The response of Cupriavidus metallidurans CH34 to spaceflight in the international space station

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 96, Issue 2 SPEC. ISS., 2009, Pages 227-245

  Leys, Natalie ^a   Baatout, Sarah ^a   Rosier, Caroline ^b   Dams, Annik ^a   s'Heeren, Catherine ^b   Wattiez, Ruddy ^b   Mergeay, Max ^a  

^a BELGIAN NUCLEAR RESEARCH CENTRE   (Belgium)

^b UNIVERSITY OF MONS   (Belgium)

Author keywords

Cupriavidus metallidurans CH34; Flow cytometry; Proteome analysis; Spaceflight experiments

Indexed keywords

ACETOACETATE COA TRANSFERASE SUBUNIT B; ACETONE CARBOXYLASE GAMMA SUBUNIT; ACYL COENZYME A DEHYDROGENASE; ALDEHYDE DEHYDROGENASE; BACTERIAL PROTEIN; DNA BINDING AND PROTECTION PROTEIN; FRUCTOSE BISPHOSPHATE ALDOLASE; NITROGEN RESPONSE TRANSCRIPTIONAL REGULATOR; OXIDOREDUCTASE; PROTEIN GRPE; PROTEIN HOXI; PROTEIN TRANSLATION ELONGATION FACTOR TS; PROTEIN TRANSLATION ELONGATION FACTOR TU; REACTIVE OXYGEN METABOLITE; RIBOSOMAL 30S SUBUNIT S1; RIBOSOMAL 50S SUBUNIT L7; THIOREDOXIN; THIOREDOXIN DEPENDENT AKYL HYDROPEROXIDE REDUCTASE; UNCLASSIFIED DRUG; UNIVERSAL STRESS PROTEIN A3;

AGAR MEDIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIAL SURVIVAL; BACTERIUM CULTURE; BACTERIUM ISOLATION; CELL DIFFERENTIATION; CELL SHAPE; CELL SIZE; CELL VIABILITY; CONTROLLED STUDY; CUPRIAVIDUS; CUPRIAVIDUS METALLIDURAN; ENVIRONMENTAL CHANGE; ENVIRONMENTAL TEMPERATURE; EXPERIMENTAL DESIGN; FLOW CYTOMETRY; IONIZING RADIATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATIVE STRESS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONTENT; PROTEIN EXPRESSION; SPACE FLIGHT; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CULTURE MEDIA; CUPRIAVIDUS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; FLOW CYTOMETRY; GENE EXPRESSION REGULATION, BACTERIAL; HEAT-SHOCK RESPONSE; INTERNATIONAL AGENCIES; MOLECULAR SEQUENCE DATA; PROTEOME; SPACE FLIGHT;

BACTERIA (MICROORGANISMS); CUPRIAVIDUS METALLIDURANS;

EID: 68449101702     PISSN: 00036072     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10482-009-9360-5     Document Type: Article

References (55)

1. Amadou C, Pascal G, Mangenot S, Glew M, Bontemps C, Capela D, Carrère S, Cruveiller S, Dossat C, Lajus A, Marchetti M, Poinsot V, Rouy Z, Servin B, Saad M, Schenowitz C, Barbe V, Batut J, Médigue C, Masson-Boivin C (2008) Genome sequence of the β-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia. Genome Res 18:1472-1483
2. Baatout S, De Boever P, Mergeay M (2006) Physiological changes induced in four bacterial strains following oxidative stress. Prikl Biokhim Mikrobio 42:418-427
3. Baatout S, Leys N, Hendrickx L, Dams A, Mergeay M (2007) Physiological changes induced in bacteria following pH stress as a model for space research. Acta Astronautica 60:451-459
4. Baker P, Leff L (2004) The effect of simulated microgravity on bacteria from the Mir Space Station. Microgravity Sci Technol 15:35-41
5. Baker P, Leff L (2006) Mir space station bacteria responses to modeled reduced gravity under starvation conditions. Adv Space Res 38:1152-1158
6. Benoit MR, Brown RB, Nelson ES, Todd P, Klaus DM (2008) Buoyant plumes from solute gradients generated by Escherichia coli. Phys Biol 5. doi: 10.1088/1478-3975/5/4/046007
7. Bersch B, Favier A, Schanda P, van Aelst S, Vallaeys T, Covès J, Mergeay M, Wattiez R (2008) Molecular structure and metal-binding properties of the periplasmic CopK protein expressed in Cupriavidus metallidurans CH34 during copper challenge. J Mol Biol 380:386-403
8. Boeckmann B, Bairoch A, Apweiler R, Blatter M, Estreicher A, Gasteiger E, Martin M, Michoud K, O'Donovan C, Phan I, Pilbout S, Schneider M (2003) The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res 31:365-370
9. Boyd J, Ellsworth H, Ensign S (2004) Bacterial acetone carboxylase is a manganese-dependent metalloenzyme. J Biol Chem 279:46644-46651
10. Cabiscol E, Tamarit J, Ros J (2000) Oxidative stress in bacteria and protein damage by reactive oxygen species. Int Microbiol 3:3-8
11. Castro V, Thrasher A, Healy M, Ott C, Pierson D (2004) Microbial characterization during the early habitation of the international space station. Microb Ecol 47:119-126
12. Castro V, Bruce R, Ott M, Pierson D (2006) The influence of microbiology on spacecraft design and controls: A historical perspective of the shuttle and international space station programs. SAE International 2006-01-2156
13. Collard J-M, Provoost A, Taghavi S, Mergeay M (1993) A new type of Alcaligenes eutrophus CH34 zinc resistance generated by mutations affecting regulation of the cnr cobalt-nickel resistance system. J Bacteriol 175:779-784
14. Crabbé A, De Boever P, Van Houdt R, Moors H, Mergeay M, Cornelis P (2008) Use of the rotating wall vessel technology to study the effect of shear stress on growth behavior of Pseudomonas aeruginosa PA01. Environ Microbiol 10:2098-2110
15. De Boever P, Ilyin V, Forget-Hanus D, Van der Auwera G, Mahillon J, Mergeay M (2007) Conjugation-mediated plasmid exchange between bacteria grown under spaceflight conditions. Microgravity Sci Technol XIX:138-144
16. Diels L, Mergeay M (1990) DNA probe-mediated detection of resistant bacteria from soils highly polluted by heavy metals. Appl Environ Microbiol 56:1485-1491
17. Goossens O, Vanhavere F, Leys N, De Boever P, O'Sullivan D, Zhou D, Spurny F, Yukihara EG, Gaza R, McKeever SW (2006) Radiation dosimetry for microbial experiments in the international space station using different etched track and luminescent detectors. Radiat Prot Dosim 120:433-437
18. Goris J, de Vos P, Coenye T, Hoste B, Janssens D, Brim H, Diels L, Mergeay M, Kersters K, Vandamme P et al (2001) Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend. Int J Syst Evol Microbiol 51:1773-1782
19. Hendrickx L, Mergeay M (2007) From the deep sea to the stars: Human life support through minimal communities. Curr Opin Microbiol 10:231-237
20. Horneck G, Rettberg P, Baumstark-Khan C, Rink H, Kozubek S, Schäfer M, Schmitz C (1996) DNA repair in microgravity: Studies on bacteria and mammalian cells in the experiments REPAIR and KINETICS. J Biotechnol 47:99-112
21. Karlin S, Mrázek J (2000) Predicted highly expressed genes of diverse prokaryotic genomes. J Bacteriol 182:5238-5250
22. Klaus D, Howard H (2006) Antibiotic efficacy and microbial virulence during spaceflight. Trends Biotechnol 24:131-136
23. La Duc M, Nicholson W, Kern R, Venkateswaran K (2003) Microbial characterization of the Mars Odyssey spacecraft and its encapsulation facility. Environ Microbiol 5:977-985
24. La Duc M, Kern R, Venkateswaran K (2004) Microbial monitoring of spacecraft and associated environments. Microb Ecol 47:150-158
25. Leys N, Hendrickx L, De Boever P, Baatout S, Mergeay M (2004) Spaceflight effects on bacterial physiology. J Biol Regul Homeost Agents 18:193-199
26. Liu X, Kim K, Leighton T, Theil E (2006) Paired Bacillus anthracis Dps (Mini-ferritin) have different reactivities with peroxide. J Biol Chem 281:27827-27835
27. Mastroleo F, Van Houdt R, Leroy B, Benotmane R, Janssen A, Mergeay M, Hendrickx L, Wattiez R, Leys N (2009) Experimental design and environmental parameters affect Rhodospirillum rubrum S1H response to spaceflight. ISME J (in press)
28. Mergeay M (2000) Bacteria adapted to industrial biotopes: The metal resistant Ralstonia. In: Storz G, Hengge-Aronis R (eds) Bacterial stress responses. ASM Press, Washington D.C., pp 403-414
29. Mergeay M, Nies D, Schlegel HG, Gerits J, Charles P, van Gijsegem F (1985) Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals. J Bacteriol 162:328-334
30. Mergeay M, Monchy S, Vallaeys T, Auquier V, Benotmane A, Bertin P, Taghavi S, Dunn J, van der Lelie D, Wattiez R (2003) Ralstonia metallidurans, a bacterium specifically adapted to toxic metals: Towards a catalogue of metal-responsive genes. FEMS Microbiol Rev 27:385-410
31. Mergeay M, Monchy S, Janssen P, Van Houdt R, Leys N (2009) Megaplasmids in Cupriavidus genus and metal resistance. In: Schwartz E (ed) Megaplasmids. Springer-Verlag, Berlin, pp 209-238
32. Moissl C, Osman S, La Duc M, Dekas A, Brodie E, DeSantis T, Venkateswaran K (2007) Molecular bacterial community analysis of clean rooms where spacecraft are assembled. FEMS Microbiol Ecol 61:509-521
33. Monchy S, Benotmane M, Janssen P, Vallaeys T, Taghavi S, van der Lelie N, Mergeay M (2007) Plasmids pMOL28 and pMOL30 of Cupriavidus metallidurans are specialized in the maximal viable response to heavy metals. J Bacteriol 189:7417-7425
34. Mortz E, Krogh T, Vorum H, Görg A (2001) Improved silver staining protocols for high sensitivity protein identification using matrix-assisted laser desorption/ionization-time of flight analysis. Proteomics 1:1359-1363
35. Mouz S, Coursange E, Toussaint A (2001) Ralstonia metallidurans CH34 RpoN sigma factor and the control of nitrogen metabolism and biphenyl utilization. Microbiology 147:1947-1954
36. Novikova N (2004) Review of the knowledge of microbial contamination of the Russian manned spacecraft. Microb Ecol 47:127-132
37. Novikova N, De Boever P, Poddubko S, Deshevaya E, Polikarpov N, Rakova N, Coninx I, Mergeay M (2006) Survey of environmental biocontamination on board the International Space Station. Res Microbiol 157:5-12
38. Ott M, Bruce R, Pierson D (2004) Microbial characterization of free floating condensate aboard the Mir space station. Microb Ecol 47:133-136
39. Roman M, Weir N, Wilson M, Pyle B (2006) Microbial characterization of Internal Active Thermal Control System (IATCS) hardware surfaces after five years of operation in the international space station. SAE International 2006-01-2157
40. Saint-Ruf C, Taddei F, Matic I (2004) Stress and survival of aging Escherichia coli rpoS colonies. Genetics 168:541-546
41. Salanoubat M, Genin S, Artiguenave F, Gouzy J, Mangenot S, Arlat M, Billault A, Brottier P, Camus JC, Cattolico L, Chandler M, Choisne N, Claudel-Renard C, Cunnac S, Demange N, Gaspin C, Lavie M, Moisan A, Robert C, Saurin W, Schiex T, Siguier P, Thébault P, Whalen M, Wincker P, Levy M, Weissenbach J, Boucher CA (2002) Genome sequence of the plant pathogen Ralstonia solanacearum. Nature 415:497-502
42. Sánchez MA, González B (2007) Genetic characterization of 2, 4, 6-trichlorophenol degradation in Cupriavidus necator JMP134. Appl Environ Microbiol 73:2769-2776
43. Satoshi N, Toshiaki F, Jun M (2008) Targeted engineering of Cupriavidus necator chromosome for biosynthesis of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) from vegetable oil. Can J Chem 86:621-627
44. Siegele D (2005) Universal stress proteins in Escherichia coli. J Bacteriol 187:6253-6254
45. Sluis M, Larsen R, Krum J, Anderson R, Metcalf W, Ensign S (2002) Biochemical, molecular, and genetic analyses of the acetone carboxylases from Xanthobacter autotrophicus strain Py2 and Rhodobacter capsulatus strain B10. J Bacteriol 184:2969-2977
46. Tibazarwa C, Wuertz S, Mergeay M, Wyns L, van der Lelie D (2000) Regulation of the cnr cobalt and nickel resistance determinant of Ralstonia eutropha (Alcaligenes eutrophus) CH34. J Bacteriol 182:1399-1409
47. Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, Médigue C (2006) MaGe: A microbial genome annotation system supported by synteny results. Nucleic Acids Res 34:53-65
48. Van Houdt R, De Boever P, Coninx I, Le Calvez C, Dicasillati R, Mahillon J, Mergeay M, Leys N (2009) Evaluation of the airborne bacterial population in the periodically confined Antarctic base Concordia. Microb Ecol 57:640-648
49. Vanhavere F, Genicot JL, O'Sullivan D, Zhou D, Spurny F, Jadrnickova I, Sawakuchi GO, Yukihara EG (2008) DOsimetry of BIological EXperiments in SPace (DOBIES) with luminescence (OSL and TL) and track etch detectors. Rad Meas 43:694-697
50. von Rozycki T, Nies DH (2008) Cupriavidus metallidurans: Evolution of a metal-resistant bacterium. Antonie van Leeuwenhoek. doi: 10.1007/ s10482-008-9284-5
51. Vukanti R, Mintz E, Leff L (2008) Changes in gene expression of E. coli under conditions of modeled reduced gravity. Microgravity Sci Technol 20:41-57
52. Wilson J, Ott M, Ramamurthy R, Porwollik S, McClelland M, Pierson D, Nickerson C (2002) Low-shear modeled microgravity alters the Salmonella enterica Serovar Typhimurium stress response in an RpoS-independent manner. Appl Environ Microbiol 68:5408-5416
53. Wilson J, Ott M, Höner zu Bentrup K, Ramamurthy R et al (2007) Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq. Proc Nat Acad Sci USA 104:16299-16304
54. Wilson JW, Ott CM, Quick L, Davis R, zu Bentrup KH, Crabbé A et al (2008) Media ion composition controls regulatory and virulence response of Salmonella in spaceflight. PLoS ONE 3(12):e3923
55. Zhang Y, Griffiths MW (2003) Induced expression of the heat shock protein genes uspA and grpE during starvation at low temperatures and their influence on thermal resistance of Escherichia coli O157:H7. J Food Prot 66:2045-2050