis, E.T.1
Reymond, A.2
Scamuffa, N.3
Ucla, C.4
Kirkness, E.5
Rossier, C.6
Antonarakis, S.E.7
-
48
-
-
3242674492
-
Unexpected conserved non-coding DNA blocks in mammals
-
Gaffney D.J., and Keightley P.D. Unexpected conserved non-coding DNA blocks in mammals. Trends Genet. 20 (2004) 332-337
-
(2004)
Trends Genet.
, vol.20
, pp. 332-337
-
-
Gaffney, D.J.1
Keightley, P.D.2
-
49
-
-
33750737061
-
Accelerated evolution of conserved noncoding sequences in humans
-
Prabhakar S., Noonan J.P., Paabo S., and Rubin E.M. Accelerated evolution of conserved noncoding sequences in humans. Science 314 (2006) 786
-
(2006)
Science
, vol.314
, pp. 786
-
-
Prabhakar, S.1
Noonan, J.P.2
Paabo, S.3
Rubin, E.M.4
-
51
-
-
22344451035
-
MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution
-
Cai J.J., Smith D.K., Xia X., and Yuen K.-y. MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution. BMC Bioinformatics 6 (2005)
-
(2005)
BMC Bioinformatics
, vol.6
-
-
Cai, J.J.1
Smith, D.K.2
Xia, X.3
Yuen, K.-y.4
-
52
-
-
0026660413
-
A simple method for estimating and testing minimum-evolution trees
-
Rzhetsky A., and Nei M. A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9 (1992) 945-967
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 945-967
-
-
Rzhetsky, A.1
Nei, M.2
-
55
-
-
0036943052
-
Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle
-
Desper R., and Gascuel O. Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle. J. Comput. Biol. 9 (2002) 687-705
-
(2002)
J. Comput. Biol.
, vol.9
, pp. 687-705
-
-
Desper, R.1
Gascuel, O.2
-
56
-
-
1542510099
-
Theoretical foundation of the balanced minimum evolution method of phylogenetic inference and its relationship to weighted least-squares tree fitting
-
Desper R., and Gascuel O. Theoretical foundation of the balanced minimum evolution method of phylogenetic inference and its relationship to weighted least-squares tree fitting. Mol. Biol. Evol. 21 (2004) 587-598
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 587-598
-
-
Desper, R.1
Gascuel, O.2
-
58
-
-
0029589301
-
On the origin and evolution of the genetic code
-
Jiménez-Sánchez A. On the origin and evolution of the genetic code. J. Mol. Evol. 41 (1995) 712-716
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 712-716
-
-
Jiménez-Sánchez, A.1
-
59
-
-
0028906228
-
Speculations on the origin of the genetic code
-
Hartman H. Speculations on the origin of the genetic code. J. Mol. Evol. 40 (1995) 541-544
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 541-544
-
-
Hartman, H.1
-
60
-
-
0036221257
-
A novel theory on the origin of the genetic code: A GNC-SNS hypothesis
-
Ikehara K., Omori Y., Arai R., and Hirose A. A novel theory on the origin of the genetic code: A GNC-SNS hypothesis. J. Mol. Evol. 54 (2002) 530-538
-
(2002)
J. Mol. Evol.
, vol.54
, pp. 530-538
-
-
Ikehara, K.1
Omori, Y.2
Arai, R.3
Hirose, A.4
-
61
-
-
0242332191
-
A four-base paired genetic helix with expanded size
-
Liu H., Gao J., Lynch S.R., Saito Y.D., Maynard L., and Kool E.T. A four-base paired genetic helix with expanded size. Science 302 (2003) 868-871
-
(2003)
Science
, vol.302
, pp. 868-871
-
-
Liu, H.1
Gao, J.2
Lynch, S.R.3
Saito, Y.D.4
Maynard, L.5
Kool, E.T.6
-
62
-
-
33751005291
-
Functioning genetic system with expanded size base pairs: solution structure of the 8-base xDNA double helix
-
Lynch S.R., Liu H., Gao J., Kool E.T., and Designed T.a. Functioning genetic system with expanded size base pairs: solution structure of the 8-base xDNA double helix. J. Am. Chem. Soc. 128 (2006) 14704-14711
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 14704-14711
-
-
Lynch, S.R.1
Liu, H.2
Gao, J.3
Kool, E.T.4
Designed, T.a.5
-
63
-
-
0030807655
-
BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
-
Gascuel O. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol. Biol. Evol. 14 (1997) 685-695
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 685-695
-
-
Gascuel, O.1
|