Contribution of studies on suppressive soils to the identification of bacterial biocontrol agents and to the knowledge of their modes of action

Plant-Associated Bacteria

Volumn , Issue , 2006, Pages 231-267

  Lemanceau, Philippe ^a   Maurhofer, Monika ^b   Défago, Geneviève ^b  

^a UNIVERSITÉ DE BOURGOGNE   (France)

^b ETH ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 68649095009     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-4020-4538-7_7     Document Type: Chapter

References (228)

1. Alabouvette, C. (1986). Fusarium wilt suppressive soil from the Châteaurenard region: A review of a 10-year study. Agronomie, 6, 273-284.
2. Alabouvette, C., Rouxel, F., & Louvet, J. (1977). Recherches sur la résistance des sols aux maladies. III. Effets du rayonnement sur la microflore d'un sol et sa résistance à la fusariose vasculaire du melon. Annales de Phytopathologie, 9, 467-471.
3. Alabouvette, C., Rouxel, F., & Louvet, J. (1980). Recherches sur la résistance des sols aux maladies. VI. Mise en évidence de la spécificité de la résistance d'un sol vis-à-vis des fusarioses. Annales de Phytopathologie, 12, 11-19.
4. Alabouvette, C., Couteaudier, Y., & Louvet, J. (1982). Comparaison de la réceptivité de différents sols et substrats de culture aux fusarioses vasculaires. Agronomie, 2, 1-6.
5. Alabouvette, C., Couteaudier, Y., & Louvet, J. (1984). Recherches sur la résistance des sols aux maladies. IX. Dynamique des populations de Fusarium spp. et de Fusarium oxysporum f.sp. melonis dans un sol résistant et dans un sol sensible aux fusarioses vasculaires. Agronomie, 4, 729-733.
6. Alabouvette, C., Couteaudier, Y., & Louvet, J. (1985a). Recherches sur la résistance des sols aux maladies. XI. Etude comparative du comportement des Fusarium spp. dans un sol résistant et un sol sensible aux fusarioses vasculaires enrichis en glucose. Agronomie, 5, 63-68.
7. Alabouvette, C., Couteaudier, Y., & Louvet, J. (1985b). Recherches sur la résistance des sols aux maladies. XII. Activité respiratoire dans un sol résistant et un sol sensible aux fusarioses vasculaires enrichis en glucose. Agronomie, 5, 69-72.
8. Alabouvette, C., Höper, C., Lemanceau, P., & Steinberg, C. (1996). Soil suppressiveness to diseases induced by soilborne plant pathogens. In G. Stotzky & J. M. Bollag (Eds.), Soil Biochemistry (pp. 371-413). New York: Marcel Dekker Inc.
9. Alabouvette, C., De La Broise, D., Lemanceau, P., Couteaudier, Y., & Louvet, J. (1987). Utilisation de souches non pathogènes de Fusarium pour lutter contre les fusarioses : Situation actuelle dans la pratique. OEPP/EPPO, 17, 665-674.
10. Alabouvette, C., Raaijmakers, J., de Boer, W., Notz, R., Défago, G, Steinberg, C., & Lemanceau, P. Concepts and methods to assess phytosanitary quality of soils. In J. Bloem, D. W. Hopkins & A. Benedetti (Eds.), Plant-microbe interactions and soil quality. Wallingford: CABI Publishing, in press.
11. Armstrong, G. M., & Armstrong, J. K. (1981). Formae speciales and races of Fusarium oxysporum causing wilt diseases. In P. E. Nelson, T. A. Toussoun & R. J. Cook (Eds), Fusarium: Diseases, Biology, and Taxonomy. Pennsylvania State University Press.
12. Asher, M. J. C., & Shipton, P. J. (1981). Biology and Control of Take-all. New York: Academic Press.
13. Atkinson, G. F. (1982). Some diseases of cotton. Alabama Agricultural Experimental Station Bulletin, 41, 19-29.
14. Baehler, E., Bottiglieri, M., Pechy-Tarr, M., Maurhofer, M. & Keel, C. (2005). Use of green fluorescent protein-based reporters to monitor balanced production of antifungal compounds in the biocontrol agent Pseudomonas fluorescens CHA0. Journal of Applied Microbiology, 99, 24-38.
15. Baker, R. (1992). Biological control of diseases of crops grown in covered and environmentally controlled structures. In E. S. Tjamos et al. (Eds.), Biological Control of Plant Diseases. (pp. 231-241). New York: Plenum Press.
16. Baker, K. F., & Cook, R. J. (1974). Biological control of plant pathogens. San Francisco: Freeman.
17. Bakker, P. A. H. M., Van Peer, R., & Schippers, B. (1991). Suppression of soil-borne plant pathogens by fluorescent pseudomonads: mechanisms and prospects. In A. B. R. Beemster, G. J. Boeller, M. Gerlagh, M. A. Ruissen, B. Schippers & A. Tempei (Eds.), Biotic interactions and soil-borne diseases (pp. 217-230). Amsterdam: Elsevier.
18. Bangera, M. G., & Thomashow, L. S. (1999). Identification and characterization of gene cluster for synthesis of the polyketide antibiotic 2, 4-diacetylphloroglucinol from Pseudomonas fluorescens Q2-87. Journal of Bacteriology, 181, 3155-3163.
19. Bankhead, S. B., Landa, B. B., Lutton, E., Weller, D. M., & McSpadden Gardener, B. B. (2004) Minimal changes in rhizobacterial population structure following root colonization by wild type and transgenic biocontrol strains. FEMS Microbiology Ecology, 49, 307-318.
20. Berling, C. H., Défago, G, & Kern, H. (1984). Population-dynamics of Thielaviopsis basicola in soils conducive and suppressive to black root rot disease. Phytopathology, 74, 867-867.
21. Beyeler, M., Keel, C., Michaux, P., & Haas, D. (1999). Enhanced production of indole-3-acetic acid by a genetically modified strain of Pseudomonas fluorescens CHA0 affects root growth of cucumber but does not improve protection of the plant against Pythium root rot. FEMS Microbiology Ecology, 28, 225-233.
22. Blankenfeldt, W., Kuzin, A. P., Skarina, T., Korniyenko, Y., Tong, L., Bayer, P., Janning, P., Thomashow, L. S., & Mavrodi, D. V. (2004). Structure and function of the phenazine biosynthetic protein PhzF from Pseudomonas fluorescens. Proceedings of the National Academy of Sciences of the United States, 101, 16431-16436.
23. Bloemberg, G. V., & Lugtenberg, B. J. J. (2001). Molecular basis of plant growth promotion and biocontrol by rhizobacteria. Current Opinion in Plant Biology, 4, 343-350.
24. Bonsal, R. F., Weller, D. M., & Thomashow, L. S. (1997). Quantification of 2, 4-diacetylphloroglucinol produced by fluorescent Pseudomonas spp. in vitro and in the rhizosphere of wheat. Applied and Environmental Microbiology, 65, 951-955.
25. Bouhot, D. (1979). Estimation of inoculum density and inoculum potential: Techniques and their values for disease prediction. In B. Schippers & W. Gams (Eds.), Soil-borne plant pathogens (pp. 21-34). London: Academic Press.
26. Brisbane, P. G., Janik, L. J., Tate, M. E., & Warren, R. F. O. (1987). Revised structure for the phenazine antibiotic from Pseudomonas fluorescens 2-79 (NRRL B-15132). Antimicrobial Agents and Chemotherapy, 31, 1967-1971.
27. Carroll, H., Moënne-Loccoz, Y., Dowling, D. N., & O'Gara, F. (1995). Mutational disruption of the biosynthesis gene coding for the antifungal metabolite 2, 4-diacetylphlroglucinol does not influence the ecological fitness of Pseudomonas fluorescens F113 in the rhizosphere of sugarbeets. Applied and Environmental Microbiology, 61, 3002-3007.
28. Chin-A-Woeng, T. F. C., Thomas-Oates, J.E., Lugetnberg, B. J. J., & Bloemberg, G. V. (2001). Introduction of phzH gene of Pseudomonas chlororaphis PCL1391 extends the range of biocontrol ability of phenazine-1-carboxylic acid-producing Pseudomonas spp. strains. Molecular Plant-Microbe Interactions, 14, 1006-1015.
29. Chin-A-Woeng, T. F. C., Bloemberg, G. V., & Lugtenberg, B. J. J. (2003). Phenazines and their role in biocontrol by Pseudomonas bacteria. New Phytologist, 157, 503-523.
30. Chin-A-Woeng, T. F. C., Bloemberg, G. V., van der Bij, A. J., van der Drift, K. M. G. F., Schripsema, J., Kroon, B., Scheffer, R. J., Keel, C., Bakker, P. A. H. M., Tichy, H. V., de Bruijn, F. J., Thomas- Oates, J. E., & Lugtenberg, B. J. J. (1998). Biocontrol by phenazine-1-carboxamide-producing Pseudomonas chlororaphis PCL1391 of tomato root rot caused by Fusarium oxysporum f. sp. radicis-lycopersici. Molecular Plant-Microbe Interactions, 11, 1069-1077.
31. Cook, R. J. (1981). The influence of rotation crops on take-all decline phenomenon. Phytopathology, 71, 189-192.
32. Cook, R. J., & Baker, K. F. (1983). The nature and practice of biological control of plant pathogens. St Paul: The American Phytopathological Society.
33. Cook, R. J., & Rovira, A. D. (1976). The role of bacteria in the biological control of Gaeumannomyces graminis by suppressive soils. Soil Biology and Biochemistry, 8, 269-273.
34. Cook, J. R., Thomashow, L. S., Weller, D. M., Fujimoto, D., Mazzola, M., Bangera, G., & Kim, D. S. (1995). Molecular mechanisms of defense by rhizobacteria against root disease. Proceedings of the National Academy of Science, U.S.A. 92, 4197-4201.
35. Couteaudier, Y., & Alabouvette, C. (1990a). Quantitative comparison of Fusarium oxysporum competitiveness in relation to carbon utilization. FEMS Microbiology Ecology, 74, 261-267.
36. Couteaudier, Y., & Alabouvette, C. (1990b). Survival and inoculum potential of conidia and chlamydospores of Fusarium oxysporum f.sp. lini in soil. Canadian Journal of Microbiology, 36, 551-556.
37. Cronin, D., Moënne-Loccoz, Y., Fenton, A., Dunne, C., Dowling, D. N. & O'Gara, F. (1997). Role of 2, 4-diacetylphloroglucinol in the interactions of the biocontrol pseudomonad strain F113 with the potato cyst nematode Globodera rostochiensis. Applied and Environmental Microbiology, 63, 1357-1361.
38. De Boer, M., Bom, P., Kindt, F., Keurentjes, J. J. B., van der Sluis, I., Van Loon, L. C., & Bakker, P. A. H. M. (2003). Control of Fusarium wilt of radish by combining Pseudomonas putida strains that have different disease-suppressive mechanisms. Phytopathology, 93, 626-632.
39. Défago, G., & Haas, D. (1990). Pseudomonads as antagonists of soilborne plant pathogens: modes of action and genetic analysis. In J. M. Bollag & G. Stotzky (Eds.), Soil Biochemistry (pp. 249-291). New York: Marcel Dekker Inc.
40. Défago, G, & Keel, C. (1995). Pseudomonads as biocontrol agents of diseases caused by soil-borne pathogens. In H. M. Hokkanen & J. M. Lynch (Eds.), Benefits and Risks of Introducing Biocontrol Agents (pp. 137-148). Cambridge: University Press.
41. Défago, G., Berling, C. H., Henggeler, S., Hungerbühler, W., Kern, H., Schleppi, P., Stutz, E. W., & Zürrer, M. (1987). Survie d'un Pseudomonas fluorescens dans le sol et protection du blé contre des maladies d'origine fongique. Sch Landw Fo., 26, 155-160.
42. De Souza, J. T., Weller, D. M., & Raaijmakers, J. M. (2003). Frequency, diversity, and activity of 2, 4- diacetylphloroglucinol-producing fluorescent Pseudomonas spp. in Dutch take-all decline soils. Phytopathology, 93, 54-63.
43. Dominiguez, J., Negrin, M. A., Rodriguez, C. M. (2001). Aggregate water-stability and soil solution properties in conducive and suppressive soils to Fusarium wilt of banana from Canary islands (Spain). Soil Biology and Biochemistry, 33, 449-455.
44. Duffy, B. (2000). Combination fo pencycuron and Pseudomonas fluorescens strain 2-79 for integrated control of Rhizoctonia root rot and take-all of spring wheat. Crop Protection, 19, 21-25.
45. Duffy, B. K., & Défago, G. (1997a). Zinc amendment improves the biocontrol of tomato crown and root rot by Pseudomonas fluorescens and represses the production of bacterial metabolites inhibitory to bacterial antibiotic biosynthesis. Phytopathology, 87, 1250-57.
46. Duffy, B. K., & Défago, G. (1997b). Environmental signals in biocontrol of tomato root disease by Pseudomonas fluorescens. Med. Fac. Landbouww. Uni. Gent, 62, 1015-1022.
47. Duffy, B. K., & Défago, G. (1999). Environmental factors modulating antibiotic and siderophore biosynthesis by Pseudomonas fluorescens biocontrol strains. Applied and Environmental Microbiology, 65, 2429-2438.
48. Duffy, B., Schouten, A., & Raaijmakers, J. M. (2003). Pathogen self-defense: mechanisms to counteract microbial antagonism. Annual Review of Phytopathology, 41, 501-538.
49. Duineveld, B. M., Kowalchuk, G. A., Keijzer, A., van Elsas, J. D., & van Veen, J. A. (2001). Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA. : Applied and Environmental Microbiology, 67, 172-178.
50. Duijff, B. J., Bakker, P. A. H. M., & Schippers, B. (1994). Suppression of Fusarium wilt of carnation by Pseudomonas putida WCS358 at different levels of disease incidence and iron availability. Biocontrol Science and Technology, 4, 279-288.
51. Duijff, B J, Gianinazzi-Pearson, V., & Lemanceau, P. (1996). Involvement of the outermembrane lipopolysaccharides in the endophytic colonization of tomato roots by biocontrol Pseudomonas fluorescens strain WCS417r. New Phytologist, 125, 325-334.
52. Duijff, B. J., Gianinazzi-Pearson, V., & Lemanceau, P. (1997). Involvement of the outer membrane lipopolysaccharides in the endophytic colonization of tomato roots by biocontrol Pseudomonas fluorescens strain WCS417r. New Phytologist, 135, 325-334.
53. Duijff, B. J., Pouhair, D., Olivain, C., Alabouvette, C., & Lemanceau, P. (1998). Implication of systemic induced resistance in the suppression of fusarium wilt of tomato by Pseudomonas fluorescens WCS417r and nonpathogenic Fusarium oxysporum Fo47. European Journal of Plant Pathology, 104, 903-910.
54. Duijff, B. J., Recorbet, G., Bakker, P. A. H. M., Loper, J., & Lemanceau, P. (1999). Microbial antagonism at the root level is involved in the suppression of fusarium wilt by the combination of nonpathogenic Fusarium oxysporum Fo47 and Pseudomonas putida WCS358. Phytopathology, 89, 1073-1079.
55. Edel, V., Steinberg, C., Gautheron, N., Recorbet, G., & Alabouvette, C. (2001). Genetic diversity of Fusarium oxysporum populations isolated from different soils in France. FEMS Microbiology Ecology, 36, 61-71.
56. Edwards, S. G., Young, J. P. W. & Fitter, A.H. (1998). Interactions between Pseudomonas fluorescens biocontrol agents and Glomus mosseae, an arbuscular mycorrhizal fungus, within the rhizosphere. FEMS Microbiology Letters, 166, 297-303.
57. Elad, Y., & Baker, R. (1985). The role of competition for iron and carbon in suppression of chlamydospore germination of Fusarium spp. by Pseudomonas spp. Phytoptahology, 75, 1053-1059.
58. Ellis R. J., Timms-Wilson T. M, & Bailey M. J. (2000). Identification of conserved traits in fluorescent pseudomonads with antifungal activity. Environmental Microbioliogy, 2, 274-284.
59. Emery, T. (1965). Isolation, characterization, and properties of fusarinine, a δ-hydroxamic acid derivative of ornithine. Biochemistry, 4, 1410-1417.
60. Eparvier, A., Lemanceau, P., & Alabouvette, C. (1991). Population dynamics of non-pathogenic Fusarium and fluorescent Pseudomonas strains in rockwool, a substratum for soilless culture. FEMS Microbiology Ecology, 86, 177-184.
61. Fenton, A. M., Stephens, P. M., Crowley, J., O'Callaghan, M., & O'Gara, F. (1992). Exploitation of gene(s) involved in 2, 4-diacetylphloroglucinol biosynthesis to confer a new biocontrol capability to Pseudomonas strain. Applied and Environmental Microbiology, 58, 3873-3878.
62. Fravel, D. R. (1988). Role of antibiosis in the biocontrol of plant diseases. Annual Review of Phytopathology, 26, 75-91.
63. Fuchs J. G., Moënne-Loccoz Y., & Défago G. (1997). Nonpathogenic Fusarium oxysporum strain Fo47 induces resistance to Fusarium wilt in tomato. Plant Disease, 81, 492-496.
64. Garbeva, P., van Veen, J. A., & van Elsas, J. D. (2004). Microbial diversity in soil: Selection of microbial populations by plant and soil type and implications in soil suppressiveness. Annual Review of Phytopathology, 42, 243-270.
65. Garrett, S. D. (1970). Pathogenic Root-Infecting Fungi. Cambridge: Cambridge University Press.
66. Gasser, R., & Défago, G. (1981). Mise en évidence de la résistance de certaines terres à la pourriture noire des racines du tabac causée par le Thielaviopsis basicola. Botanica Helvetica, 91, 75-80.
67. Gerlagh, M. (1968). Introduction of Ophiobulus graminis into new polders and its decline. Netherlands Journal of Plant Pathology, 74 (Suppl. 2), 1-97.
68. Gill, P. R., & Warren, G. J. (1988). An iron-antagonized fungistatic agent that is not required for iron assimilation from a fluorescent rhizosphere pseudomonad. Journal of Bacteriology, 170, 163-170.
69. Gomes, N. C. M., Heuer, H., Schonfeld, J., Costa, R., MendoncaHagler, L., & Smalla, K. (2001). Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis. Plant and Soil, 232, 167-180.
70. Goodacre, R., Vaidyanathan, S., Dunn, W. B., Harrigan, G. G., & Kell, D. B. (2004). Metabolomics by numbers: Acquiring and understanding global metabolite data. Trends in Biotechnology, 22, 245-252.
71. Gurusiddajah, S., Weller, D. M., Sarkar, A., & Cook, R. J. (1986). Characterization of an antibiotic produced by a strain of Pseudomonas fluorescens inhibitory to Gaeumannomyces graminis var. tritici and Pythium spp. Antimicrobial Agents and Chemotherapy, 29, 488-495.
72. Hamdan, H., Weller, D. M., & Thomashow, L. S. (1991). Relative importance of fluorescent siderophores and other factors in biological control of Gaeumannomyces graminis var. tritici by Pseudomonas fluorescens 2-79 and M4-80R. Applied and Environmental Microbiology, 57, 3270-3277.
73. Haas, D., & Keel, C. (2003). Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease. Annual Review of Phytopathology, 41, 117-153.
74. Haas, D., & Défago, G. (2005). Biological control of soil-borne pathogens by fluorescent pseudomonads. Nature Reviews Microbiology, 3, 307-319.
75. Hase, C., Hottinger, G., Moënne-Loccoz, Y., & Défago, G. (2000). Survival and cell culturability of biocontrol Pseudomonas fluorescens CHA0 in the rhizosphere of cucumber grown in two soils of contrasting fertility status. Biology and Fertility of Soils, 32, 217-221.
76. Heming, B. C. (1986). Microbial-iron interactions in the rhizosphere. An overview. Journal of Plant Nutrition, 9, 502-521.
77. Heuer, H., Krsek, M., Baker, P., Smalla, K., & Wellington, E. M. H. (1997). Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Applied and Environmental Microbiology, 63, 3233-3241.
78. Hill, C., Com-Nougué, C., Kramar, A., Moreau, T., O'Quigley, J., Senoussi, R., & Chastang, C. (1990). Analyse statistique des données de survie. Paris: Flammarion.
79. Hojberg, O., Schnider, U., Winteler, H.V., Sorensen, J., & Haas, D. (1999). Oxygen-sensing reporter strain of Pseudomonas fluorescens for monitoring the distribution of low-oxygen habitats in soil. Applied and Environmental Microbiology, 65, 4085-4093.
80. Höper, H., Steinberg, C., & Alabouvette, C. (1995). Involvement of clay type and pH in the mechanisms of soil suppressiveness to fusarium wilt of flax. Soil Biology Biochemistry, 27, 955-967.
81. Hornby, D. (1998). Take-all disease of cereals: A regional perspective. Wallingford: CAB International.
82. Huang, Z., Bonsall, R. F., Mavrodi, D. V., Weller, D. M., & Thomashow, L. S. (2004). Transformation of with genes of phenazine-1-carboxylic acid improves biocontrol of rhizoctonia root rot and in situ antibiotic production. FEMS Microbiology Ecology, 19, 243-251.
83. Iavicoli, A., Boutet, E., Buchala, A., & Métraux, J. P. (2003). Induced systemic resistance in Arabidopsis thaliana in response to root inoculation with Pseudomonas fluorescens CHA0. Molecular Plant-Microbe Interactions, 16, 851-858.
84. Johansen, J. E., Binnerupn, S. J., Bang Lejbølle, K., Mascher, F., Sørensen, J., & Keel, C. (2002). Impact of biocontrol strain Pseudomonas fluorescens CHA0 on rhizosphere bacteria isolated from barley (Hordeum vulgare L.) with special reference to Cytophaga-like bacteria. Journal Applied Microbiology, 93, 1065-1074.
85. Kandan, A., Ramiah, M., Vasanthi, V. J., Radjacommare, R., Nandakumar, R., Ramanathan, A., & Samiyappan, R. (2005). Use of Pseudomonas fluorescens-based formulations for management of tomato spotted wilt virus (TSWV) and enhanced yield in tomato. Biocontrol Science and Technology, 15, 553-569.
86. Keel, C., Voisard, C., Berling, C. H., Kahr, G., & Défago, G. (1989). Iron sufficiency, a prerequisite for suppression of tobacco black root rot by Pseudomonas fluorescens strain CHA0 under gnotobiotic conditions. Phytopathology, 79, 584-589.
87. Keel, C., Ucurum, Z., Michaux, M., Adrian, M., & Haas, D. (2002). Deleterious impact of a virulent bacteriophage on survival and biocontrol activity of Pseudomonas fluorescens strain CHA0 in natural soil. Molecular Plant-Microbe Interactactions, 15, 567-576.
88. Keel, C., Weller, D. M., Natsch, A., Défago, G., Cook, R. J., & Thomashow, L. S. (1996). Conservation of the 2, 4-diacetylphloroglucinol biosynthesis locus among fluorescent Pseudomonas strains from diverse geographic locations. Applied and Environmental Microbiology, 62, 552-563.
89. Keel, C., Schnider, U., Maurhofer, M., Voisard, C., Burger, U., Wirthner, Ph., Haas, D., & Défago, G. (1992). Suppression of root diseases by Pseudomonas fluorescens CHA0: Importance of the bacterial secondary metabolite 2, 4-diacetylphloroglucinol. Molecular Plant Microbe Interactions, 5, 4-13.
90. Kerry, B. R., & Crump, D. H. (1998). The dynamics of the decline of the cereal cyst-nematode, Heterodera avenae, in four soils under intensive cereal production. Fund. Applied Nematology, 21, 617-625.
91. Khan, S. R., Mavrodi, D. V., Jog, G. J., Suga, H., Thomashow, L. S., & Farrand, S. K. (2005). Activation of the phz operon of Pseudomonas fluorescens 2-79 requires the LuxR homolog PhzR, N-(3-OH-hexanoyl)-L-homoserine lactone produced by the LuxI homolg phzI, and a cis-acting phz box. Journal of Bacteriology, 187, 6517-6527.
92. Kloepper, J. W., Leong, J., Teintze, M., & Schroth, M. N. (1980). Pseudomonas siderophores: A mechanism explaining disease suppression soils. Current Microbiology, 4, 317-320.
93. Komada, H., & Ezuka, A. (1970). Ecological study of Fusarium diseases of vegetable crops. I. Survival of pathogenic Fusaria in different soil types. Research Progress Report.of the Tokai-Kinki National Agricultural Station, 6, S.1-6.
94. Larkin, R. P., Hopkins, D. L., & Martin, F. N. (1993). Effect of successive watermelon plantings on Fusarium oxysporum and other microorganisms suppressive and conducive to fusarium wilt of watermelon. Phytopathology 83, 1097-1105.
95. Latour, X., Corberand, T., Laguerre, G., Allard, F., & Lemanceau, P. (1996). The composition of fluorescent pseudomonad population associated with roots is influenced by plant and soil type. Applied and Environmental Microbioliogy, 62, 2449-2556.
96. Laville, J., Voisard, C., Keel, C., Maurhofer, M., Défago, G., & Haas D., (1992). Global control in Pseudomonas fluorescens mediating antibiotic synthesis and suppression of black root rot of tobacco. Proceedings of the National Academy of Science, U.S.A., 89, 1562-1566.
97. Laville, J., Blumer, C., Von Schroetter, C., Gaia, V., Défago, G., Keel, C., & Haas, D. (1998). Characterization of the hcnABC gene cluster encoding hydrogen cyanide synthase and anaerobic regulation by ANR in the strictly aerobic biocontrol agent Pseudomonas fluorescens CHA0. Journal of Bacteriology, 180, 3187-3196.
98. Leeman, M., Den Ouden, F. M., Van Pelt, J. A., Cornelissen, C., Bakker P. A. H. M., & Schippers B. (1996). Suppression of Fusarium wilt of radish by co-inoculation of fluorescent Pseudomonas spp. and root colonizing fungi. European Journal of Plant Pathology, 102, 21-31.
99. Lemanceau, P. (1992). Effets bénéfiques de rhizobactéries sur les plantes : Exemple des Pseudomonas spp. fluorescents. Agronomie, 12, 413-437.
100. Lemanceau, P., & Alabouvette, C. (1991). Biological control of fusarium diseases by fluorescent Pseudomonas and non-pathogenic Fusarium. Crop Protection, 10, 279-286.
101. Lemanceau, P., & Alabouvette, C. (1993) Suppression of fusarium wilts by fluorescent pseudomonads: mechanisms and applications. Biocontrol Science and Technology, 3, 219-234.
102. Lemanceau, P., Alabouvette, C., & Meyer, J. M. (1986). Production of fusarinine and iron assimilation by pathogenic and non-pathogenic Fusarium. In T. R. Swinburne (Ed.), Iron, siderophores, and plant diseases (pp. 251-253). New York: Plenum.
103. Lemanceau, P., Alabouvette, C., Couteaudier, Y. (1988a). Recherches sur la résistance des sols aux maladies. XIV. Modification du niveau de réceptivité d'un sol résistant et d'un sol sensible aux fusarioses vasculaires en réponse à des apports de fer ou de glucose. Agronomie, 8, 155-162.
104. Lemanceau, P., Samson, R., Alabouvette, C. (1988b). Recherches sur la résistance des sols aux maladies. XV. Comparaison des populations de Pseudomonas fluorescents dans un sol résistant et un sol sensible aux fusarioses vasculaires. Agronomie, 8, 243-249.
105. Lemanceau, P., Bakker, P. A. H. M., De Kogel, W. J., Alabouvette, C., & Schippers, B. (1992). Effect of pseudobactin 358 production by Pseudomonas putida WCS358 on suppression of fusarium wilt of carnations by nonpathogenic Fusarium oxysporum Fo47. Applied and Environmental Microbiology, 58, 2978-2982.
106. Lemanceau, P., Bakker, P. A. H. M., De Kogel, W. J., Alabouvette, C., & Schippers, B. (1993). Antagonistic effect of nonpathogenic Fusarium oxysporum Fo47 and pseudobactin 358 upon pathogenic Fusarium oxysporum f. sp. dianthi. Applied and Environmental Microbiology, 59, 74-82.
107. Leong, J. (1986) Siderophores: Their biochemistry and possible role in the biocontrol of plant pathogens. Annual Review of Phytopathology, 24, 187-209.
108. Linderman, R. G., Moore, L. W., Baker, K. F., & Cooksey, D. A. (1983). Strategies for detecting and characterizing systems. Plant Disease, 67, 1058-1064.
109. Lindsay, W. L. (1979). Chemical Equilibria in Soils. New York: John Wiley & Sons.
110. Locatelli, L., Tarnawski, S., Hamelin, J., Rossi, P., Aragno, M., & Fromin, N. (2002). Specific PCR amplification for the genus Pseudomonas targeting the 3' half of 16S rDNA and the whole 16S-23S rDNA spacer. Systematic and Applied Microbiology, 25, 220-227.
111. Lockwood, J. L. (1977). Fungistasis in soils. Biology Review, 52, 1-43.
112. Loper, J. E., & Buyer, J. S. (1991). Siderophores in microbial interactions on plant surfaces. Molecular Plant-Microbe Interactions, 4, 5-13.
113. Louvet, J. (1973). Les perspectives de lutte biologique contre les champignons parasites des organes souterrains des plantes. In Perspectives de lutte biologique contre les champignons parasites des plantes cultivées et des tissus ligneux (pp. 48-56). Lausanne: Symposium international.
114. Louvet, J., Rouxel, F., & Alabouvette, C. (1976). Recherches sur la résistance des sols aux maladies. I - Mise en évidence de la nature microbiologique de la résistance d'un sol au développement de la fusariose vasculaire du melon. Annales de Phytopathologie, 8, 425-436.
115. Lucas, P., & Sarniguet, A. (1990). Soil receptivity to take-all: Influence of some cultural practices and soil chemical characteristics. Symbiosis, 9, 51-57.
116. Mann, M. (1999). Quantitative proteomics? Nature Biotechnology, 17, 954-955.
117. Maron, P.-A., Ranjard, L., Mougel, C., & Lemanceau, P. Metaproteomics: A new approach for studying functional microbial ecology. Microbial Ecology, submitted for publication.
118. Martin-Laurent, F., Philippot, L., Hallet, S., Chaussod, R., Germon, J.C., Soulas, G., & Catroux, G. (2001). DNA extraction from soils: old bias for new microbial diversity analysis methods. Applied and Environmental Microbiology, 67, 2354-2359.
119. Mascher, F., Hase, C., Moënne-Loccoz, Y., & Défago, G. (2000). The viable-but-nonculturable state induced by abiotic stress in the biocontrol strain Pseudomonas fluorescens CHA0 does not promote strain persistence in soil. Applied and Environmental Microbiology, 66, 1662-1667.
120. Mascher, F., Moënne-Loccoz, Y., Schnider-Keel, U., Keel, C., Haas, D., & Défago, G. (2002). Inactivation of regulatory genes algU or gacA affects the ability of biocontrol Pseudomonas fluorescens CHA0 to persist as culturable cells in non-sterile soil. Applied and Environmental Microbiology, 68, 2085-2088.
121. Matsuki, T., Watanabe, K., Fujimoto, J., Miyamoto, Y., Takad, T., Matsumoo, K., Oyaizu, H., & Tanaka, R. (2002). Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces. Applied and Environmental Microbiology, 68, 5445-5451.
122. Matta, A., Gentile, I. A., & Ferraris, L. (1989). Induced resistance to Fusarium wilt diseases. In E. C. Tjamos & C. H. Beckman (Eds), Vascular wilt diseases of pants. Basic studies and control (pp. 175-196). Berlin: Springer-Verlag.
123. Maurhofer, M., Baehler, E., Notz, R., Martinez, V. & Keel, C. (2004). Cross-talk between 2, 4-diacetylphloroglucinol-producing biocontrol pseudomonads on wheat roots. Applied and Environmental Microbiology, 70, 1990-1998.
124. Maurhofer, M., Keel, C., Schnider, U., Voisard, C., Haas, D., & Défago, D., (1992). Influence of enhanced antibiotic production in Pseudomonas fluorescens strain CHA0 on its disease suppressive capacity. Phytopathology, 82, 190-195.
125. Maurhofer, M., Hase, C., Meuwly, Ph., Métraux, J. P., & Défago, G. (1994a). Induction of systemic resistance of tobacco to tobacco necrosis virus by the root colonizing Pseudomonas fluorescens strain CHA0: Influence of the gacA gene and of pyoverdin production. Phytopathology, 89, 139- 146.
126. Maurhofer, M., Keel, C., Haas, D., & Défago, D. (1994b). Pyoluteorin production by Pseudomonas fluorescens strain CHA0 is involved in the suppression of Pythium damping-off of cress but not of cucumber. European Journal Plant Pathology, 100, 221-232.
127. Maurhofer, M., Keel, C., Haas, D., & Défago, D. (1995). Influence of plant species on disease suppression by Pseudomonas fluorescens strain CHA0 with enhanced antibiotic production. Plant Pathology, 44, 40-50.
128. Maurhofer, M., Reimmann, C., Schmidli-Sacherer, P., Heeb, S., Haas, D., & Défago, D. (1998). Salicylic acid biosynthetic genes expressed in Pseudomonas fluorescens strain P3 improve the induction of systemic resistance in tobacco against tobacco necrosis virus. Phytopathology, 88, 78-684.
129. Mavrodi, D. V., Ksenzenko, V. N., Bonsall, R. F., Cook, R. J., Boronin, A. M., & Thomashow, L. S. (1998). A seven gene locus for synthesis of phenazine-1-carboxylic acid by Pseudomonas fluorescens 2-79. Journal of Bacteriology, 180, 1894-1903.
130. Mazurier, S., Lemunier, M., Siblot, S., Mougel, C., & Lemanceau, P. (2004). Distribution and diversity of type III secretion system like genes in fluorescent pseudomonads. FEMS Microbiology Ecology, 49, 455-467.
131. Mazzola M. (2002). Mechanisms of natural soil suppressiveness to soilborne diseases. Antonie van Leeuwenhoek, 81, 557-564.
132. Mazzola, M. (2004). Assessment and management of soil microbial community structure for disease suppression. Annual Review of Phytopathology, 42, 35-59.
133. Mazzola, M., Funnell, D. L., & Raaijmakers, J. M. (2004). Wheat cultivar-specific selection of 2, 4-diacetylphloroglucinol-producing fluorescent Pseudomonas species from resident soil populations. Microbiol. Ecology, 48, 338-348.
134. Mazzola, M., Cook, R. J., Thomashow, L. S., Weller, D. M. & Pierson III, L. S. (1992). Contribution of phenazine antibiotic production to the ecological competence of fluorescent pseudomonads in soil habitats. Applied and Environmental Microbiology, 58, 2616-2624.
135. McSpadden Gardener, B. B., Schroeder, K. L., Kalloger, S. E., Raaijmakers, J. M., Thomashow, L. S., & Weller, D. M. (2000). Genotypic and phenotypic diversity of phlD-containing Pseudomonas strains isolated from the rhizosphere of wheat. Applied and Environmental Microbiology, 66, 1939-1946.
136. Meyer, J. M., & Abdallah, M. A. (1978). The fluorescent pigment of Pseudomonas fluorescens: biosynthesis, purification and physico-chemical properties. Journal of General Microbiology, 107, 319-328.
137. Mirleau, P., Philippot, L., Corberand, T., & Lemanceau, P. (2001). Involvement of nitrate reductase and pyoverdine in competitiveness of Pseudomonas fluorescens strain C7R12 in soil. Applied and Environmental Microbiology, 67, 2627-2635.
138. Mirleau, P., Delorme, S., Philippot, L., Meyer, J. M., & Mazurier, S., Lemanceau, P. (2000). Fitness in soil and rhizosphere of Pseudomonas fluorescens C7R12 compared with a C7R12 mutant affected in pyoverdine synthesis and uptake. FEMS Microbiology Ecology, 34, 35-44.
139. Moënne-Loccoz, Y., & Défago, G. (2004). Life as a biocontrol pseudomonad. In J. L. Ramos (Ed.), Pseudomonas (Volume 1, pp. 457-476). New York: Kluwer Academic/Plenum Publishers.
140. Morrissey, J. P., Cullinane, M., Abbas, A., Mark, G. L., & O'Gara, F. (2004). Biosynthesis and regulation of anti-fungal metabolites by pseudomonads. In J. L. Ramos (Ed.), Pseudomonas (Volume 3, pp. 637-670). New York: Kluwer Academic, Plenum Publishers.
141. Natsch, A., Keel, C., Hebecker, N., Laasik, E., & Défago, D. (1997). Influence of biocontrol strain Pseudomonas fluorescens CHA0 and its antibiotic overproducing derivative on the diversity of resident root colonizing pseudomonads. FEMS Microbiology Ecology, 23, 341-52.
142. Natsch, A., Keel, C., Hebecker, N., Laasik, E., & Défago, G. (1998). Impact of Pseudomonas fluorescens strain CHA0 and a derivative with improved biocontrol activity on the culturable resident bacterial community on cucumber roots. FEMS Microbiology Ecology, 27, 365-380.
143. Natsch, A., Keel, C., Troxler, J., Zala, M., VonAbertini, N., & Défago, G. (1996). Importance of preferential flow and soil management in vertical transport of a biocontrol strain of Pseudomonas fluorescens in structured field soil. Applied and Environmental Microbiology, 62, 33-40.
144. Neilands, J. B., & Leong, S. A. (1986). Siderophores in relation to plant growth and disease. Annual Review of Plant Physiology, 37, 187-208.
145. Niemann, S., Keel, C., Pühler, A., & Selbitschka, W. (1997). Biocontrol strain Pseudomonas fluorescens CHA0 and its genetically modified derivative with enhanced biocontrol capability exert comparable effects on the structure of a Sinorhizobium meliloti population in gnotobiotic systems. Biology and Fertility of Soils, 25, 240-244.
146. Nogales, B., Moore, E. R., Llobet-Brossa, E., Rossello-Mora, R., Amann, R., & Timmis, K.N. (2001). Combined use of 16S Ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted Soil. Applied and Environmental Microbiology, 67, 1874-1884.
147. Notz, R., Maurhofer, M., Dubach, H., Haas, D., & Défago, G. (2002). Fusaric acid-producing strains of Fusarium oxysporum alter 2, 4-diacetylphloroglucinol biosynthetic gene expression in Pseudomonas fluorescens CHA0 in vitro and in the rhizosphere of wheat. Applied and Environmental Microbiology, 68, 2229-2235.
148. Notz, R., Maurhofer, M., Schnider-Keel, U., Duffy, B., Haas, D., & Défago, G. (2001). Biotic factors affecting expression of the 2, 4-diacetylphloroglucinol biosynthesis gene phlA in Pseudomonas fluorescens biocontrol strain CHA0 in the rhizosphere. Phytopathology, 91, 873-881.
149. Olivain, C., Alabouvette, C., & Steinberg, C. (2004). Production of a mixed inoculum of Fusarium oxysporum Fo47 and Pseudomonas fluorescens C7 to control Fusarium diseases. Biocontrol Sciences and Technology, 14, 227-238.
150. Park, C. S., Paulitz, T. C., & Baker, R. (1988). Biocontrol of Fusarium wilt of cucumber resulting from the interactions between Pseudomonas putida and non-pathogenic isolates of Fusarium oxysporum. Phytopathology, 78, 190-194.
151. Paulitz, T. C., Park, C. S., & Baker, R. (1987). Biological control of Fusarium wilt of cucumber with nonpathogenic isolates of Fusarium oxysporum. Canadian Journal of Microbiology, 33, 349-353.
152. Paulsen, I. T., Press, C. M., Ravel, J., Kobayashi, D. Y., Myers, G. S. A., Mavrodi, D. V., DeBoy, R. T., Seshadri, R., Ren, Q. H., Madupu, R., Dodson, R. J., Durkin, A. S., Brinkac, L. M., Daugherty, S. C., Sullivan, S. A., Rosovitz, M. J., Gwinn, M. L., Zhou, L. W., Schneider, D. J., Cartinhour, S. W., Nelson, W. C., Weidman, J., Watkins, K., Tran, K., Khouri, H., Pierson, E. A., Pierson, L. S., Thomashow, L. S., Loper, J. E. (2005) Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5. Nature Biotechnology, 23, 873-878.
153. Peng, H. X., Sivasithamparam, K., & Turner, D. W. (1999). Chlamydospore germination and Fusarium wilt of banana plantlets in suppressive and conducive soils are affected by physical and chemical factors. Soil Biology and Biochemistry, 31, 1363-1374.
154. Raaijmakers, J. M., & Weller, D. M. (1998). Natural plant protection by 2, 4-diacetylphloroglucinolproducing Pseudomonas spp. in take-all decline soils. Molecular Plant-Microbe Interactions, 11, 144-152.
155. Raaijmakers, J. M., & Weller, D. M. (2001). Exploting diversity of 2, 4-diacetylpholoroglucinolproducing Pseudomonas spp.: characterization of superior root-colonizing P. fluorescens strain Q8r1-96. Applied and Environmental Microbiology, 67, 2545-2554.
156. Raaijmakers, J. M., Weller, D. M., & Thomashow, L. S. (1997). Frequency of antibiotic-producing Pseudomonas spp. in natural environments. Applied and Environmental Microbiology, 63, 881-887.
157. Raaijmakers, J. M., Bonsall, R. E., & Weller, D. M. (1999). Effect of population density of Pseudomonas fluorescens on production of 2, 4-diacetylphloroglucinol in the rhizosphere of wheat. Phytopathology, 89, 470-475.
158. Raaijmakers J. M., Viami, M., & de Souza, J. T. (2002). Antibiotic production by bacterial biocontrol agents. Antonie van Leeuwenhoek, 81, 537-547.
159. Raaijmakers, J. M., Leeman, M., Van Oorschot, M. M. P., Van der Sluis, I., Schippers, B., & Bakker, P. A. H. M. (1995). Dose-response relationships in biological control of fusarium wilt of radish by Pseudomonas spp. Phytopathology, 85, 1075-1081.
160. Radajewski, S., Ineson, P., Parekh, N. R., & Murrell, J. C. 2000. Stable-isotope probing as a tool in microbial ecology. Nature, 403, 646-649.
161. Ramette, A., Moënne-Loccoz, Y., & Défago, G. (2001). Polymorphism of the polyketide synthase gene phlD in biocontrol flurescent Pseudomonas spp. Producing 2, 4-diacetylphloroglucinol. Molecular Plant-Microbe Interactions, 14, 639-652.
162. Ramette, A., Moënne-Loccoz, Y. & Défago, G. (2003a). Prevalence of fluorescent pseudomonads producing antifungal phloroglucinols and/or hydrogen cyanide in soils naturally suppressive or conducive to tobacco black root rot. FEMS Microbiology Ecology, 44, 35-43.
163. Ramette, A., Moënne-Loccoz, Y., & Défago, G. (2006) Genetic diversity and biocontrol potential of fluorescent pseudomonads producing phloroglucinols and HCN from Swiss soils naturally suppressive or conducive to Thielaviopsis basicola-mediated black root rot of tobacco. FEMS Microbiology Ecology, in press.
164. Ramette, A., Frapolli, M., Moënne-Loccoz, Y., & Défago, G. (2003b) Phylogenetic analysis of HCN synthase-encoding hcnBC in biocontrol fluorescent pseudomonads and relationship with bacterial biogeography and HCN synthesis. Molecular Plant-Microbe Interactions, 16, 525-535.
165. Ranjard, L, Brothier, E., & Nazaret, S. (2000). Sequencing bands of ribosomal intergenic spacer analysis fingerprints for characterization and microscale distribution of soil bacterium populations responding to mercury spiking. Applied and Environmental Microbiology, 66, 5334-5339.
166. Reimmann, C., Valverde, C., Kay, E. & Haas, D. 2005 Posttranscriptional repression of GacS/GacAcontrolled genes by the RNA-binding protein RsmE acting together with RsmA in the biocontrol strain Pseudomonas fluorescens CHA0. Journal of Bacteriology, 187, 276-285.
167. Rondon, M. R., August, P. R., Bettermann, A. D., Brady, S. F., Grossman, T. H., Liles, M. R., Loiacono, K. A., Lynch, B. A., MacNeil, I. A., Minor, C., Tiong, C. L., Gilman, M., Osburne, M. S., Clardy, J., Handelsman, J., & Goodman, R. M. 2000. Cloning the soil metagenome: A strategy for accessing the genetic and functional diversity of uncultured microorganisms. Applied and Environmental Microbiology 66, 2541-2547.
168. Rouxel, F., Alabouvette, C., & Louvet, J. (1977). Recherches sur la résistance des sols aux maladies. II - Incidence de traitements thermiques sur la résistance microbiologique d'un sol à la fusariose vasculaire du melon. Annales de Phytopathologie, 9, 183-189.
169. Rouxel, F., Alabouvette, C., & Louvet, J. (1979). Recherches sur la résistance des sols aux maladies. IV - Mise en évidence du rôle des Fusarium autochtones dans la résistance d'un sol à la fusariose vasculaire du melon. Annales de Phytopathologie, 11, 199-207.
170. Sacherer, P., Défago, G., & Haas, D., (1994). Extracellular protease and phospholipase C are controlled by the global regulatory gene gacA in the biocontrol strain Pseudomonas fluorescens CHA0. FEMS Microbiology Letters, 116, 155-160.
171. Sanchez, L., Weidmann, S., Brechenmacher, L., Batoux, M., van Tuinen, D., Lemanceau, P., Gianinazzi, S., & Gianinazzi-Pearson, V. (2004). Common gene expression in Medicago truncatula roots in response to Pseudomonas fluorescens colonisation, mycorrhiza development and nodulation. New Phytologist, 161, 855-863.
172. Scher, F. M., & Baker, R. (1980). Mechanism of biological control in a Fusarium suppressive soil. Phytopathology, 70, 412-417.
173. Scher, F. M., & Baker, R. (1982). Effect of a Pseudomonas putida and a synthetic iron chelator on induction of soil suppressiveness to Fusarium wilt pathogens. Phytopathology, 72, 1567-1573.
174. Schmidli-Sacherer, P., Keel, C., & Défago, G. (1997). The global regulator GacA of Pseudomonas fluorescens CHA0 is required for suppression of root diseases in dicotyledons but not in Gramineae. Plant Pathology, 46, 80-90.
175. Schneider, R. W. (1982). Suppressive soils and plant disease. St Paul: Amer. Phytopathol. Soc.
176. Schnider-Keel, U., Bang Lejbølle, K., Baehler, E., Haas, D., & Keel, C. (2001). The sigma factor AlgU (AlgT) controls exopolysaccharide production and tolerance towards desiccation and osmotic stress in the biocontrol agent Pseudomonas fluorescens CHA0. Applied and Environmental Microbiology, 67, 5683-5693.
177. Schnider, U., Keel, C., Blumer, C., Troxler, J., Défago, G., & Haas, D. (1995a). Amplification of the housekeeping sigma factor in Pseudomonas fluorescens CHA0 enhances antibiotic production and improves biocontrol abilities. Journal of Bacteriology, 177, 5387-5392.
178. Schnider, U., Keel, C., Voisard, C., Défago, G., & Haas, D. (1995b). Tn5-directed cloning of pqq genes from Pseudomonas fluorescens CHA0: mutational inactivation of the genes results in overproduction of the antibiotic pyoluteorin. Applied and Environmental Microbiology, 61, 3856- 3864.
179. Schnider-Keel, U., Seematter, A., Maurhofer, M., Blumer, C., Duffy, B., Gigot-Bonnefoy, C., Reimmann, C., Notz, R., Défago, G., Haas, D., Keel, C. (2000). Autoinduction of 2, 4- diacetylphloroglucinol biosynthesis in the biocontrol agent Pseudomonas fluorescens CHA0 and repression by the bacterial metabolites salicylate an pyoluteorin. Journal of Bacteriology, 182, 1215-1225.
180. Schouten, A., van den Berg, G., Edel, V., Steinberg, C., Gautheron, N., Alabouvette, C., de Vos, E., Lemanceau, P., & Raaijsmakers, J. (2004). Defence responses of Fusarium oxysporum to 2, 4- diacetylphloroglucinol, a broad-spectrum antibiotic produced by Pseudomonas fluorescens. Molecular Plant-Microbes Interactions, 17, 1201-1211.
181. Sebat, J. L., Colwell, F. S., & Crawford, R. L. (2003). Metagenomic profiling: microarray analysis of an environmental genomic library. Applied and Environmental Microbiology, 69, 4927-4934.
182. Sharifi-Tehrani, A., Zala, M., Natsch, A., Moënne-Loccoz, Y., & Défago, G. (1998). Biocontrol of soilborne fungal plant diseases by 2, 4-diacetylphloroglucinol-producing fluorescent pseudomonads with different restriction profiles of amplified 16S rDNA. European Journal Plant Pathology, 104, 631-643.
183. Shipton, P. J. (1975). Take-all decline during cereal monoculture. In. G. W. Bruehl (Ed), Biology and Control of Soil-Borne Plant Pathogens (pp. 137-144). St Paul: Am. Phytopathol. Soc.
184. Siddiqui, I. A., & Shaukat, S. S. (2003). Suppression of root-knot disease by Pseudomonas fluorescens CHA0 in tomato: Importance of bacterial secondary metabolite, 2, 4-diacetylpholoroglucinol. Soil Biology and Soil Biochemistry, 35, 1615-1623.
185. Siddiqui, I. A., & Shaukat, S. S. (2005). Phenylacetic acid-producing Rhizoctonia solani represses the biosynthesis of nematicidal compounds in vitro and influences biocontrol of Meloidogyne incognita in tomato by Pseudomonas fluorescens strain CHA0 and its GM derivatives. Journal of Applied Microbiology, 98, 43-55.
186. Slininger, F. J., Burkhead, K. D., Schisler, D. A., & Bothast, R. J. (2000). Isolation, identification, and accumulation of 2-acetamidophenol in liquid cultures of the wheat take-all biocontrol agent Pseudomonas fluorescens 2-79. Applied Microbiology and Biotechnology, 54, 376-381.
187. Small, J., Call, D. R., Brockman, F. J., Straub, T. M., & Chandler, D. P. (2001). Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays. Applied and Environmental Microbiology, 67, 4708-4716.
188. Smith, S. N. (1977). Comparison of germination of pathogenic Fusarium oxysporum chlamydospores in host rhizosphere soils conducive and suppressive to wilts. Phytopathology, 67, 502-510.
189. Smith, S. N., & Snyder, W. C. (1971). Germination of Fusarium oxysporum in soils favourable and unfavourable to wilt establishment. Phytopathology, 62, 273-277.
190. Sneh, B., Pozniak, D., & Salomon, D. (1987). Soil suppressiveness to fusarium wilt of melon, induced by repeated croppings of resistant varieties of melons. Journal of Phytopathology, 120, 347-354.
191. Sneh, B., Dupler, M., Elad, Y., & Baker, R. (1984). Chlamydospore germination of Fusarium oxysporum f.sp. cucumerinum as affected by fluorescent and lytic bacteria from Fusarium suppressive soil. Phytopathology. 74, 1115-1124.
192. Steinberg, C., Edel-Hermann, V., Guillemaut, C., Pérez-Piqueres, A., Singh, P., & Alabouvette, C. (2004). Impact of organic amendments on soil suppressiveness to diseases. In R. A. Sikora, S. Gowen, R. Hauschild & S. Kiewnick (Eds), Multitrophic interactions in soil and integrated control (pp. 259-266). Bonn: IOBC wprs Bulletin.
193. Stotzky, G., & Martin, R.T. (1963). Soil mineralogy in relation to the spread of Fusarium wilt of banana in Central America. Plant and Soil, 18, 317-337.
194. Stover, R. H. (1962). Fusarial wilt (Panama disease) of bananas and other Musa species. Kew: Commonwealth Mycological Institute.
195. Stutz, E. W. (1985). Krankheitsunterdrückende Böden in der Westschweiz. Zurich ETHZ: Ph.D. Thesis.
196. Stutz, E. W., & Défago, G. (1985). Effect of parent materials derived from different geological strata on suppressiveness of soils to black root rot of tobacco. In C. A Parker, A. D. Rovira, K. J. More, & P. T. W. Wong (Eds.), Ecology and management of soilborne plant pathogens (pp 215-217). St.Paul: American Phytopathological Society.
197. Stutz, E. W., Défago, G., & Kern, H. (1986). Naturally occurring fluorescent pseudomonads involved in suppression of black root rot of tobacco. Phytopathology, 76, 181-185.
198. Stutz, E. W., Kahr, G., & Défago, G. (1989). Clays involved in suppression of tobacco black root rot by a strain of Pseudomonas fluorescens. Soil Biology and Biochemistry, 21, 361-362.
199. Stutz, E. W., Défago, G., Hantke, R., & Kern, H. (1985). Effect of parent materials derived from different geological strata on suppressiveness of soils to black root rot of tobacco. In C. A. Parker, A. D. Rovira, K. J. Moore, P. T. W. Wong & J. F. Kollmorgen (Eds.), Ecology and Management of Soilborne Plant Pathogens (pp. 215-217). St. Paul, Minnesota: The American Phytopathological Society.
200. Tamietti, G., Ferraris, L., Matta, A., & Abbattista Gentile, I. (1993). Physiological responses of tomato plants grown in Fusarium suppressive soil. Journal of Phytopathology, 138, 66-76.
201. Taroncher-Oldenburg, G., Griner, E. M., Francis, C. A., & Ward, B. B. (2003). Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment. Applied and Environmental Microbiology, 69, 1159-1171.
202. Thomashow, L. S., & Weller, D. M. (1988). Role of a phenazine antibiotic from Pseudomonas fluorescens in the biological control of Gaeumanomyces graminis var. tritici. Journal of Bacteriology, 170, 3499-3508.
203. Thomashow, L. S., & Weller, D. M. (1990). Application of fluorescent pseudomonads to control root diseases of wheat and some mechanisms of disease suppression. In D. Hornby (Ed.), Biological Control of Soil-Borne Plant Pathogens (pp.109-122). Oxon: CAB International.
204. Thomashow, l. S., Weller, D. M., Bonsall, R. F. and Pierson III, L. S. (1990). Production of the antibiotic phenzine-1-carboxylic acid by fluorescent Pseudomonas species in the rhizosphere of wheat. Applied and Environmental Microbiology 56, 908-912.
205. Timms-Wilson, T. M., Ellis, R. J., Renwick, A., Rhodes, D. J., Mavrodi, D. V., Weller, D. M., Thomashow, L. S., & Bailey, M. J. (2000). Chromosomal insertion of phenazin-1-carboxylic acid biosynthetic pathway enhances efficacy of damping-off disease control by Pseudomonas fluorescens. Molecular Plant-Microbe Interactions, 13, 1293-1300.
206. Torsvik, T., Goksoyr, J. & Daae, F. L. (1990) High diversity in DNA of soil bacteria. Applied and Environmental Microbiology 56, 782-787.
207. Troxler, J., Berlin, C. H., Moënne-Loccoz, Y., Keel, C., & Défago, G. (1997a). Interactions between the biocontrol agent Pseudomonas fluorescens CHA0 and Thielaviopsis basicola in tobacco roots observed by immunofluorescence microscopy. Plant Patholology, 46, 62-71.
208. Troxler, J., Zala, M., Natsch, A., Moënne-Loccoz, Y., & Défago, G. (1997b). Autecology of the biocontrol strain Pseudomonas fluo-rescens CHA0 in the rhizosphere and inside roots at later stages of plant development. FEMS Microbiology Ecology, 23, 119-130.
209. Troxler, J., Zala, M., Natsch, A., Nievergelt, J., Keel, C., & Défago, G. (1998). Transport of a biocontrol Pseudomonas fluorescens through 2.5-m deep outdoor lysimeters and survival in the effluent water. Soil Biology and Biochemistry, 30, 621-631.
210. Validov, S., Mavrodi, O., De La Fuente, L., Boronin, A., Weller, D. M., Thomashow, L. S., & Mavrodi, D. (2005). Antagonistic activity among 2, 4-diacetylphloroglucinol-producing fluorescent Pseudomonas spp. FEMS Microbiology Letters, 242, 249-256.
211. Valverde, C., Heeb, S., Keel, C. & Haas, D. (2003). RsmY, a small regulatory RNA, is required in concert with RsmZ for GacA-dependent expression of biocontrol traits in Pseudomonas fluorescens CHA0. Molecular Microbiology, 50, 1361-1379.
212. Valverde, C., Lindell, M., Wagner, G.H. & Haas, D. (2004). A repeated GGA motif is critical for the activity and stability of the riboregulatore RsmY of Pseudomonas fluorescens. Journal of Biological Chemistry, 279, 25066-25074.
213. Van Loon, L. C., Bakker, P. A. H. M., & Pieterse, C. M. J. (1998). Systemic resistance induced by rhizosphere bacteria. Annual Review of Phytopathology, 36, 453-483.
214. Vincent, M. N., Harrison, M. N., Brackin, L. A., Kovacevich, J. M., Mukerji, P. A., Weller, D. M., & Pierson, E.A. (1991). Genetic analysis of the antifungal activity of a soilborne Pseudomonas aureofaciens strain. Applied and Environmental Microbiology, 57, 2928-2934.
215. Viswanathan, R., & Samiyappan, R. (2002). Induced systemic resistance by fluorescent pseudomonads against red rot disease of sugarcane caused by Colletotrichum falcatum. Crop Protection, 21, 1-10.
216. Voisard, C., Keel, C., Haas, D., & Défago, G. (1989). Cyanide production by Pseudomonas fluorescens helps suppress black root rot of tobacco under gnotobiotic conditions. EMBO Journal, 8, 351-358.
217. Voget, S., Leggewie, C., Uesbeck, A., Raasch, C., Jaeger, K.E., & Streit, W. R. (2003). Prospecting for novel biocatalysts in a soil metagenome. Applied and Environmental Microbiology, 69, 6235-6242.
218. Von Wintzingerode, F., Göbel, U.B., & Stackebrandt, E. (1997). Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis. FEMS Microbial Reviews, 21, 213-219.
219. Wang, C. X., Ramette, A., Punjasamarnwong, P., Zala, M., Natsch, A., Moënne-Loccoz, Y., & Défago, G. (2001). Cosmopolitan distribution of phlD-containing dicotyledonous crop-associated biocontrol pseudomonads of worldwide origin. FEMS Microbiology Ecology, 37, 105-116.
220. Weller, D. M. (1988). Biological control of soilborne plant pathogens in the rhizosphere with bacteria. Annual Review of Phytopathology, 26, 379-407.
221. Weller, D. M., & Cook, R. J. (1983). Suppression of take-all of wheat by seed treatments with fluorescent pseudomonads. Phytopathology, 73, 463-460.
222. Weller, D. M., Howie, W. J., Cook, R. J. (1988). Relationship between un vitro inhibition of Gaeumannomyces graminis var. tritici and suppression of take-all of wheat by fluorescent pseudomonads. Phytopathology, 78, 1094-1100.
223. Weller, D. M., Raaijmakers, J. M., Gardener, B. B. M. & Thomashow, L. S. (2002). Microbial populations responsible for specific soil suppressiveness to plant pathogens. Annual Review of Phytopathology, 40, 309-348.
224. Westphal, A., & Becker, J. O. (1999). Biological suppression and natural population decline of Heterodera schachtii in a California field. Phytopathology, 83, 581-589.
225. Wilmes, P., & Bond, P. L. (2004). The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms. Environmental Microbiology, 6, 911-920.
226. Wu, L., Thompson, D. K., Li, G., Hurt, R. A., Tiedje, J. M. and Zhou, J. (2001). Development and evaluation of functional gene arrays for detection of selected genes in the environment, Applied and Environmental Microbiology, 67, 5780-5790.
227. Wüthrich, B., & Défago, G. (1991). Suppression of wheat take-all and black root rot of tobacco by Pseudomonas fluorescens strain CHA0: results of field and pot experiments. Bulletin-0ILB/SROP, 14, 57-62.
228. Wüthrich, B. (1991). Biologische Bekämpfung der Schwarzbeinigkeit des Weizens durch Einsatz von Pseudomonas fluorescens Stamm CHA0 im Feld und Mechanismen der Krankheitsunterdrückung. Zurich ETHZ: Ph.D. Thesis.