Enhanced protein detection using a trapping mode on a hybrid quadrupole linear ion trap (Q-Trap)

Analytical Chemistry

Volumn 81, Issue 15, 2009, Pages 6300-6309

  Drogaris, Paul ^a,b   Le Blanc, J C Yves ^c   Fitzgerald, Jennifer E ^d   Lowndes, Noel F ^d   Verreault, Alain ^b   Thibault, Pierre ^a,b  

^a INSTITUTE FOR RESEARCH IN IMMUNOLOGY AND CANCER   (Canada)

^b UNIVERSITÉ DE MONTRÉAL   (Canada)

^c MDS Analytical Technologies   (Canada)

^d NATIONAL UNIVERSITY OF IRELAND   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

ALKYLATION; BIOINFORMATICS; IONS; MASS SPECTROMETERS; SIGNAL TO NOISE RATIO;

CHARGE SEPARATIONS; ENHANCED RESOLUTIONS; METHYLTRANSFERASE ACTIVITY; METHYLTRANSFERASES; MULTIPLE REACTION MONITORING; MULTIPLY CHARGED IONS; PROTEIN DETECTION; SPACE CHARGE EFFECTS;

PROTEINS;

HISTONE; HISTONE H3; ISOPROTEIN; LYSINE; METHYLTRANSFERASE;

ANALYTIC METHOD; ANIMAL CELL; ARTICLE; CHICKEN; DOWN REGULATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETER; MASS SPECTROMETRY; METHYLATION; NONHUMAN; PROTEIN ANALYSIS; SENSITIVITY AND SPECIFICITY; SIGNAL NOISE RATIO;

EID: 68049086789     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac9004259     Document Type: Article

References (37)

1. Walsh, C. T. Posttranslational Modification of Proteins: Expanding Nature's Inventory; Roberts and Company: Greenwood Village, CO, 2006.
2. Yates, J. R., III. Trends Genet 2000, 16, 5-8.
3. Wysocki, V. H.; Resing, K. A.; Zhang, Q.; Cheng, G. Methods 2005, 35, 211-222.
4. Wolters, D. A.; Washburn, M. P.; Yates, J. R., III. Anal Chem 2001, 73, 5683-5690.
5. McLafferty, F. W.; Breuker, K.; Jin, M.; Han, X.; Infusini, G.; Jiang, H.; Kong, X.; Begley, T. P. FEBS J. 2007, 274, 6256-6268.
6. Kelleher, N. L. Anal. Chem. 2004, 76, 197A-203A.
7. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
8. Erickson, B. Anal. Chem. 2006, 78, 2089.
9. Macek, B.; Waanders, L. F.; Olsen, J. V.; Mann, M. Mol. Cell Proteomics 2006, 5, 949-958.
10. Nemeth-Cawley, J. F.; Rouse, J. C. J. Mass Spectrom. 2002, 37, 270-282.
11. Nemeth-Cawley, J. F.; Tangarone, B. S.; Rouse, J. C. J. Proteome Res. 2003, 2, 495-505.
12. Schirm, M.; Schoenhofen, I. C.; Logan, S. M.; Waldron, K. C.; Thibault, P. Anal. Chem. 2005, 77, 7774-7782.
13. Stephenson, J. L.; McLuckey, S. A.; Reid, G. E.; Wells, J. M.; Bundy, J. L. Curr. Opin. Biotechnol. 2002, 13, 57-64.
14. Reid, G. E.; Wu, J.; Chrisman, P. A.; Wells, J. M.; McLuckey, S. A. Anal. Chem. 2001, 73, 3274-3281.
15. Reid, G. E.; Shang, H.; Hogan, J. M.; Lee, G. U.; McLuckey, S. A. J. Am. Chem. Soc. 2002, 124, 7353-7362.
16. Claverol, S.; Burlet-Schiltz, O.; Gairin, J. E.; Monsarrat, B. Mol. Cell Proteomics 2003, 2, 483-493.
17. Walz, J.; Siemers, I. I.; Schubert, M.; Neuhauser, W.; Blatt, R.; Teloy, E. Phys. Rev. A 1994, 50, 4122-4132.
18. Cooks, R. G.; Cleven, C. D.; Cox, K. A. Int. J. Mass Spectrom. Ion Processes 1995, 144, 47-65.
19. Dobson, G.; Murrell, J.; Despeyroux, D.; Wind, F.; Tabet, J. C. J. Mass Spectrom. 2004, 39, 1295-1304.
20. Schwartz, J. C.; Senko, M. W.; Syka, J. E. J. Am. Soc. Mass Spectrom. 2002, 13, 659-669.
21. Hager, J. W. Rapid Commun. Mass Spectrom. 2002, 16, 512-526.
22. Scherperel, G.; Yan, H.; Wang, Y.; Reid, G. E. Analyst 2006, 131, 291-302.
23. Coon, J. J.; Ueberheide, B.; Syka, J. E.; Dryhurst, D. D.; Ausio, J.; Shabanowitz, J.; Hunt, D. F. Proc. Natl. Acad. Sci. U. S. A. 2005, 102, 9463-9468.
24. Parks, B. A.; Jiang, L.; Thomas, P. M.; Wenger, C. D.; Roth, M. J.; Boyne, M. T., II; Burke, P. V.; Kwast, K. E.; Kelleher, N. L. Anal. Chem. 2007, 79, 7984-7991.
25. Londry, F. A.; Hager, J. W. J. Am. Soc. Mass Spectrom. 2003, 14, 1130-1147.
26. Le Blanc, J. C.; Hager, J. W.; Ilisiu, A. M.; Hunter, C.; Zhong, F.; Chu, I. Proteomics 2003, 3, 859-869.
27. Thompson, B. A.; Chernushevich, I. V. Rapid Commun. Mass Spectrom. 1998, 12, 1323-1329.
28. Chernushevich, I. V.; Fell, L. M.; Bloomfield, N.; Metalnikov, P. S.; Loboda, A. V. Rapid Commun. Mass Spectrom. 2003, 17, 1416-1424.
29. Dyer, P. N.; Edayathumangalam, R. S.; White, C. L.; Bao, Y.; Chakravarthy, S.; Muthurajan, U. M.; Luger, K. Methods Enzymol. 2004, 375, 23-44.
30. Shechter, D.; Dormann, H. L.; Allis, C. D.; Hake, S. B. Nat. Protoc. 2007, 2, 1445-1457.
31. Drogaris, P.; Wurtele, H.; Masumoto, H.; Verreault, A.; Thibault, P. Anal. Chem. 2008, 80, 6698-6707.
32. Luger, K.; Rechsteiner, T. J.; Flaus, A. J.; Waye, M. M.; Richmond, T. J. J. Mol. Biol. 1997, 272, 301-311.
33. Huyen, Y.; Zgheib, O.; Ditullio, R. A., Jr.; Gorgoulis, V. G.; Zacharatos, P.; Petty, T. J.; Sheston, E. A.; Mellert, H. S.; Stavridi, E. S.; Halazonetis, T. D. Nature 2004, 432, 406-411.
34. Okada, Y.; Feng, Q.; Lin, Y.; Jiang, Q.; Li, Y.; Coffield, V. M.; Su, L.; Xu, G.; Zhang, Y. Cell 2005, 121, 167-178.
35. Aihara, H.; Nakagawa, T.; Yasui, K.; Ohta, T.; Hirose, S.; Dhomae, N.; Takio, K.; Kaneko, M.; Takeshima, Y.; Muramatsu, M.; Ito, T. Genes Dev. 2004, 18, 877-888.
36. Mollah, S.; Wertz, I. E.; Phung, Q.; Arnott, D.; Dixit, V. M.; Lill, J. R. Rapid Commun. Mass Spectrom. 2007, 21, 3357-3364.
37. Unwin, R. D.; Griffiths, J. R.; Leverentz, M. K.; Grallert, A.; Hagan, I. M.; Whetton, A. D. Mol. Cell Proteomics 2005, 4, 1134-1144.