-
1
-
-
0034071761
-
Stretching of single collapsed DNA molecules
-
Baumann C G, Bloomfield V A, Smith S B, Bustamante C, Wang M D and Block S M 2000 Stretching of single collapsed DNA molecules Biophys. J. 78 1965-78
-
(2000)
Biophys. J.
, vol.78
, Issue.4
, pp. 1965-1978
-
-
Baumann, C.G.1
Bloomfield, V.A.2
Smith, S.B.3
Bustamante, C.4
Wang, M.D.5
Block, S.M.6
-
2
-
-
0036198476
-
Unzipping DNA with optical tweezers: High sequence sensitivity and force flips
-
Bockelmann U, Thomen P, Essevaz-Roulet B, Viasnoff V and Heslot F 2002 Unzipping DNA with optical tweezers: high sequence sensitivity and force flips Biophys. J. 82 1537-53
-
(2002)
Biophys. J.
, vol.82
, Issue.3
, pp. 1537-1553
-
-
Bockelmann, U.1
Thomen, P.2
Essevaz-Roulet, B.3
Viasnoff, V.4
Heslot, F.5
-
3
-
-
85015087906
-
Ten years of tension: Single-molecule DNA mechanics
-
Bustamante C, Bryant Z and Smith S B 2003 Ten years of tension: single-molecule DNA mechanics Nature 421 423-7
-
(2003)
Nature
, vol.421
, Issue.6921
, pp. 423-427
-
-
Bustamante, C.1
Bryant, Z.2
Smith, S.B.3
-
7
-
-
0030024985
-
Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
-
Smith S B, Cui Y and Bustamante C 1996 Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules Science 271 795-9
-
(1996)
Science
, vol.271
, Issue.5250
, pp. 795-799
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
8
-
-
0026495432
-
Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads
-
Smith S B, Finzi L and Bustamante C 1992 Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads Science 258 1122-6
-
(1992)
Science
, vol.258
, Issue.5085
, pp. 1122-1126
-
-
Smith, S.B.1
Finzi, L.2
Bustamante, C.3
-
9
-
-
0036600949
-
Force spectroscopy of single DNA and RNA molecules
-
Williams M C and Rouzina I 2002 Force spectroscopy of single DNA and RNA molecules Curr. Opin. Struct. Biol. 12 330-6
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, Issue.3
, pp. 330-336
-
-
Williams, M.C.1
Rouzina, I.2
-
10
-
-
0034530126
-
Single molecule force spectroscopy in biology using the atomic force microscope
-
Zlatanova J, Lindsay S M and Leuba S H 2000 Single molecule force spectroscopy in biology using the atomic force microscope Prog. Biophys. Mol. Biol. 74 37-61
-
(2000)
Prog. Biophys. Mol. Biol.
, vol.74
, Issue.1-2
, pp. 37-61
-
-
Zlatanova, J.1
Lindsay, S.M.2
Leuba, S.H.3
-
12
-
-
33748754047
-
Essential residues in the C terminus of the bacteriophage T7 gene 2.5 single-stranded DNA-binding protein
-
DOI 10.1074/jbc.M604601200
-
Marintcheva B, Hamdan S M, Lee S J and Richardson C C 2006 Essential residues in the C terminus of the bacteriophage T7 gene 2.5 single-stranded DNA-binding protein J. Biol. Chem. 281 25831-40 (Pubitemid 44401971)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.35
, pp. 25831-25840
-
-
Marintcheva, B.1
Hamdan, S.M.2
Lee, S.-J.3
Richardson, C.C.4
-
13
-
-
41149174663
-
Acidic C-terminal tail of the ssDNA-binding protein of bacteriophage T7 and ssDNA compete for the same binding surface
-
Marintcheva B, Marintchev A, Wagner G and Richardson C C 2008 Acidic C-terminal tail of the ssDNA-binding protein of bacteriophage T7 and ssDNA compete for the same binding surface Proc. Natl Acad. Sci. USA 105 1855-60
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, Issue.6
, pp. 1855-1860
-
-
Marintcheva, B.1
Marintchev, A.2
Wagner, G.3
Richardson, C.C.4
-
14
-
-
1042298812
-
Mechanical measurement of single-molecule binding rates: Kinetics of DNA helix-destabilization by T4 gene 32 protein
-
Pant K, Karpel R L, Rouzina I and Williams M C 2004 Mechanical measurement of single-molecule binding rates: kinetics of DNA helix-destabilization by T4 gene 32 protein J. Mol. Biol. 336 851-70
-
(2004)
J. Mol. Biol.
, vol.336
, Issue.4
, pp. 851-870
-
-
Pant, K.1
Karpel, R.L.2
Rouzina, I.3
Williams, M.C.4
-
15
-
-
18844364649
-
Salt dependent binding of T4 gene 32 protein to single and double-stranded DNA: Single molecule force spectroscopy measurements
-
Pant K, Karpel R L, Rouzina I and Williams M C 2005 Salt dependent binding of T4 gene 32 protein to single and double-stranded DNA: single molecule force spectroscopy measurements J. Mol. Biol. 349 317-30
-
(2005)
J. Mol. Biol.
, vol.349
, Issue.2
, pp. 317-330
-
-
Pant, K.1
Karpel, R.L.2
Rouzina, I.3
Williams, M.C.4
-
16
-
-
0344406718
-
Kinetic regulation of single DNA molecule denaturation by T4 gene 32 protein structural domains
-
Pant K, Karpel R L and Williams M C 2003 Kinetic regulation of single DNA molecule denaturation by T4 gene 32 protein structural domains J. Mol. Biol. 327 571-8
-
(2003)
J. Mol. Biol.
, vol.327
, Issue.3
, pp. 571-578
-
-
Pant, K.1
Karpel, R.L.2
Williams, M.C.3
-
17
-
-
33845975656
-
Single molecule force spectroscopy of salt-dependent bacteriophage T7 gene 2.5 protein binding to single-stranded DNA
-
Shokri L, Marintcheva B, Richardson C C, Rouzina I and Williams M C 2006 Single molecule force spectroscopy of salt-dependent bacteriophage T7 gene 2.5 protein binding to single-stranded DNA J. Biol. Chem. 281 38689-96
-
(2006)
J. Biol. Chem.
, vol.281
, Issue.50
, pp. 38689-38696
-
-
Shokri, L.1
Marintcheva, B.2
Richardson, C.C.3
Rouzina, I.4
Williams, M.C.5
-
18
-
-
55249119565
-
Kinetics and thermodynamics of salt-dependent T7 gene 2.5 protein binding to single- and double-stranded DNA
-
Shokri L, Marintcheva B, Eldib M, Hanke A, Rouzina I and Williams M C 2008 Kinetics and thermodynamics of salt-dependent T7 gene 2.5 protein binding to single- and double-stranded DNA Nucleic Acids Res. 36 5668-77
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.17
, pp. 5668-5677
-
-
Shokri, L.1
Marintcheva, B.2
Eldib, M.3
Hanke, A.4
Rouzina, I.5
Williams, M.C.6
-
19
-
-
0030064676
-
DNA: An extensible molecule
-
Cluzel P, Lebrun A, Heller C, Lavery R, Viovy J-L, Chatenay D and Caron F 1996 DNA: an extensible molecule Science 271 792-4
-
(1996)
Science
, vol.271
, Issue.5250
, pp. 792-794
-
-
Cluzel, P.1
Lebrun, A.2
Heller, C.3
Lavery, R.4
Viovy, J.-L.5
Chatenay, D.6
Caron, F.7
-
20
-
-
0029899989
-
Modelling extreme stretching of DNA
-
Lebrun A and Lavery R 1996 Modelling extreme stretching of DNA Nucleic Acids Res. 24 2260-7
-
(1996)
Nucleic Acids Res.
, vol.24
, Issue.12
, pp. 2260-2267
-
-
Lebrun, A.1
Lavery, R.2
-
21
-
-
0035146646
-
Force-induced melting of the DNA double helix 1. Thermodynamic analysis
-
Rouzina I and Bloomfield V A 2001 Force-induced melting of the DNA double helix: 1. Thermodynamic analysis Biophys. J. 80 882-93 (Pubitemid 32128339)
-
(2001)
Biophysical Journal
, vol.80
, Issue.2
, pp. 882-893
-
-
Rouzina, I.1
Bloomfield, V.A.2
-
22
-
-
0035144566
-
Force-induced melting of the DNA double helix. 2. Effect of solution conditions
-
Rouzina I and Bloomfield V A 2001 Force-induced melting of the DNA double helix: 2. Effect of solution conditions Biophys. J. 80 894-900 (Pubitemid 32128340)
-
(2001)
Biophysical Journal
, vol.80
, Issue.2
, pp. 894-900
-
-
Rouzina, I.1
Bloomfield, V.A.2
-
23
-
-
0036009140
-
Thermodynamics of DNA interactions from single molecule stretching experiments
-
Williams M C, Rouzina I and Bloomfield V A 2002 Thermodynamics of DNA interactions from single molecule stretching experiments Acc. Chem. Res. 35 159-66
-
(2002)
Acc. Chem. Res.
, vol.35
, Issue.3
, pp. 159-166
-
-
Williams, M.C.1
Rouzina, I.2
Bloomfield, V.A.3
-
24
-
-
0035072057
-
Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching
-
Williams M C, Wenner J R, Rouzina I and Bloomfield V A 2001 Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching Biophys. J. 80 1932-9
-
(2001)
Biophys. J.
, vol.80
, Issue.4
, pp. 1932-1939
-
-
Williams, M.C.1
Wenner, J.R.2
Rouzina, I.3
Bloomfield, V.A.4
-
25
-
-
0035144565
-
Effect of pH on the overstretching transition of double-stranded DNA: Evidence of force-induced DNA melting
-
Williams M C, Wenner J R, Rouzina I and Bloomfield V A 2001 Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting Biophys. J. 80 874-81
-
(2001)
Biophys. J.
, vol.80
, Issue.2
, pp. 874-881
-
-
Williams, M.C.1
Wenner, J.R.2
Rouzina, I.3
Bloomfield, V.A.4
-
26
-
-
33847154255
-
Mechanisms of DNA binding determined in optical tweezers experiments
-
McCauley M J and Williams M C 2007 Mechanisms of DNA binding determined in optical tweezers experiments Biopolymers 85 154-68
-
(2007)
Biopolymers
, vol.85
, Issue.2
, pp. 154-168
-
-
McCauley, M.J.1
Williams, M.C.2
-
27
-
-
34249797273
-
Quantifying force-dependent and zero-force DNA intercalation by single-molecule stretching
-
Vladescu I D, McCauley M J, Nunez M E, Rouzina I and Williams M C 2007 Quantifying force-dependent and zero-force DNA intercalation by single-molecule stretching Nat. Methods 4 517-22
-
(2007)
Nat. Methods
, vol.4
, Issue.6
, pp. 517-522
-
-
Vladescu, I.D.1
McCauley, M.J.2
Nunez, M.E.3
Rouzina, I.4
Williams, M.C.5
-
28
-
-
28844463534
-
Mapping the phase diagram of single DNA molecule force-induced melting in the presence of ethidium
-
Vladescu I D, McCauley M J, Rouzina I and Williams M C 2005 Mapping the phase diagram of single DNA molecule force-induced melting in the presence of ethidium Phys. Rev. Lett. 95 158102
-
(2005)
Phys. Rev. Lett.
, vol.95
, Issue.15
, pp. 158102
-
-
Vladescu, I.D.1
McCauley, M.J.2
Rouzina, I.3
Williams, M.C.4
-
29
-
-
53449084401
-
Distinct double- and single-stranded DNA binding of E. coli replicative DNA polymerase III alpha subunit
-
McCauley M J, Shokri L, Sefcikova J, Venclovas C, Beuning P J and Williams M C 2008 Distinct double- and single-stranded DNA binding of E. coli replicative DNA polymerase III alpha subunit ACS Chem. Biol. 3 577-87
-
(2008)
ACS Chem. Biol.
, vol.3
, Issue.9
, pp. 577-587
-
-
McCauley, M.J.1
Shokri, L.2
Sefcikova, J.3
Venclovas, C.4
Beuning, P.J.5
Williams, M.C.6
-
31
-
-
41149135357
-
Mechanically manipulating the DNA threading intercalation rate
-
Paramanathan T, Westerlund F, McCauley M J, Rouzina I, Lincoln P and Williams M C 2008 Mechanically manipulating the DNA threading intercalation rate J. Am. Chem. Soc. 130 3752-3
-
(2008)
J. Am. Chem. Soc.
, vol.130
, Issue.12
, pp. 3752-3753
-
-
Paramanathan, T.1
Westerlund, F.2
McCauley, M.J.3
Rouzina, I.4
Lincoln, P.5
Williams, M.C.6
-
32
-
-
33750016312
-
Rapid kinetics of protein-nucleic acid interaction is a major component of HIV-1 nucleocapsid protein's nucleic acid chaperone function
-
Cruceanu M, Gorelick R J, Musier-Forsyth K, Rouzina I and Williams M C 2006 Rapid kinetics of protein-nucleic acid interaction is a major component of HIV-1 nucleocapsid protein's nucleic acid chaperone function J. Mol. Biol. 363 867-77
-
(2006)
J. Mol. Biol.
, vol.363
, Issue.5
, pp. 867-877
-
-
Cruceanu, M.1
Gorelick, R.J.2
Musier-Forsyth, K.3
Rouzina, I.4
Williams, M.C.5
-
33
-
-
32644440043
-
Nucleic acid binding and chaperone properties of HIV-1 Gag and nucleocapsid proteins
-
Cruceanu M et al 2006 Nucleic acid binding and chaperone properties of HIV-1 Gag and nucleocapsid proteins Nucleic Acids Res. 34 593-605
-
(2006)
Nucleic Acids Res.
, vol.34
, Issue.2
, pp. 593-605
-
-
Cruceanu, M.1
Al, E.2
-
34
-
-
24144463904
-
Theory of electrostatically regulated binding of T4 gene 32 protein to single- and double-stranded DNA
-
DOI 10.1529/biophysj.105.063776
-
Rouzina I, Pant K, Karpel R L and Williams M C 2005 Theory of electrostatically regulated binding of T4 gene 32 protein to single- and double-stranded DNA Biophys. J. 89 1941-56 (Pubitemid 41233549)
-
(2005)
Biophysical Journal
, vol.89
, Issue.3
, pp. 1941-1956
-
-
Rouzina, I.1
Pant, K.2
Karpel, R.L.3
Williams, M.C.4
-
35
-
-
53749089459
-
Retroviral nucleocapsid proteins display non-equivalent levels of nucleic acid chaperone activity
-
Stewart-Maynard K M, Cruceanu M, Wang F, Vo M N, Gorelick R J, Williams M C, Rouzina I and Musier-Forsyth K 2008 Retroviral nucleocapsid proteins display non-equivalent levels of nucleic acid chaperone activity J. Virol. 82 10129-42
-
(2008)
J. Virol.
, vol.82
, Issue.20
, pp. 10129-10142
-
-
Stewart-Maynard, K.M.1
Cruceanu, M.2
Wang, F.3
Vo, M.N.4
Gorelick, R.J.5
Williams, M.C.6
Rouzina, I.7
Musier-Forsyth, K.8
-
36
-
-
0035932997
-
Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching
-
Williams M C, Rouzina I, Wenner J R, Gorelick R J, Musier-Forsyth K and Bloomfield V A 2001 Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching Proc. Natl Acad. Sci. USA 98 6121-6
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, Issue.11
, pp. 6121-6126
-
-
Williams, M.C.1
Rouzina, I.2
Wenner, J.R.3
Gorelick, R.J.4
Musier-Forsyth, K.5
Bloomfield, V.A.6
-
37
-
-
51049121185
-
DNA overstretching in the presence of glyoxal: Structural evidence of force-induced DNA melting
-
Shokri L, McCauley M J, Rouzina I and Williams M C 2008 DNA overstretching in the presence of glyoxal: structural evidence of force-induced DNA melting Biophys. J. 95 1248-55
-
(2008)
Biophys. J.
, vol.95
, Issue.3
, pp. 1248-1255
-
-
Shokri, L.1
McCauley, M.J.2
Rouzina, I.3
Williams, M.C.4
-
38
-
-
0000600380
-
Bacteriophage T7 gene 2.5 protein: An essential protein for DNA replication
-
Kim Y T and Richardson C C 1993 Bacteriophage T7 gene 2.5 protein: an essential protein for DNA replication Proc. Natl Acad. Sci. USA 90 10173-7
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, Issue.21
, pp. 10173-10177
-
-
Kim, Y.T.1
Richardson, C.C.2
-
39
-
-
0035859960
-
Structure of the gene 2.5 protein, a single-stranded DNA binding protein encoded by bacteriophage T7
-
Hollis T, Stattel J M, Walther D S, Richardson C C and Ellenberger T 2001 Structure of the gene 2.5 protein, a single-stranded DNA binding protein encoded by bacteriophage T7 Proc. Natl Acad. Sci. USA 98 9557-62
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, Issue.17
, pp. 9557-9562
-
-
Hollis, T.1
Stattel, J.M.2
Walther, D.S.3
Richardson, C.C.4
Ellenberger, T.5
-
40
-
-
0026724935
-
Purification and characterization of the bacteriophage T7 gene 2.5 protein. A single-stranded DNA-binding protein
-
Kim Y T, Tabor S, Bortner C, Griffith J D and Richardson C C 1992 Purification and characterization of the bacteriophage T7 gene 2.5 protein. A single-stranded DNA-binding protein J. Biol. Chem. 267 15022-31
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 15022-15031
-
-
Kim, Y.T.1
Tabor, S.2
Bortner, C.3
Griffith, J.D.4
Richardson, C.C.5
-
41
-
-
0028018381
-
Acidic carboxyl-terminal domain of gene 2.5 protein of bacteriophage T7 is essential for protein-protein interactions
-
Kim Y T and Richardson C C 1994 Acidic carboxyl-terminal domain of gene 2.5 protein of bacteriophage T7 is essential for protein-protein interactions J. Biol. Chem. 269 5270-8
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 5270-5278
-
-
Kim, Y.T.1
Richardson, C.C.2
-
42
-
-
0026741792
-
Interactions of gene 2.5 protein and DNA polymerase of bacteriophage T7
-
Kim Y T, Tabor S, Churchich J E and Richardson C C 1992 Interactions of gene 2.5 protein and DNA polymerase of bacteriophage T7 J. Biol. Chem. 267 15032-40
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 15032-15040
-
-
Kim, Y.T.1
Tabor, S.2
Churchich, J.E.3
Richardson, C.C.4
-
43
-
-
0030739376
-
The acidic carboxyl terminus of the bacteriophage T7 gene 4 helicase/primase interacts with T7 DNA polymerase
-
Notarnicola S M, Mulcahy H L, Lee J and Richardson C C 1997 The acidic carboxyl terminus of the bacteriophage T7 gene 4 helicase/primase interacts with T7 DNA polymerase J. Biol. Chem. 272 18425-33
-
(1997)
J. Biol. Chem.
, vol.272
, Issue.29
, pp. 18425-18433
-
-
Notarnicola, S.M.1
Mulcahy, H.L.2
Lee, J.3
Richardson, C.C.4
-
44
-
-
0041706121
-
A single-stranded DNA-binding protein of bacteriophage T7 defective in DNA annealing
-
Rezende L F, Willcox S, Griffith J D and Richardson C C 2003 A single-stranded DNA-binding protein of bacteriophage T7 defective in DNA annealing J. Biol. Chem. 278 29098-105
-
(2003)
J. Biol. Chem.
, vol.278
, Issue.31
, pp. 29098-29105
-
-
Rezende, L.F.1
Willcox, S.2
Griffith, J.D.3
Richardson, C.C.4
-
45
-
-
0029933249
-
Single-stranded DNA binding protein and DNA helicase of bacteriophage T7 mediate homologous DNA strand exchange
-
Kong D and Richardson C C 1996 Single-stranded DNA binding protein and DNA helicase of bacteriophage T7 mediate homologous DNA strand exchange EMBO J. 15 2010-9
-
(1996)
EMBO J.
, vol.15
, pp. 2010-2019
-
-
Kong, D.1
Richardson, C.C.2
-
46
-
-
0014963741
-
T4 bacteriophage gene 32: A structural protein in the replication and recombination of DNA
-
Alberts B M and Frey L 1970 T4 bacteriophage gene 32: a structural protein in the replication and recombination of DNA Nature 227 1313-8
-
(1970)
Nature
, vol.227
, Issue.5265
, pp. 1313-1318
-
-
Alberts, B.M.1
Frey, L.2
-
47
-
-
0017732634
-
Catalysis of DNA reassociation by the Escherichia coli DNA binding protein: A polyamine-dependent reaction
-
Christiansen C and Baldwin R L 1977 Catalysis of DNA reassociation by the Escherichia coli DNA binding protein: a polyamine-dependent reaction J. Mol. Biol. 115 441-54
-
(1977)
J. Mol. Biol.
, vol.115
, Issue.3
, pp. 441-454
-
-
Christiansen, C.1
Baldwin, R.L.2
-
48
-
-
33748757330
-
The C-terminal residues of bacteriophage T7 gene 4 helicase-primase coordinate helicase and DNA polymerase activities
-
Lee S J, Marintcheva B, Hamdan S M and Richardson C C 2006 The C-terminal residues of bacteriophage T7 gene 4 helicase-primase coordinate helicase and DNA polymerase activities J. Biol. Chem. 281 25841-9
-
(2006)
J. Biol. Chem.
, vol.281
, Issue.35
, pp. 25841-25849
-
-
Lee, S.J.1
Marintcheva, B.2
Hamdan, S.M.3
Richardson, C.C.4
-
51
-
-
0023654385
-
Interactions of retroviral structural proteins with single-stranded nucleic acids
-
Karpel R L, Henderson L E and Oroszlan S 1987 Interactions of retroviral structural proteins with single-stranded nucleic acids J. Biol. Chem. 262 4961-7
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 4961-4967
-
-
Karpel, R.L.1
Henderson, L.E.2
Oroszlan, S.3
-
52
-
-
0029052511
-
Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA
-
Shamoo Y, Friedman A M, Parsons M R, Konigsberg W H and Steitz T A 1995 Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA Nature 376 362-6
-
(1995)
Nature
, vol.376
, Issue.6538
, pp. 362-366
-
-
Shamoo, Y.1
Friedman, A.M.2
Parsons, M.R.3
Konigsberg, W.H.4
Steitz, T.A.5
-
53
-
-
0025286323
-
Overexpression, purification, and characterization of recombinant T4 gene 32 protein22-301 (g32P-B)
-
Giedroc D P, Khan R and Barnhart K 1990 Overexpression, purification, and characterization of recombinant T4 gene 32 protein22-301 (g32P-B) J. Biol. Chem. 265 11444-55
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 11444-11455
-
-
Giedroc, D.P.1
Khan, R.2
Barnhart, K.3
-
54
-
-
0033525654
-
Details of the nucleic acid binding site of T4 gene 32 protein revealed by proteolysis and DNA Tm depression methods
-
Wu M, Flynn E K and Karpel R L 1999 Details of the nucleic acid binding site of T4 gene 32 protein revealed by proteolysis and DNA Tm depression methods J. Mol. Biol. 286 1107-21
-
(1999)
J. Mol. Biol.
, vol.286
, Issue.4
, pp. 1107-1121
-
-
Wu, M.1
Flynn, E.K.2
Karpel, R.L.3
-
55
-
-
0022555837
-
Single-stranded DNA binding proteins required for DNA replication
-
Chase J W and Williams K R 1986 Single-stranded DNA binding proteins required for DNA replication Ann. Rev. Biochem. 55 103-36
-
(1986)
Ann. Rev. Biochem.
, vol.55
, Issue.1
, pp. 103-136
-
-
Chase, J.W.1
Williams, K.R.2
-
56
-
-
0003756549
-
-
Washington, DC: ASM Press
-
Williams K R, Shamoo Y, Spicer E K, Coleman J E and Konigsberg W H 1994 Molecular Biology of Bacteriophage T4 ed J D Karam (Washington, DC: ASM Press) pp 301-4
-
(1994)
Molecular Biology of Bacteriophage T4
, pp. 301-304
-
-
Williams, K.R.1
Shamoo, Y.2
Spicer, E.K.3
Coleman, J.E.4
Konigsberg, W.H.5
-
57
-
-
0017145254
-
DNA 'melting' proteins: II. Effects of bacteriophage T4 gene 32-protein binding on the conformation and stability of nucleic acid structures
-
Jensen D E, Kelly R C and von Hippel P H 1976 DNA 'melting' proteins: II. Effects of bacteriophage T4 gene 32-protein binding on the conformation and stability of nucleic acid structures J. Biol. Chem. 251 7215-28
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 7215-7228
-
-
Jensen, D.E.1
Kelly, R.C.2
Von Hippel, P.H.3
-
58
-
-
0035951867
-
Domain effects on the DNA-interactive properties of bacteriophage T4 gene 32 protein
-
Waidner L A, Flynn E K, Wu M, Li X and Karpel R L 2001 Domain effects on the DNA-interactive properties of bacteriophage T4 gene 32 protein J. Biol. Chem. 276 2509-16
-
(2001)
J. Biol. Chem.
, vol.276
, Issue.4
, pp. 2509-2516
-
-
Waidner, L.A.1
Flynn, E.K.2
Wu, M.3
Li, X.4
Karpel, R.L.5
-
59
-
-
0035951425
-
A general model for nucleic acid helicases and their 'coupling' within macromolecular machines
-
von Hippel P H and Delagoutte E 2001 A general model for nucleic acid helicases and their 'coupling' within macromolecular machines Cell 104 177-90
-
(2001)
Cell
, vol.104
, Issue.2
, pp. 177-190
-
-
Von Hippel, P.H.1
Delagoutte, E.2
-
60
-
-
0017125321
-
DNA 'melting' proteins: I. Effects of bovine pancreatic ribonuclease binding on the conformation and stability of DNA
-
Jensen D E and von Hippel P H 1976 DNA 'melting' proteins: I. Effects of bovine pancreatic ribonuclease binding on the conformation and stability of DNA J. Biol. Chem. 251 7198-214
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 7198-7214
-
-
Jensen, D.E.1
Von Hippel, P.H.2
-
62
-
-
0003803285
-
-
Mill Valley, CA: University Science Books
-
Bloomfield V A, Crothers D M and Tinoco I 2000 Nucleic Acids: Structures, Properties, and Functions (Mill Valley, CA: University Science Books)
-
(2000)
Nucleic Acids: Structures, Properties, and Functions
-
-
Bloomfield, V.A.1
Crothers, D.M.2
Tinoco, I.3
-
63
-
-
0016175370
-
Theoretical aspects of DNA-protein interactions: Co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice
-
McGhee J D and von Hippel P H 1974 Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice J. Mol. Biol. 86 469-89
-
(1974)
J. Mol. Biol.
, vol.86
, Issue.2
, pp. 469-489
-
-
McGhee, J.D.1
Von Hippel, P.H.2
-
64
-
-
28844432605
-
First passage time of N excluded-volume particles on a line
-
Sokolov I M, Metzler R, Pant K and Williams M C 2005 First passage time of N excluded-volume particles on a line Phys. Rev. E 72 041102
-
(2005)
Phys. Rev.
, vol.72
, Issue.4
, pp. 041102
-
-
Sokolov, I.M.1
Metzler, R.2
Pant, K.3
Williams, M.C.4
-
66
-
-
0019072839
-
On the thermodynamics and kinetics of the cooperative binding of bacteriophage T4-coded gene 32 (helix destabilizing) protein to nucleic acid lattices
-
Kowalczykowski S C, Lonberg N, Newport J W, Paul L S and von Hippel P H 1980 On the thermodynamics and kinetics of the cooperative binding of bacteriophage T4-coded gene 32 (helix destabilizing) protein to nucleic acid lattices Biophys. J. 32 403-18
-
(1980)
Biophys. J.
, vol.32
, Issue.1
, pp. 403-418
-
-
Kowalczykowski, S.C.1
Lonberg, N.2
Newport, J.W.3
Paul, L.S.4
Von Hippel, P.H.5
-
67
-
-
0019351776
-
Interactions of bacteriophage T4-coded gene 32 protein with nucleic acids. I. Characterization of the binding interactions
-
DOI 10.1016/0022-2836(81)90335-1
-
Kowalczykowski S C, Lonberg N, Newport J W and von Hippel P H 1981 Interactions of bacteriophage T4-coded gene 32 protein with nucleic acids: I. Characterization of the binding interactions J. Mol. Biol. 145 75-104 (Pubitemid 11189055)
-
(1981)
Journal of Molecular Biology
, vol.145
, Issue.1
, pp. 75-104
-
-
Kowalczykowski, S.C.1
Lonberg, N.2
Newport, J.W.3
Von Hippel, P.H.4
-
68
-
-
0019350732
-
Interactions of bacteriophage T4-coded gene 32 protein with nucleic acids: III. Binding properties of two specific proteolytic digestion products of the protein (G32P*I and G32P*III)
-
Lonberg N, Kowalczykowski S C, Paul L S and von Hippel P H 1981 Interactions of bacteriophage T4-coded gene 32 protein with nucleic acids: III. Binding properties of two specific proteolytic digestion products of the protein (G32P*I and G32P*III) J. Mol. Biol. 145 123-38
-
(1981)
J. Mol. Biol.
, vol.145
, Issue.1
, pp. 123-138
-
-
Lonberg, N.1
Kowalczykowski, S.C.2
Paul, L.S.3
Von Hippel, P.H.4
-
69
-
-
0028865843
-
3D domain swapping: A mechanism for oligomer assembly
-
Bennett M J, Schlunegger M P and Eisenberg D 1995 3D domain swapping: a mechanism for oligomer assembly Protein Sci. 4 2455-68
-
(1995)
Protein Sci.
, vol.4
, Issue.12
, pp. 2455-2468
-
-
Bennett, M.J.1
Schlunegger, M.P.2
Eisenberg, D.3
-
70
-
-
0037184944
-
Essential amino acid residues in the single-stranded DNA-binding protein of bacteriophage T7. Identification of the dimer interface
-
Rezende L F, Hollis T, Ellenberger T and Richardson C C 2002 Essential amino acid residues in the single-stranded DNA-binding protein of bacteriophage T7. Identification of the dimer interface J. Biol. Chem. 277 50643-53
-
(2002)
J. Biol. Chem.
, vol.277
, Issue.52
, pp. 50643-50653
-
-
Rezende, L.F.1
Hollis, T.2
Ellenberger, T.3
Richardson, C.C.4
-
71
-
-
0031009811
-
Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined by multiwavelength x-ray diffraction on the selenomethionyl protein at 2.9-A resolution
-
Raghunathan S, Ricard C S, Lohman T M and Waksman G 1997 Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined by multiwavelength x-ray diffraction on the selenomethionyl protein at 2.9-A resolution Proc. Natl Acad. Sci. USA 94 6652-7
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, Issue.13
, pp. 6652-6657
-
-
Raghunathan, S.1
Ricard, C.S.2
Lohman, T.M.3
Waksman, G.4
-
72
-
-
25144522675
-
Structure of Mycobacterium smegmatis single-stranded DNA-binding protein and a comparative study involving homologous SSBs: Biological implications of structural plasticity and variability in quaternary association
-
Saikrishnan K, Manjunath G P, Singh P, Jeyakanthan J, Dauter Z, Sekar K, Muniyappa K and Vijayan M 2005 Structure of Mycobacterium smegmatis single-stranded DNA-binding protein and a comparative study involving homologous SSBs: biological implications of structural plasticity and variability in quaternary association Acta Crystallogr. D 61 1140-8
-
(2005)
Acta Crystallogr.
, vol.61
, Issue.8
, pp. 1140-1148
-
-
Saikrishnan, K.1
Manjunath, G.P.2
Singh, P.3
Jeyakanthan, J.4
Dauter, Z.5
Sekar, K.6
Muniyappa, K.7
Vijayan, M.8
-
73
-
-
3042625942
-
The C-terminal domain of full-length E. coli SSB is disordered even when bound to DNA
-
Savvides S N, Raghunathan S, Futterer K, Kozlov A G, Lohman T M and Waksman G 2004 The C-terminal domain of full-length E. coli SSB is disordered even when bound to DNA Protein Sci. 13 1942-7
-
(2004)
Protein Sci.
, vol.13
, Issue.7
, pp. 1942-1947
-
-
Savvides, S.N.1
Raghunathan, S.2
Futterer, K.3
Kozlov, A.G.4
Lohman, T.M.5
Waksman, G.6
-
75
-
-
2942597631
-
Crystal structure of the Deinococcus radiodurans single-stranded DNA-binding protein suggests a mechanism for coping with DNA damage
-
Bernstein D A, Eggington J M, Killoran M P, Misic A M, Cox M M and Keck J L 2004 Crystal structure of the Deinococcus radiodurans single-stranded DNA-binding protein suggests a mechanism for coping with DNA damage Proc. Natl Acad. Sci. USA 101 8575-80
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, Issue.23
, pp. 8575-8580
-
-
Bernstein, D.A.1
Eggington, J.M.2
Killoran, M.P.3
Misic, A.M.4
Cox, M.M.5
Keck, J.L.6
-
76
-
-
0036786227
-
Kinetic mechanism of direct transfer of Escherichia coli SSB tetramers between single-stranded DNA molecules
-
Kozlov A G and Lohman T M 2002 Kinetic mechanism of direct transfer of Escherichia coli SSB tetramers between single-stranded DNA molecules Biochemistry 41 11611-27
-
(2002)
Biochemistry
, vol.41
, Issue.39
, pp. 11611-11627
-
-
Kozlov, A.G.1
Lohman, T.M.2
-
77
-
-
0037076536
-
Stopped-flow studies of the kinetics of single-stranded DNA binding and wrapping around the Escherichia coli SSB tetramer
-
Kozlov A G and Lohman T M 2002 Stopped-flow studies of the kinetics of single-stranded DNA binding and wrapping around the Escherichia coli SSB tetramer Biochemistry 41 6032-44
-
(2002)
Biochemistry
, vol.41
, Issue.19
, pp. 6032-6044
-
-
Kozlov, A.G.1
Lohman, T.M.2
-
78
-
-
33646205283
-
Microsecond dynamics of protein-DNA interactions: Direct observation of the wrapping/unwrapping kinetics of single-stranded DNA around the E. coli SSB tetramer
-
Kuznetsov S V, Kozlov A G, Lohman T M and Ansari A 2006 Microsecond dynamics of protein-DNA interactions: direct observation of the wrapping/unwrapping kinetics of single-stranded DNA around the E. coli SSB tetramer J. Mol. Biol. 359 55-65
-
(2006)
J. Mol. Biol.
, vol.359
, Issue.1
, pp. 55-65
-
-
Kuznetsov, S.V.1
Kozlov, A.G.2
Lohman, T.M.3
Ansari, A.4
-
79
-
-
0028246888
-
Escherichia coli single-stranded DNA-binding protein: Multiple DNA-binding modes and cooperativities
-
Lohman T M and Ferrari M E 1994 Escherichia coli single-stranded DNA-binding protein: multiple DNA-binding modes and cooperativities Ann. Rev. Biochem. 63 527-70
-
(1994)
Ann. Rev. Biochem.
, vol.63
, pp. 527-570
-
-
Lohman, T.M.1
Ferrari, M.E.2
|