Experimental design and environmental parameters affect Rhodospirillum rubrum S1H response to space flight

ISME Journal

Volumn 3, Issue 12, 2009, Pages 1402-1419

  Mastroleo, Felice ^a,b   Van Houdt, Rob ^a   Leroy, Baptiste ^b   Benotmane, M Abderrafi ^a   Janssen, Ann ^a   Mergeay, Max ^a   Vanhavere, Filip ^a   Hendrickx, Larissa ^a   Wattiez, Ruddy ^b   Leys, Natalie ^a  

^a BELGIAN NUCLEAR RESEARCH CENTRE   (Belgium)

^b UNIVERSITY OF MONS   (Belgium)

Author keywords

Ionizing radiation; MELiSSA; Random positioning machine; Rhodospirillum rubrum; Space flight

Indexed keywords

BACTERIAL PROTEIN; PROTEOME;

ARTICLE; CHEMISTRY; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; IONIZING RADIATION; PHYSIOLOGICAL STRESS; PHYSIOLOGY; RADIATION EXPOSURE; RHODOSPIRILLUM RUBRUM; SPACE FLIGHT; WEIGHTLESSNESS;

BACTERIAL PROTEINS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEOME; RADIATION, IONIZING; RHODOSPIRILLUM RUBRUM; SPACE FLIGHT; STRESS, PHYSIOLOGICAL; WEIGHTLESSNESS;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); EMBRYOPHYTA; MELISSA; MELISSA OFFICINALIS; PROTEOBACTERIA; RHODOSPIRILLUM RUBRUM;

EID: 72649083666     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2009.74     Document Type: Article

References (61)

1. Armstrong TW, Colborn BL. (2001). Predictions of secondary neutrons and their importance to radiation effects inside the International Space Station. Radiat Meas 33: 229-234.
2. Baker PW, Leff L. (2004). The effect of simulated microgravity on bacteria from the Mir space station. Microgravity Sci Technol 15: 35-41.
3. Baker PW, Leff L. (2006). Mir space station bacteria responses to modeled reduced gravity under starvation conditions. Adv Space Res 38: 1152-1158.
4. Ballal A, Basu B, Apte SK. (2007). The Kdp-ATPase system and its regulation. J Biosci 32: 559-568.
5. Basak J. (1996). Characterization of the adaptive response to ionizing radiation induced by low doses of X-rays to Vibrio cholerae cells. Mutat Res 372: 115-118.
6. Benaroudj N, Lee DH, Goldberg AL. (2001). Trehalose accumulation during cellular stress protects cells and cellular proteins from damage by oxygen radicals. J Biol Chem 276: 24261-24267.
7. Benoit MR, Klaus DM. (2007). Microgravity, bacteria and the influence of motility. Adv Space Res 39: 1225-1232.
8. Benton ER, Benton EV. (2001). Space radiation dosimetry in low-Earth orbit and beyond. Nucl Instrum Methods Phys Res B 184: 255-294.
9. Boonyaratanakornkit JB, Cogoli A, Li CF, Schopper T, Pippia P, Galleri G et al. (2005). Key gravity-sensitive signaling pathways drive Tcell activation. FASEB J 19: 2020-2022.
10. Booth IR, Edwards MD, Black S, Schumann U, Miller S. (2007). Mechanosensitive channels in bacteria: Signs of closure? Nat Rev Microbiol 5: 431-440.
11. Bradford MM. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
12. Cánovas D, Fletcher SA, Hayashi M, Csonka LN. (2001). Role of trehalose in growth at high temperature of Salmonella enterica serovar Typhimurium. J Bacteriol 183: 3365-3371.
13. Cox B, Kislinger T, Wigle DA, Kannan A, Brown K, Okubo T et al. (2007). Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes. Mol Syst Biol 3: 109.
14. Cytryn EJ, Sangurdekar DP, Streeter JG, Franck WL, Chang WS, Stacey G et al. (2007). Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress. J Bacteriol 89: 6751-6762.
15. de Vet SJ, Rutgers R. (2007). From waste to energy: first experimental bacterial fuel cells onboard the international space station. Microgravity Sci Technol XIX-5/6: 225-229.
16. Elias JE, HaasW, Faherty BK, Gygi SP. (2005). Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nat Methods 2: 667-675.
17. Ewing D. (1995). Can an X-ray dose threshold be measured for the induction of SOS repair activity in E. coli. Biochem Biophys Res Commun 206: 781-785.
18. Farges B, Poughon L, Creuly C, Cornet JF, Dussap CG, Lasseur C. (2008). Dynamic aspects and controllability of the MELiSSA project: A bioregenerative system to provide life support in space. Appl Biochem Biotechnol 151: 686-699.
19. Foster PL. (2007). Stress-induced mutagenesis in bacteria. Crit Rev Biochem Mol Biol 42: 373-397.
20. Giotis ES, Muthaiyan A, Blair IS, Wilkinson BJ, McDowell DA. (2008). Genomic and proteomic analysis of the Alkali-Tolerance Response (AlTR) in Listeria monocytogenes 10403S. BMC Microbiol 24: 102.
21. Goossens O, Vanhavere F, Leys N, De Boever P, O'Sullivan D, Zhou D et al. (2006). Radiation dosimetry for microbial experiments in the International Space Station using different etched track and luminescent detectors. Radiat Prot Dosimetry 120: 433-437.
22. Gunasekera TS, Csonka LN, Paliy O. (2008). Genome-wide transcriptional responses of Escherichia coli K-12 to continuous osmotic and heat stresses. J Bacteriol 190: 3712-3720.
23. Hantke K. (2001). Iron and metal regulation in bacteria. Curr Opin Microbiol 4: 172-177.
24. Hendrickx L, De Wever H, Hermans V, Mastroleo F, Morin N, Wilmotte A et al. (2006). Microbial ecology of the closed artificial ecosystem MELiSSA (Micro-Ecological Life Support System Alternative): reinventing and compartmentalizing the Earth's food and oxygen regeneration system for long-haul space exploration missions. Res Microbiol 157: 77-86.
25. Hendrickx L, Mergeay M. (2007). From the deep sea to the stars: human life support through minimal communities. Curr Opin Microbiol 10: 231-237.
26. Hengge-Aronis R, Lange R, Henneberg N, Fischer D. (1993). Osmotic regulation of rpoS-dependent genes in Escherichia coli. J Bacteriol 175: 259-265.
27. Hoson T, Kamisaka S, Masuda Y, Yamashita M, Buchen B. (1997). Evaluation of the three-dimensional clinostat as a simulator of weightlessness. Planta 203(Suppl): S187-S197.
28. Huang H, Claycamp HG. (1993). DNA excision repair as a component of adaptation to low doses of ionizing radiation in Escherichia coli. Int J Radiat Biol 64: 613-619.
29. Hurst AC, Petrov E, Kloda A, Nguyen T, Hool L, Martinac B. (2008). MscS, the bacterial mechanosensitive channel of small conductance. Int J Biochem Cell Biol 40: 581-585.
30. Idaho State University (ISU) (2008). 'Radioactivity in nature', ISU connection website (August 2008) http://www.physics.isu.edu/radinf/natural. htm#top.
31. Imlay JA. (2003). Pathways of oxidative damage. Annu Rev Microbiol 57: 395-418.
32. Julka S, Regnier F. (2004). Quantification in proteomics through stable isotope coding: A review. J Proteome Res 3: 350-363.
33. Klaus DM, Howard HN. (2006). Antibiotic efficacy and microbial virulence during space flight. Trends Biotechnol 24: 131-136.
34. Klaus D, Simske S, Todd P, Stodieck L. (1997). Investigation of space flight effects on Escherichia coli and a proposed model of underlying physical mechanisms. Microbiology 143: 449-455.
35. Lee Y, Pena-Llopis S, Kang Y-S, Shin H-D, Demple B, Madsen EL et al. (2006). Expression analysis of the fpr (ferredoxin-NADP+ reductase) gene in Pseudomonas putida KT2440.Biochem Biophys Research Comm 339: 1246-1254.
36. Lehmann Y, Meile L, Teuber M. (1996). Rubrerythrin from Clostridium perfringens: cloning of the gene, purification of the protein, and characterization of its superoxide dismutase function. J Bacteriol 178: 7152-7158.
37. Leys N, Baatout S, Rosier C, Dams A, S'Heeren C, Wattiez R et al. The response of Cupriavidus metallidurans CH34 to spaceflight in the international space station. Antonie Van Leeuwenhoek (in press).
38. Leys NM, Hendrickx L, De Boever P, Baatout S, Mergeay M. (2004). Space flight effects on bacterial physiology. J Biol Regul Homeost Agents 18: 193-199.
39. Lumppio HL, Shenvi NV, Summers AO, Voordouw G, Kurtz Jr DM. (2001). Rubrerythrin and rubredoxin oxidoreductase in Desulfovibrio vulgaris: A novel oxidative stress protection system. J Bacteriol 183: 101-108.
40. Mackenzie C, Eraso JM, Choudhary M, Roh JH, Zeng X, Bruscella P et al. (2007). Postgenomic adventures with Rhodobacter sphaeroides. Annu Rev Microbiol 61: 283-307.
41. Mergeay M, Nies D, Schlegel HG, Gerits J, Charles P, Van Gijsegem F. (1985). Alcaligenes eutrophus CH34 is a facultative chemolithotroph with plasmid-bound resistance to heavy metals. J Bacteriol 162: 328-334.
42. Mergeay M, Verstraete W, Dubertret G, Lefort-Tran M, Chipaux C, Binot RA 'MELiSSA'-A micro-organismsbased model for 'CELSS' development. Proceedings at the 3rd European Symposium on Space Thermal Control & Life Support Systems Noordwijk, The Netherlands (1988) pp 65-68.
43. Mitaroff A, Silari M. (2002). The CERN-EU high-energy reference field (CERF) facility for dosimetry at commercial flight altitudes and in space. Radiat Prot Dosimetry 102: 7-22.
44. Müller J, Walter F, van Dijl JM, Behnke D. (1992). Suppression of the growth and export defects of an Escherichia coli secA(Ts) mutant by a gene cloned from Bacillus subtilis. Mol Gen Genet 235: 89-96.
45. Nicholson WL, Munakata N, Horneck G, Melosh HJ, Setlow P. (2000). Resistance of Bacillus endospores to extreme terrestrial and extraterrestrial environments. Microbiol Mol Biol Rev 64: 548-572.
46. Nicholson WL, Schuerger AC, Setlow P. (2005). The solar UV environment and bacterial spore UV resistance: considerations for Earth-to-Mars transport by natural processes and human spaceflight. Mutat Res 571: 249-264.
47. Nickerson AC, Ott CM, Wilson JW, Ramamurthy R, Pierson DL. (2004). Microbial responses to microgravity and other low-shear environments. Microbiol Mol Biol Rev 68: 345-361.
48. Okamura Y, Takeyama H, Matsunaga T. (2001). A magnetosome-specific GTPase from the magnetic bacterium Magnetospirillum magneticum AMB-1. J Biol Chem 276: 48183-48188.
49. Palma M, DeLuca D, Worgall S, Quadri LE. (2004). Transcriptome analysis of the response of Pseudomonas aeruginosa to hydrogen peroxide. J Bacteriol 186: 248-252.
50. Rea G, Esposito D, Damasso M, Serafini A, Margonelli A, Faraloni C et al. (2008). Ionizing radiation impacts photochemical quantum yield and oxygen evolution activity of Photosystem II in photosynthetic microorganisms. Int J Radiat Biol 84: 867-877.
51. Saegesser S, Ghosh R, Bachofen R. (1992). Stability of broad host range cloning vectors in the phototrophic bacterium Rhodospirillum rubrum. FEMS Microbiol Lett 95: 7-12.
52. Schmidt A, Kellermann J, Lottspeich F. (2005). A novel strategy for quantitative proteomics using isotopecoded protein labels. Proteomics 5: 4-15.
53. Sistrom WR. (1960). A requirement for sodium in the growth medium of Rhodopseudomonas sphaeroides. J Gen Microbiol 22: 77-85.
54. Smirnova GV, Muzyka NG, Oktyabrsky ON. (2000). The role of antioxidant enzymes in response of Escherichia coli to osmotic upshift. FEMS Microbiol Lett 186: 209-213.
55. Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S et al. (2006). MaGe: A microbial genome annotation system supported by synteny results. Nucleic Acids Res 34: 53-65.
56. Vanhavere F, Coeck M, Vermeersch F. (2001). Procedures for neutron scattering corrections in a calibration facility with a non-symmetric set-up. Radiat Prot Dosimetry 93: 5-10.
57. Vanhavere F, Genicot JL, O'Sullivan D, Zhou D, Spurny F, Jadrnickova I et al. (2008). DOsimetry of BIological EXperiments in SPace (DOBIES) with luminescence(OSL and TL) and track etch detectors. Radiat Meas 43: 694-697.
58. Vecerek B, Moll I, Afonyushkin T, Kaberdin V, Blasi U. (2003). Interaction of the RNA chaperone Hfq with mRNAs: Direct and indirect roles of Hfq in iron metabolism of Escherichia coli. Mol Microbiol 50: 897-909.
59. Walther I, Pippia P, Meloni MA, Turrini F, Mannu F, Cogoli A. (1998). Simulated microgravity inhibits the genetic expression of interleukin-2 and its receptor in mitogen-activated T lymphocytes. FEBS Lett 436: 115-118.
60. Wilson JW, Ott CM, Quick L, Davis R, zu Bentrup KH, CrabbéA et al. (2008). Media ion composition controls regulatory and virulence response of Salmonella in spaceflight. PLoS ONE 3: e3923.
61. Wood JM. (1999). Osmosensing by bacteria: Signals and membrane-based sensors. Microbiol Mol Biol Rev 63: 230-262.